CX675692

Overview
NameCX675692
Unique NameCX675692
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length936
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675692 vs. ExPASy Swiss-Prot
Match: ERGI1_DANRE (Endoplasmic reticulum-Golgi intermediate compartment protein 1 OS=Danio rerio GN=ergic1 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 4.024e-23
Identity = 75/213 (35.21%), Postives = 112/213 (52.58%), Query Frame = -2
Query:  303 GKHKT--TAENVKRPAPKAGGCRIEGYVRVKKVPGNLIISARSGAHSFDTSEMNMSHVISHLSFGRKLSPKVMSDVQRLIPYLGGSHDRLNGRSFINHREVGANVTIEHYLQIVKTEVIT----RRYSREHSLLEEYEYTAHSSLVQSIYIPAAKFHFELSPMQVVITEDPKSFSHFITNVCAIIGGVFTVAGILDAILHNTMRLMKKVEIGK 923
            G+H+      ++K P     GCR EG   + KVPGN  +S  S   +      +M+H+I  L+FG KL    +  VQ     LGG+ DRL   +  +H         ++ L+IV T        +R+S ++++  + EY A+S   +   IPA  F ++LSP+ V  TE  + F  FIT +CAIIGG FTVAGI+D+ +       KK++IGK
Sbjct:   94 GRHEVGHIENSMKVPLNNGHGCRFEGEFSINKVPGNFHVSTHSA--TAQPQSPDMTHIIHKLAFGAKLQ---VQHVQGAFNALGGA-DRLQSNALASH---------DYILKIVPTVYEELGGKQRFSYQYTVANK-EYVAYSHTGR--IIPAIWFRYDLSPITVKYTERRRPFYRFITTICAIIGGTFTVAGIIDSCIFTASEAWKKIQIGK 288          
BLAST of CX675692 vs. ExPASy Swiss-Prot
Match: ERGI1_HUMAN (Endoplasmic reticulum-Golgi intermediate compartment protein 1 OS=Homo sapiens GN=ERGIC1 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.449e-22
Identity = 74/213 (34.74%), Postives = 109/213 (51.17%), Query Frame = -2
Query:  303 GKHKT--TAENVKRPAPKAGGCRIEGYVRVKKVPGNLIISARSGAHSFDTSEMNMSHVISHLSFGRKLSPKVMSDVQRLIPYLGGSHDRLNGRSFINHREVGANVTIEHYLQIVKTEVITR----RYSREHSLLEEYEYTAHSSLVQSIYIPAAKFHFELSPMQVVITEDPKSFSHFITNVCAIIGGVFTVAGILDAILHNTMRLMKKVEIGK 923
            G+H+      ++K P     GCR EG   + KVPGN  +S  S   +      +M+HVI  LSFG  L    + ++      LGG+ DRL      +H         ++ L+IV T    +    RYS ++++  + EY A+S   +   IPA  F ++LSP+ V  TE  +    FIT +CAIIGG FTVAGILD+ +       KK+++GK
Sbjct:   94 GRHEVGHIDNSMKIPLNNGAGCRFEGQFSINKVPGNFHVSTHSA--TAQPQNPDMTHVIHKLSFGDTLQ---VQNIHGAFNALGGA-DRLTSNPLASH---------DYILKIVPTVYEDKSGKQRYSYQYTVANK-EYVAYSHTGR--IIPAIWFRYDLSPITVKYTERRQPLYRFITTICAIIGGTFTVAGILDSCIFTASEAWKKIQLGK 288          
BLAST of CX675692 vs. ExPASy Swiss-Prot
Match: ERGI1_MOUSE (Endoplasmic reticulum-Golgi intermediate compartment protein 1 OS=Mus musculus GN=Ergic1 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 9.911e-22
Identity = 74/213 (34.74%), Postives = 108/213 (50.70%), Query Frame = -2
