CK939491

Overview
NameCK939491
Unique NameCK939491
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length759
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig892 contig Csv1_Contig892:65..823. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK939491 vs. ExPASy Swiss-Prot
Match: RUBA_ARATH (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Arabidopsis thaliana GN=At2g28000 PE=1 SV=2)

HSP 1 Score: 312.768 bits (800), Expect = 1.322e-84
Identity = 167/217 (76.96%), Postives = 184/217 (84.79%), Query Frame = 2
Query:  119 MASVNALSSASILCSPKXXXXXXXXXXXXXXXXXXXX----FAVRASAKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDG 757
            MAS NALSSAS+LCS +                        F+VRA+ K+IAFDQ SRAA+QAGIDKL+D VGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIEL + MENAGAALIREVASKTNDSAGDGTTTAS+LAREIIK GLLSVTSGANPVSLKRGIDKTV GL+EEL+K+ARP++GRDDI+AVA+ISAGNDDLIG+MIADAIDKVGPDG
Sbjct:    1 MASANALSSASVLCSSRQSKLGGGNQQQGQRVSYNKRTIRRFSVRANVKEIAFDQHSRAALQAGIDKLADCVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELPNAMENAGAALIREVASKTNDSAGDGTTTASILAREIIKHGLLSVTSGANPVSLKRGIDKTVQGLIEELQKKARPVKGRDDIRAVASISAGNDDLIGSMIADAIDKVGPDG 217          
BLAST of CK939491 vs. ExPASy Swiss-Prot
Match: RUBA_PEA (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 309.301 bits (791), Expect = 1.461e-83
Identity = 169/218 (77.52%), Postives = 181/218 (83.03%), Query Frame = 2
Query:  119 MASVNALSSASILCSPKXXXXXXXXXXXXXXXXXXXX-----FAVRASAKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDG 757
            MAS NALSS SIL SP                          F V+A+AKDIAFDQ SR+AMQAGIDKL+DAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIEL DPMENAGAALIREVASKTNDSAGDGTTTAS+LAREIIKLGLL+VTSGANPVS+K+GIDKTV  LVEELEK ARP++G DDIKAVATISAGND+LIG MIA+AIDKVGPDG
Sbjct:    1 MASTNALSSTSILRSPTNQAQTSLSKKVKQHGRVNFRQKPNRFVVKAAAKDIAFDQHSRSAMQAGIDKLADAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELPDPMENAGAALIREVASKTNDSAGDGTTTASILAREIIKLGLLNVTSGANPVSIKKGIDKTVAALVEELEKLARPVKGGDDIKAVATISAGNDELIGKMIAEAIDKVGPDG 218          
BLAST of CK939491 vs. ExPASy Swiss-Prot
Match: RUB2_BRANA (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 308.145 bits (788), Expect = 3.256e-83
Identity = 167/216 (77.31%), Postives = 180/216 (83.33%), Query Frame = 2
Query:  119 MASVNALSSASILCSP---KXXXXXXXXXXXXXXXXXXXXFAVRASAKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDG 757
            MA+ NALSS S+LCS    K                    F++RA+ K+IAFDQ SRAA+QAGIDKL+DAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIEL D MENAGAALIREVASKTNDSAGDGTTTASVLAREIIK GLLSVTSGANPVSLKRGIDKTV  L+EELEKR+RP++G  DIKAVATISAGND+LIG MIADAIDKVGPDG
Sbjct:    1 MATANALSSPSVLCSSRQGKLSGGSQQKGQRVSYRKANRRFSLRANVKEIAFDQSSRAALQAGIDKLADAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELPDAMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKHGLLSVTSGANPVSLKRGIDKTVQALIEELEKRSRPVKGGRDIKAVATISAGNDELIGAMIADAIDKVGPDG 216          
BLAST of CK939491 vs. ExPASy Swiss-Prot
Match: RUB1_BRANA (RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment) OS=Brassica napus PE=2 SV=2)

HSP 1 Score: 301.982 bits (772), Expect = 2.333e-81
Identity = 156/176 (88.64%), Postives = 167/176 (94.89%), Query Frame = 2
Query:  230 FAVRASAKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDG 757
            F+VRA+ K+I+FDQ SRAA+QAGIDKL+DAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIEL D MENAGAALIREVASKTNDSAGDGTTTASVLAREIIK GLLSVTSGANPVSLKRGIDKTV  L+EELEKRARP++G  DIKAVATISAGND+L+GTMIADAIDKVGPDG
