CK939493

Overview
NameCK939493
Unique NameCK939493
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length863
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK939493_ssr59 microsatellite CK939493_ssr59:59..68. BLAST: Citrus ESTs to Prunus persica proteins V1
CK939493_ssr616 microsatellite CK939493_ssr616:616..627. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CK939493 vs. ExPASy Swiss-Prot
Match: CML37_ARATH (Calcium-binding protein CML37 OS=Arabidopsis thaliana GN=CML37 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.018e-26
Identity = 74/192 (38.54%), Postives = 109/192 (56.77%), Query Frame = 3
Query:  270 QSSFERLRRKLS---------FSPKTKKADNKEGSLSLSLVLKXXXXXXXXXXXXLQKKAFNFFDENGDGRITAAELQSCLMTVGGGGELSISVADAEAAIQSSDLNGDGVLDFDEFLKLMXXXXXXXXXXXX-LRDAFALYVMDGSNSITPASLKRMLTRLGLGESKSIDDCKAMIRPFDINGDGVLSFEE 815
            +SS  RL +K+S            +++ + N  GS SL++                 +  F++ D N DG+I+  ELQSC+  +GG    ++S  + E  +++SD++GDG +DF+EFLKLM             L++AF +YVM+G   IT ASL+R L+RLG  ES ++D CK MIR FD N DGVLSF+E
Sbjct:    8 KSSLSRLYKKVSSKRSESSRNLEDESRTSSNSSGSSSLNV--------------NELRTVFDYMDANSDGKISGEELQSCVSLLGG----ALSSREVEEVVKTSDVDGDGFIDFEEFLKLMEGEDGSDEERRKELKEAFGMYVMEGEEFITAASLRRTLSRLG--ESCTVDACKVMIRGFDQNDDGVLSFDE 179          
BLAST of CK939493 vs. ExPASy Swiss-Prot
Match: CML38_ARATH (Calcium-binding protein CML38 OS=Arabidopsis thaliana GN=CML38 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.208e-24
Identity = 72/182 (39.56%), Postives = 102/182 (56.04%), Query Frame = 3
Query:  270 QSSFERLRRKLSFSPKTKKADNKEGSLSLSLVLKXXXXXXXXXXXXLQKKAFNFFDENGDGRITAAELQSCLMTVGGGGELSISVADAEAAIQSSDLNGDGVLDFDEFLKLMXXXXXXXXXXXXLRDAFALYVMDGSNSITPASLKRMLTRLGLGESKSIDDCKAMIRPFDINGDGVLSFEE 815
            QSSF++L RKLS      K ++  G +      +              +  F++ D N DGRI+  ELQ   MT+G      +S  +A AA++ SD +GDG+LDF+EF +L+            L+ AF LY+ +G + ITP SLK ML +LG  ES++ DDC+ MI  FD+N DGVLSF+E
Sbjct:    8 QSSFKKLCRKLS-----PKREDSAGEI------QQHNSSNGEDKNRELEAVFSYMDANRDGRISPEELQKSFMTLGE----QLSDEEAVAAVRLSDTDGDGMLDFEEFSQLIKVDDEEEKKME-LKGAFRLYIAEGEDCITPRSLKMMLKKLG--ESRTTDDCRVMISAFDLNADGVLSFDE 171          
BLAST of CK939493 vs. ExPASy Swiss-Prot
Match: CML39_ARATH (Calcium-binding protein CML39 OS=Arabidopsis thaliana GN=CML39 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.652e-23
Identity = 60/133 (45.11%), Postives = 84/133 (63.16%), Query Frame = 3
Query:  423 FNFFDENGDGRITAAELQSCLMTVGGGGELSISVADAEAAIQSSDLNGDGVLDFDEFLKLMXXXXXXXXXXXX--LRDAFALYVMDGSNSITPASLKRMLTRLGLGESKSIDDCKAMIRPFDINGDGVLSFEE 815