Query:  303 GKHKT--TAENVKRPAPKAGGCRIEGYVRVKKVPGNLIISARSGAHSFDTSEMNMSHVISHLSFGRKLSPKVMSDVQRLIPYLGGSHDRLNGRSFINHREVGANVTIEHYLQIVKTEVITR----RYSREHSLLEEYEYTAHSSLVQSIYIPAAKFHFELSPMQVVITEDPKSFSHFITNVCAIIGGVFTVAGILDAILHNTMRLMKKVEIGK 923
            G+H+      ++K P     GCR EG   + KVPGN  +S  S   +      +M+H I  LSFG  L    + +V      LGG+ DRL      +H         ++ L+IV T    +    RYS ++++  + EY A+S   +   IPA  F ++LSP+ V  TE  +    FIT +CAIIGG FTVAGILD+ +       KK+++GK
Sbjct:   94 GRHEVGHIDNSMKIPLNNGAGCRFEGQFSINKVPGNFHVSTHSA--TAQPQNPDMTHTIHKLSFGDTLQ---VQNVHGAFNALGGA-DRLTSNPLASH---------DYILKIVPTVYEDKSGKQRYSYQYTVANK-EYVAYSHTGR--IIPAIWFRYDLSPITVKYTERRQPLYRFITTICAIIGGTFTVAGILDSCIFTASEAWKKIQLGK 288          
BLAST of CX675692 vs. ExPASy Swiss-Prot
Match: ERGI3_XENTR (Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Xenopus tropicalis GN=ergic3 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.208e-21
Identity = 69/212 (32.55%), Postives = 110/212 (51.89%), Query Frame = -2
Query:  303 KRPAPKAGGCRIEGYVRVKKVPGNLIISA-----RSGAH-----SFDTSEMNMSHVISHLSFGRKLSPKVMSDVQRLIPYLGGSHDRLNGRSFINHREVGANVTIEHYLQIVKTEVITRRYSREHSLLEEYEYTAHSSLVQSIY----IPAAKFHFELSPMQVVITEDPKSFSHFITNVCAIIGGVFTVAGILDAIL-HNTMRLMKKVEIGK 893
            K    K  GC++ G++ V KV GN   +      +S  H     SF    +NM+H I HLSFGR        D   L+  L GS          +   + +++  +++++IV T  +  +   E     ++  T H  +   +     +P     +ELSPM V +TE  +SF+HF+T VCAIIGGVFTVAG++D+++ ++T  + KK+E+GK
Sbjct:  191 KMQEQKNEGCQVYGFLEVNKVAGNFHFAPGKSFQQSHVHVHDLQSFGLDNINMTHEIRHLSFGR--------DYPGLVNPLDGS----------SVAAMQSSMMFQYFVKIVPTVYV--KVDGEVLRTNQFSVTRHEKMTNGLIGDQGLPGVFVLYELSPMMVKLTEKHRSFTHFLTGVCAIIGGVFTVAGLIDSLVYYSTRAIQKKIELGK 382          
BLAST of CX675692 vs. ExPASy Swiss-Prot
Match: ERGI3_XENLA (Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Xenopus laevis GN=ergic3 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.869e-20
Identity = 67/217 (30.88%), Postives = 109/217 (50.23%), Query Frame = -2
Query:  303 KRPAPKAGGCRIEGYVRVKKVPGNLIISA-----RSGAH----------SFDTSEMNMSHVISHLSFGRKLSPKVMSDVQRLIPYLGGSHDRLNGRSFINHREVGANVTIEHYLQIVKTEVITRRYSREHSLLEEYEYTAHSSLVQSIY----IPAAKFHFELSPMQVVITEDPKSFSHFITNVCAIIGGVFTVAGILDAIL-HNTMRLMKKVEIGK 893
            K    K  GC++ G++ V KV GN   +      +S  H          SF    +NM+H I HLSFG+                  G  + L+G S +    + +++  +++++IV T  +  +   E     ++  T H  +   +     +P     +ELSPM V  TE  +SF+HF+T VCAIIGGVFTVAG++D+++ ++T  + KK+E+GK