Sbjct:    2 FSVRANVKEISFDQSSRAALQAGIDKLADAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELPDAMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKHGLLSVTSGANPVSLKRGIDKTVQALIEELEKRARPVKGGSDIKAVATISAGNDELVGTMIADAIDKVGPDG 177          
BLAST of CK939491 vs. ExPASy Swiss-Prot
Match: RUBA_WHEAT (RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment) OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 289.271 bits (739), Expect = 1.565e-77
Identity = 146/172 (84.88%), Postives = 165/172 (95.93%), Query Frame = 2
Query:  242 ASAKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDG 757
            A AK+IAFDQ SRAA+QAG++KL++AVG+TLGPRGRNVVLDE+G+PKVVNDGVTIARAIELA+PMENAGAALIREVASKTNDSAGDGTTTA VLAREIIKLG+LSVTSGANPVSLK+GIDKTV GL+EELE++ARP++G  DIKAVA+ISAGND+LIG MIADAIDKVGPDG
Sbjct:    2 ADAKEIAFDQKSRAALQAGVEKLANAVGVTLGPRGRNVVLDEYGNPKVVNDGVTIARAIELANPMENAGAALIREVASKTNDSAGDGTTTACVLAREIIKLGILSVTSGANPVSLKKGIDKTVQGLIEELERKARPVKGSGDIKAVASISAGNDELIGAMIADAIDKVGPDG 173          
BLAST of CK939491 vs. ExPASy Swiss-Prot
Match: RUBA_RICCO (RuBisCO large subunit-binding protein subunit alpha (Fragment) OS=Ricinus communis PE=2 SV=1)

HSP 1 Score: 287.73 bits (735), Expect = 4.554e-77
Identity = 146/160 (91.25%), Postives = 157/160 (98.12%), Query Frame = 2
Query:  278 RAAMQAGIDKLSDAVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDG 757
            R A+Q+GIDKL+DAVGLTLGPRGRNVVLDEFGSPKVVN+GVTIARAIEL DPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVS+KRGIDKTV GL+EELEK+ARP++GRDDIKAVA+ISAGND+LIGTMIADAIDKVGPDG
Sbjct:    1 RTALQSGIDKLADAVGLTLGPRGRNVVLDEFGSPKVVNEGVTIARAIELPDPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSIKRGIDKTVQGLIEELEKKARPVKGRDDIKAVASISAGNDELIGTMIADAIDKVGPDG 160          
BLAST of CK939491 vs. ExPASy Swiss-Prot
Match: RUBA_CHLRE (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 9.218e-62
Identity = 119/173 (68.79%), Postives = 150/173 (86.71%), Query Frame = 2
Query:  242 ASAKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDG 757
            A AK+I FDQ SR  +QAGI+K++DAVG+TLGPRGRNVVL++ FG P+V+NDGV+I RAIEL DP+ENAGA LI+EVA +TND+AGDGTTTASVLARE+I  GL SVT+GANP+++KRG+DKT   LV +L++ A+P++GRDDIK VA+ISAGND+ IG MIADA+DKVG +G
Sbjct:   34 ADAKEIVFDQESRRRLQAGINKVADAVGVTLGPRGRNVVLEQKFGVPQVINDGVSIRRAIELKDPVENAGAQLIKEVAGRTNDAAGDGTTTASVLAREMIHYGLQSVTAGANPIAVKRGLDKTAEYLVAKLKEHAKPVKGRDDIKNVASISAGNDNAIGEMIADALDKVGSNG 206          
BLAST of CK939491 vs. ExPASy Swiss-Prot
Match: CH601_ACAM1 (60 kDa chaperonin 1 OS=Acaryochloris marina (strain MBIC 11017) GN=groL1 PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 3.176e-54
Identity = 105/171 (61.40%), Postives = 142/171 (83.04%), Query Frame = 2
Query:  248 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDG 757
            AK + FD+ SR A++ G++ L+DAV +TLGP+GRNVVL++ FG+P+++NDGVTIA+ +EL DP+ENAGA L+REVASKTND AGDGTTTA+VLA+ +I+ GL +V +GANPV+L++GIDKT+  LV+E+E +++P+ G D I  VATISAGND  +G MIA A+DKVG DG
Sbjct:    2 AKHVVFDEESRRALERGVNSLADAVRITLGPKGRNVVLEKKFGAPQIINDGVTIAKEVELEDPLENAGAQLMREVASKTNDVAGDGTTTATVLAQALIREGLKNVAAGANPVALRKGIDKTIDALVKEIEAKSKPVAG-DAIAQVATISAGNDTEVGQMIAQAMDKVGKDG 171          
BLAST of CK939491 vs. ExPASy Swiss-Prot
Match: CH602_GLOVI (60 kDa chaperonin 2 OS=Gloeobacter violaceus GN=groL2 PE=3 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 2.058e-53