            F + D N DGRI+A EL+    T+G      +S  +AEAA++ SD++GDG+LD +EF  L+              + +AF +Y+ DG + ITP SLK ML +LG  ES++ DDCK MI+ FD+N DGVLSF+E
Sbjct:   27 FAYMDANRDGRISAEELKKSFKTLGE----QMSDEEAEAAVKLSDIDGDGMLDINEFALLIKGNDEFTEEEKKRKIMEAFRMYIADGEDCITPGSLKMMLMKLG--ESRTTDDCKVMIQAFDLNADGVLSFDE 153          
BLAST of CK939493 vs. ExPASy Swiss-Prot
Match: CML31_ORYSJ (Probable calcium-binding protein CML31 OS=Oryza sativa subsp. japonica GN=CML31 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.015e-22
Identity = 62/134 (46.27%), Postives = 82/134 (61.19%), Query Frame = 3
Query:  423 FNFFDENGDGRITAAELQSCLMTVGGGGELSISVADAEAAIQSSDLNGDGVLDFDEFLKLMXXXXXXXXXXXX---LRDAFALYVMDGSNSITPASLKRMLTRLGLGESKSIDDCKAMIRPFDINGDGVLSFEE 815
            F  FD +GDGRI+AAEL+ C+ T  G     +S  +A   + S D +GDG+L   EF++L+               LR+AF +Y M+G   ITP SL+RML RLG    + IDDC+AMI  FD+NGDGVLSF+E
Sbjct:   16 FATFDHDGDGRISAAELRLCMKTTLGE---EVSDEEAGQLVASVDADGDGLLCEAEFVRLVQAAEVEEEDERRGTGLREAFGMYEMEGEGCITPTSLRRMLRRLG--SDQDIDDCRAMICRFDLNGDGVLSFDE 144          
BLAST of CK939493 vs. ExPASy Swiss-Prot
Match: CML19_ORYSJ (Putative calcium-binding protein CML19 OS=Oryza sativa subsp. japonica GN=CML19 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.143e-22
Identity = 58/136 (42.65%), Postives = 85/136 (62.50%), Query Frame = 3
Query:  414 KKAFNFFDENGDGRITAAELQSCLMTVGGGGELSISVADAEAAIQSSDLNGDGVLDFDEFLKL--MXXXXXXXXXXXXLRDAFALYVMDGSNSITPASLKRMLTRLGLGESKSIDDCKAMIRPFDINGDGVLSFEE 815
            ++ F+ FD + DG+I+AAEL+ C+    G     +S  +AEA + S+D + DG+LD +EF KL               L +AF +Y M+G   ITPASLKRML++  LG  + I++C+ MI  FD++GDGV+SFEE
Sbjct:    9 RRVFSAFDRDADGKISAAELRLCMKAALGE---DMSAEEAEALVSSADTDDDGLLDEEEFTKLAVQLEMGDEEERCRGLMEAFRMYEMEGEGRITPASLKRMLSK--LGSHQGIEECQTMICRFDLDGDGVISFEE 139          
BLAST of CK939493 vs. ExPASy Swiss-Prot
Match: CML25_ORYSJ (Probable calcium-binding protein CML25/26 OS=Oryza sativa subsp. japonica GN=CML25 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.120e-19
Identity = 55/136 (40.44%), Postives = 84/136 (61.76%), Query Frame = 3
Query:  423 FNFFDENGDGRITAAELQSCLMTVGGGGELSISVADAEAAIQSSDLNGDGVLDFDEFLKLMXXXXXXXXXXXXLR---DAFALYVMDGSNS-ITPASLKRMLTRLGLGESK-SIDDCKAMIRPFDINGDGVLSFEE 815
            F  FD++GDG+++A+EL+ C+    G     +S  +A A + ++D +GDG+LD  EF++L             LR   +AF +Y  +   + ITPASL+RML RLG    +  +++C+AMI  FD+NGDGVLSF+E
Sbjct:    9 FAAFDKDGDGKVSASELRGCMAAALGE---EVSEEEAAAILATADTDGDGLLDHHEFMRLSAAHQLQEPAEESLRCLREAFDMYAEEEETAVITPASLRRMLRRLGSEHQRLEMEECRAMICRFDLNGDGVLSFDE 141          