Sbjct:  191 KMQEQKNEGCQVYGFLEVNKVAGNFHFAPGKSFQQSHVHVHAVEIHDLQSFGLDNINMTHEIKHLSFGKDYP---------------GLVNPLDGTSIV---AMQSSMMFQYFVKIVPTVYV--KVDGEVLRTNQFSVTRHEKMTNGLIGDQGLPGVFVLYELSPMMVKFTEKHRSFTHFLTGVCAIIGGVFTVAGLIDSLIYYSTRAIQKKIELGK 387          
BLAST of CX675692 vs. ExPASy Swiss-Prot
Match: ERGI3_DANRE (Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Danio rerio GN=ergic3 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 3.188e-20
Identity = 67/212 (31.60%), Postives = 105/212 (49.53%), Query Frame = -2
Query:  303 KRPAPKAGGCRIEGYVRVKKVPGNLIISA-----RSGAH-----SFDTSEMNMSHVISHLSFGRKLSPKVMSDVQRLIPYLGGSHDRLNGRSFINHREVGANVTIEHYLQIVKTEVITRRYSREHSLLEEYEYTAHSSLVQSIY----IPAAKFHFELSPMQVVITEDPKSFSHFITNVCAIIGGVFTVAGILDAILHNTMR-LMKKVEIGK 893
            K    K  GC++ G++ V KV GN   +      +S  H     SF    +NM+H I HLSFG+     V                  N     N     A++  +++++IV T  +  +   E     ++  T H  +   +     +P     +ELSPM V  TE  +SF+HF+T VCAIIGGVFTVAG++D++++++ R + KK+E+GK
Sbjct:  190 KMQEQKNEGCQVYGFLEVNKVAGNFHFAPGKSFQQSHVHVHDLQSFGLDNINMTHFIKHLSFGKDYPGIV------------------NPLDDTNVAAPQASMMYQYFVKIVPTIYV--KGDGEVVKTNQFSVTRHEKIANGLIGDQGLPGVFVLYELSPMMVKFTEKQRSFTHFLTGVCAIIGGVFTVAGLIDSLIYHSARAIQKKIELGK 381          
BLAST of CX675692 vs. ExPASy Swiss-Prot
Match: ERGI1_XENLA (Endoplasmic reticulum-Golgi intermediate compartment protein 1 OS=Xenopus laevis GN=ergic1 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 3.188e-20
Identity = 72/214 (33.64%), Postives = 108/214 (50.47%), Query Frame = -2
Query:  303 GKHKT--TAENVKRPAPKAGGCRIEGYVRVKKVPGNLIISARSGAHSFDTSEMNMSHVISHLSFGRKLSPKVMSDVQRLIPYLGGSHDRLNGRSFINHREVGANVTIEHYLQIVKTEVITRRYSREHSLLEEYEYT-AHSSLVQSIY----IPAAKFHFELSPMQVVITEDPKSFSHFITNVCAIIGGVFTVAGILDAILHNTMRLMKKVEIGK 923
            G+H+      ++K P   A GCR EG   + KVPGN  +S  S       +  +M H+I  LSFG  L    + ++      LGG+ D+L  ++  +H         ++ L+IV T        ++ S    Y+YT A+ + V   +    +PA  F ++LSP+ V  TE  +    FIT VCAIIGG FTVAGILD+ +       KK+++GK
Sbjct:   94 GRHEVGHIDNSMKIPINNAYGCRFEGLFSINKVPGNFHVSTHSAIAQ--PANPDMRHIIHKLSFGNTLQ---VDNIHGAFNALGGA-DKLASKALESH---------DYVLKIVPTVYEDLNGKQQFS----YQYTVANKAYVAYSHTGRVVPAIWFRYDLSPITVKYTERRQPMYRFITTVCAIIGGTFTVAGILDSFIFTASEAWKKIQLGK 288          
BLAST of CX675692 vs. ExPASy Swiss-Prot
Match: ERGI3_PONAB (Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Pongo abelii GN=ERGIC3 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 7.103e-20
Identity = 64/212 (30.19%), Postives = 105/212 (49.53%), Query Frame = -2