Identity = 106/171 (61.99%), Postives = 140/171 (81.87%), Query Frame = 2
Query:  248 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDG 757
            AK I FD+ +R A++ G++ L+DAV +TLGP+GRNVVL++ FG+P++VNDGVTIA+ IEL DP+EN GA LIREVASKTND AGDGTTTA+VLA+ +I+ GL +V +GANP+SLKRG++KTV  LV+E+   A+P+E    I  VATIS+GND+ IG MIA+A+DKVG +G
Sbjct:    2 AKMIVFDETARRALERGVNALADAVRVTLGPKGRNVVLEKKFGAPQIVNDGVTIAKEIELEDPLENTGAQLIREVASKTNDVAGDGTTTATVLAQALIREGLRNVAAGANPMSLKRGMEKTVAKLVQEIAAMAKPVEDNKTIAEVATISSGNDEEIGQMIAEAMDKVGKEG 172          
BLAST of CK939491 vs. ExPASy Swiss-Prot
Match: CH602_SYNJB (60 kDa chaperonin 2 OS=Synechococcus sp. GN=groL2 PE=3 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.742e-52
Identity = 102/171 (59.65%), Postives = 140/171 (81.87%), Query Frame = 2
Query:  248 AKDIAFDQISRAAMQAGIDKLSDAVGLTLGPRGRNVVLDE-FGSPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVHGLVEELEKRARPIEGRDDIKAVATISAGNDDLIGTMIADAIDKVGPDG 757
            AK I F + +R A++ GI++L+DA+ +T+GP+GRNVVL++ FG+P++VNDGVTIA+ IELADP+EN GA L+REVASKTND AGDGTTTA++LA+ +++ GL ++++GANPV+L+RGI+KT   LVE++   A+P+EGR  I  VATISAGND  +G MIA A+D VG DG
Sbjct:    2 AKRILFREEARKALEQGINQLADAIKVTIGPKGRNVVLEKKFGAPQIVNDGVTIAKEIELADPLENTGAQLMREVASKTNDVAGDGTTTATILAQSMVREGLKNISAGANPVALRRGIEKTTAYLVEQIAAHAKPVEGRKTIAEVATISAGNDSEVGEMIAKAMDAVGRDG 172          
The following BLAST results are available for this feature:
BLAST of CK939491 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RUBA_ARATH1.322e-8476.96RuBisCO large subunit-binding protein subunit alph... [more]
RUBA_PEA1.461e-8377.52RuBisCO large subunit-binding protein subunit alph... [more]
RUB2_BRANA3.256e-8377.31RuBisCO large subunit-binding protein subunit alph... [more]
RUB1_BRANA2.333e-8188.64RuBisCO large subunit-binding protein subunit alph... [more]
RUBA_WHEAT1.565e-7784.88RuBisCO large subunit-binding protein subunit alph... [more]
RUBA_RICCO4.554e-7791.25RuBisCO large subunit-binding protein subunit alph... [more]
RUBA_CHLRE9.218e-6268.79RuBisCO large subunit-binding protein subunit alph... [more]
CH601_ACAM13.176e-5461.4060 kDa chaperonin 1 OS=Acaryochloris marina (strai... [more]
CH602_GLOVI2.058e-5361.9960 kDa chaperonin 2 OS=Gloeobacter violaceus GN=gr... [more]
CH602_SYNJB1.742e-5259.6560 kDa chaperonin 2 OS=Synechococcus sp. GN=groL2 ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004749_G11 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IF_G11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939491 ID=CK939491; Name=CK939491; organism=Citrus sinensis; type=EST; length=759bp
GGGGATAGCTAAACCCTAAGCTCCCCAAGTCCTCTCGCAGCTTCTACTTG
TTGTTGGTACCTTATCCGAAACAATTTCCCTCAGCAGACGCTTTACTCCG
TTTGGTTGATTGTTCGAAATGGCTTCTGTTAACGCCCTTTCTTCGGCTTC
CATTCTTTGCTCTCCCAAACAGGGGAGCTTGAGGAGGAGAGGAAATCAGA
ATCAGGGTCAGAGAGTAAATTACAGGAGATTCGCTGTTAGAGCGTCTGCC
AAAGATATTGCTTTTGACCAGATCTCCAGGGCCGCAATGCAGGCCGGCAT
CGATAAGCTTTCCGATGCTGTTGGCCTTACTCTGGGTCCAAGAGGGAGAA
ATGTTGTTCTGGATGAATTTGGAAGTCCGAAAGTGGTTAATGATGGAGTA
ACAATAGCCCGAGCTATTGAGCTCGCAGATCCCATGGAAAATGCTGGTGC
TGCTCTTATTAGGGAGGTTGCAAGCAAAACCAATGACTCTGCTGGTGATG
GAACAACAACTGCATCAGTTCTTGCGCGAGAAATAATTAAACTAGGACTC
CTGAGTGTCACGTCTGGTGCAAATCCTGTCTCCTTGAAGAGAGGGATTGA
TAAAACTGTACATGGGTTGGTAGAAGAGTTGGAGAAGAGGGCCAGGCCTA
TCGAAGGTCGTGATGATATCAAAGCTGTTGCTACCATCTCTGCTGGGAAT
GATGACCTGATTGGGACAATGATCGCCGATGCAATTGACAAGGTCGGTCC
TGATGGCGT
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