BLAST of CK939493 vs. ExPASy Swiss-Prot
Match: CML23_ORYSJ (Putative calcium-binding protein CML23 OS=Oryza sativa subsp. japonica GN=CML23 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.549e-18
Identity = 54/142 (38.03%), Postives = 84/142 (59.15%), Query Frame = 3
Query:  414 KKAFNFFDENGDGRITAAELQSCLMTVGGGGELSISVADAEAAIQSSDLNGDGVLDFDEFLKLMXXXXXXXXXXXX--------LRDAFALYVMDGSNSITPASLKRMLTRLGLGESKSIDDCKAMIRPFDINGDGVLSFEE 815
            ++ F  FD++GDG+I+A EL+ C+    G     +   + +A +  +D +GDG+LD +EF++L+                    LR+AFA+Y M+G   ITP SLK ML++  LG    + +C+AMI  FD+NGDGVL+F+E
Sbjct:    8 RRVFGSFDQDGDGKISATELRLCVKASLGE---DMPDEEVQALMALADTDGDGLLDEEEFVRLVTEMEADGDEEEDDDDETCRCLREAFAMYEMEGRGCITPLSLKLMLSK--LGTHLDVAECQAMICRFDMNGDGVLTFDE 144          
BLAST of CK939493 vs. ExPASy Swiss-Prot
Match: CML7_ARATH (Calmodulin-like protein 7 OS=Arabidopsis thaliana GN=CML7 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.311e-17
Identity = 51/137 (37.23%), Postives = 78/137 (56.93%), Query Frame = 3
Query:  414 KKAFNFFDENGDGRITAAELQSCLMTVGGGGELSISVADAEAA--IQSSDLNGDGVLDFDEFLKLMXXXXXXXXXXXX-LRDAFALYVMDGSNSITPASLKRMLTRLGLGESKSIDDCKAMIRPFDINGDGVLSFEE 815
            K+ F  FD+NGDG IT  EL   L ++G      I + D E    I+  D+NGDG +D DEF +L              +++AF ++  +G   IT   LK +L+ LGL + K++DDCK MI+  D++GDG ++++E
Sbjct:    7 KRVFQMFDKNGDGTITGKELSETLRSLG------IYIPDKELTQMIEKIDVNGDGCVDIDEFGELYKTIMDEEDEEEEDMKEAFNVFDQNGDGFITVDELKAVLSSLGLKQGKTLDDCKKMIKKVDVDGDGRVNYKE 137          
BLAST of CK939493 vs. ExPASy Swiss-Prot
Match: CML2_ARATH (Calmodulin-like protein 2 OS=Arabidopsis thaliana GN=CML2 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.236e-17
Identity = 44/133 (33.08%), Postives = 73/133 (54.89%), Query Frame = 3
Query:  417 KAFNFFDENGDGRITAAELQSCLMTVGGGGELSISVADAEAAIQSSDLNGDGVLDFDEFLKLMXXXXXXXXXXXXLRDAFALYVMDGSNSITPASLKRMLTRLGLGESKSIDDCKAMIRPFDINGDGVLSFEE 815
            + F  FD+NGDG+I   EL+    +VG    + +   +    I   D+NGDG +D DEF  L             +R+AF ++  +G   IT   L+ +L  +GL + ++++DCK MI   D++GDG+++F+E
Sbjct:    8 RVFQMFDKNGDGKIAKNELKDFFKSVG----IMVPENEINEMIAKMDVNGDGAMDIDEFGSLYQEMVEEKEEEEDMREAFRVFDQNGDGFITDEELRSVLASMGLKQGRTLEDCKKMISKVDVDGDGMVNFKE 136          
BLAST of CK939493 vs. ExPASy Swiss-Prot
Match: CML3_ARATH (Calmodulin-like protein 3 OS=Arabidopsis thaliana GN=CML3 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.110e-16
Identity = 47/133 (35.34%), Postives = 72/133 (54.14%), Query Frame = 3
Query:  417 KAFNFFDENGDGRITAAELQSCLMTVGGGGELSISVADAEAAIQSSDLNGDGVLDFDEFLKLMXXXXXXXXXXXXLRDAFALYVMDGSNSITPASLKRMLTRLGLGESKSIDDCKAMIRPFDINGDGVLSFEE 815