Query:  303 KRPAPKAGGCRIEGYVRVKKVPGNLIISA-----RSGAH-----SFDTSEMNMSHVISHLSFGRKLSPKVMSDVQRLIPYLGGSHDRLNGRSFINHREVGANVTIEHYLQIVKTEVITRRYSREHSLLEEYEYTAHSSLVQSIY----IPAAKFHFELSPMQVVITEDPKSFSHFITNVCAIIGGVFTVAGILDAILHNTMR-LMKKVEIGK 893
            K    K  GC++ G++ V KV GN   +      +S  H     SF    +NM+H I HLSFG      V                  N     N     A++  ++++++V T  +  +   E     ++  T H  +   +     +P     +ELSPM V +TE  +SF+HF+T VCAIIGG+FTVAG++D++++++ R + KK+++GK
Sbjct:  190 KMQEQKNEGCQVYGFLEVNKVAGNFHFAPGKSFQQSHVHVHDLQSFGLDNINMTHYIQHLSFGEDYPGIV------------------NPLDHTNVTAPQASMMFQYFVKVVPT--VYMKVDGEVLRTNQFSVTRHEKVANGLLGDQGLPGVFVLYELSPMMVKLTEKHRSFTHFLTGVCAIIGGMFTVAGLIDSLIYHSARAIQKKIDLGK 381          
BLAST of CX675692 vs. ExPASy Swiss-Prot
Match: ERGI3_MOUSE (Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Mus musculus GN=Ergic3 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 7.103e-20
Identity = 64/212 (30.19%), Postives = 105/212 (49.53%), Query Frame = -2
Query:  303 KRPAPKAGGCRIEGYVRVKKVPGNLIISA-----RSGAH-----SFDTSEMNMSHVISHLSFGRKLSPKVMSDVQRLIPYLGGSHDRLNGRSFINHREVGANVTIEHYLQIVKTEVITRRYSREHSLLEEYEYTAHSSLVQSIY----IPAAKFHFELSPMQVVITEDPKSFSHFITNVCAIIGGVFTVAGILDAILHNTMR-LMKKVEIGK 893
            K    K  GC++ G++ V KV GN   +      +S  H     SF    +NM+H I HLSFG      V                  N     N     A++  ++++++V T  +  +   E     ++  T H  +   +     +P     +ELSPM V +TE  +SF+HF+T VCAIIGG+FTVAG++D++++++ R + KK+++GK
Sbjct:  190 KMQEQKNEGCQVYGFLEVNKVAGNFHFAPGKSFQQSHVHVHDLQSFGLDNINMTHYIKHLSFGEDYPGIV------------------NPLDHTNVTAPQASMMFQYFVKVVPT--VYMKVDGEVLRTNQFSVTRHEKVANGLLGDQGLPGVFVLYELSPMMVKLTEKHRSFTHFLTGVCAIIGGMFTVAGLIDSLIYHSARAIQKKIDLGK 381          
BLAST of CX675692 vs. ExPASy Swiss-Prot
Match: ERGI3_MACFA (Endoplasmic reticulum-Golgi intermediate compartment protein 3 OS=Macaca fascicularis GN=ERGIC3 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 7.103e-20
Identity = 64/212 (30.19%), Postives = 105/212 (49.53%), Query Frame = -2
Query:  303 KRPAPKAGGCRIEGYVRVKKVPGNLIISA-----RSGAH-----SFDTSEMNMSHVISHLSFGRKLSPKVMSDVQRLIPYLGGSHDRLNGRSFINHREVGANVTIEHYLQIVKTEVITRRYSREHSLLEEYEYTAHSSLVQSIY----IPAAKFHFELSPMQVVITEDPKSFSHFITNVCAIIGGVFTVAGILDAILHNTMR-LMKKVEIGK 893
            K    K  GC++ G++ V KV GN   +      +S  H     SF    +NM+H I HLSFG      V                  N     N     A++  ++++++V T  +  +   E     ++  T H  +   +     +P     +ELSPM V +TE  +SF+HF+T VCAIIGG+FTVAG++D++++++ R + KK+++GK