            + F  FD NGDG+IT  EL   L  +G    + I   D    I+  DLNGDG +D +EF  L             +R+AF ++  +    IT   L+ +L  LGL + ++++DCK MI   D++GDG+++F+E
Sbjct:    8 RIFQMFDRNGDGKITKQELNDSLENLG----IYIPDKDLVQMIEKIDLNGDGYVDIEEFGGLYQTIMEERDEEEDMREAFNVFDQNRDGFITVEELRSVLASLGLKQGRTLEDCKRMISKVDVDGDGMVNFKE 136          
The following BLAST results are available for this feature:
BLAST of CK939493 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
CML37_ARATH2.018e-2638.54Calcium-binding protein CML37 OS=Arabidopsis thali... [more]
CML38_ARATH4.208e-2439.56Calcium-binding protein CML38 OS=Arabidopsis thali... [more]
CML39_ARATH4.652e-2345.11Calcium-binding protein CML39 OS=Arabidopsis thali... [more]
CML31_ORYSJ3.015e-2246.27Probable calcium-binding protein CML31 OS=Oryza sa... [more]
CML19_ORYSJ5.143e-2242.65Putative calcium-binding protein CML19 OS=Oryza sa... [more]
CML25_ORYSJ3.120e-1940.44Probable calcium-binding protein CML25/26 OS=Oryza... [more]
CML23_ORYSJ1.549e-1838.03Putative calcium-binding protein CML23 OS=Oryza sa... [more]
CML7_ARATH1.311e-1737.23Calmodulin-like protein 7 OS=Arabidopsis thaliana ... [more]
CML2_ARATH2.236e-1733.08Calmodulin-like protein 2 OS=Arabidopsis thaliana ... [more]
CML3_ARATH1.110e-1635.34Calmodulin-like protein 3 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004749_H01 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IF_H01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939493 ID=CK939493; Name=CK939493; organism=Citrus sinensis; type=EST; length=863bp
GGGGATATAAAAAAAAACAATATCATCTTATTCCCTCTTNNNATTTTTGG
AGCAGGTGTATATATATAGCCTTTCGCAGCACACACAGTTGAACAACGTA
ACCTTAATTTCGTTCTCATCCATTAGTGGTCCTAATTCCAAAGTTTTGCG
ATCAGTTGTTTCTCTTGTTGATTTCATCAAGTGCTAGAGCTGTCATCTCA
GATTCAAAAAAGCCAATCATAATCATGAAGTCTGAGGCCGCTACGGCCCA
TAGCCATGGAGGTAGAGGACAATCTTCTTTTGAAAGATTACGTAGAAAAT
TGTCATTCTCCCCAAAGACAAAGAAGGCAGACAACAAGGAGGGCTCTCTT
TCACTTTCACTTGTCTTAAAGGACGAAACTGAAAGCAGCAGCGGGAGCGA
CGGGGAGCTTCAGAAGAAGGCGTTCAACTTCTTTGACGAGAACGGAGATG
GAAGGATAACCGCAGCAGAGTTACAGAGCTGTTTAATGACGGTTGGCGGA
GGCGGGGAACTCTCCATCTCCGTGGCTGATGCCGAAGCTGCCATTCAATC
ATCCGATTTAAACGGAGATGGGGTATTGGACTTCGATGAGTTTCTGAAGC
TGATGGAGGGTAATCAGGAGGAGGAGGAGAAGAACTGCGAGCTCAGGGAT
GCTTTTGCGCTCTACGTCATGGATGGTTCCAATAGCATCACCCCGGCTAG
TCTCAAGAGGATGCTTACCCGTCTGGGTCTCGGTGAGTCCAAGTCCATTG
ATGACTGTAAAGCTATGATCAGACCCTTTGATATCAACGGTGATGGCGTC
CTCAGCTTTGAAGAGTTCTCTTTAATGATGCACTAATTCTAGCTATTATT
TCTCTCTTTTCAT
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