Sbjct:  189 KMQEQKNEGCQVYGFLEVNKVAGNFHFAPGKSFQQSHVHVHDLQSFGLDNINMTHYIQHLSFGEDYPGIV------------------NPLDHTNVTAPQASMMFQYFVKVVPT--VYMKVDGEVLRTNQFSVTRHEKVANGLLGDQGLPGVFVLYELSPMMVKLTEKHRSFTHFLTGVCAIIGGMFTVAGLIDSLIYHSARAIQKKIDLGK 380          
The following BLAST results are available for this feature:
BLAST of CX675692 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
ERGI1_DANRE4.024e-2335.21Endoplasmic reticulum-Golgi intermediate compartme... [more]
ERGI1_HUMAN4.449e-2234.74Endoplasmic reticulum-Golgi intermediate compartme... [more]
ERGI1_MOUSE9.911e-2234.74Endoplasmic reticulum-Golgi intermediate compartme... [more]
ERGI3_XENTR2.208e-2132.55Endoplasmic reticulum-Golgi intermediate compartme... [more]
ERGI3_XENLA1.869e-2030.88Endoplasmic reticulum-Golgi intermediate compartme... [more]
ERGI3_DANRE3.188e-2031.60Endoplasmic reticulum-Golgi intermediate compartme... [more]
ERGI1_XENLA3.188e-2033.64Endoplasmic reticulum-Golgi intermediate compartme... [more]
ERGI3_PONAB7.103e-2030.19Endoplasmic reticulum-Golgi intermediate compartme... [more]
ERGI3_MOUSE7.103e-2030.19Endoplasmic reticulum-Golgi intermediate compartme... [more]
ERGI3_MACFA7.103e-2030.19Endoplasmic reticulum-Golgi intermediate compartme... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_64B02_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-64B02-C4-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675692 ID=CX675692; Name=CX675692; organism=Citrus sinensis; type=EST; length=936bp
TTTTTTTTTTCTTGACAAATTGTAGTCATTCCTCTGTGCAATTATTCTCA
TTTTTTTTCGAAAGAGAAAGTAACATAACAAAAGGAGTATATACAAGTAT
TAATTCAAGCTATTAAAACTCTTAAAATGATTGTTACTGACAAAAGCAAT
TGAGTTGAGAAATCAGACTTCTAATGCTTCATTGCACATCTGGAAATGGG
TGCATTACAATTGTTTTGACAAGATATATAGTCCTTACTAGTAAATGTAG
TAGTATAGAAAATTTAAGATTCCCTACAAATTTCACCTCTGTATCAAAAA
TTCTTGCCTATTTCAACCTTTTTCATCAATCTCATTGTATTATGTAAAAT
TGCATCCAAAATCCCAGCAACCGTGAAAACACCCCCAATTATAGCACAGA
CATTGGTGATGAAGTGTGAAAAAGACTTTGGATCTTCTGTTATCACAACC
TGCATGGGAGAGAGCTCAAAATGGAACTTTGCAGCTGGTATATATATGCT
TTGAACCAGGCTGCTATGGGCTGTGTATTCGTACTCCTCAAGTAATGAAT
GTTCACGGGAATATCTTCTGGTTATCACCTCGGTTTTAACTATTTGAAGA
TAATGCTCTATAGTAACATTTGCGCCTACTTCCCGATGATTAATGAATGA
CCGACCATTCAGCCTGTCGTGGCTTCCACCAAGATAAGGTATCAATCGCT
GAACATCACTCATCACCTTAGGGGACAGTTTCCGACCAAATGAGAGATGG
GATATAACATGTGACATATTCATTTCAGAAGTATCAAATGAATGGGCTCC
GGAACGAGCTGAGATGATAAGATTACCGGGAACCTTCTTCACACGCACAT
ATCCTTCAATTCTGCATCCTCCTGCCTTTGGTGCTGGTCTTTTTACATTT
TCAGCAGTAGTTTTATGTTTACCATCCAAAGCTAGC
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