CK939484

Overview
NameCK939484
Unique NameCK939484
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length614
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5271 contig Csv1_Contig5271:249..862. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK939484 vs. ExPASy Swiss-Prot
Match: LEA5_CITSI (Late embryogenesis abundant protein Lea5 OS=Citrus sinensis GN=LEA5 PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 4.311e-47
Identity = 94/97 (96.91%), Postives = 94/97 (96.91%), Query Frame = 2
Query:  155 MARSLFKAKLLLAPVADGISLSIGRRGYAAAAPLGTISRTGIMEKNDLTPAVREDSGVSSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH 445
            MARSLFKAKLLLAPVADGISLSI RRGYAAAAPLGTISRTGIMEKNDL PAVREDSG SSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH
Sbjct:    1 MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLGTISRTGIMEKNDLRPAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH 97          
BLAST of CK939484 vs. ExPASy Swiss-Prot
Match: LEA5D_GOSHI (Late embryogenesis abundant protein Lea5-D OS=Gossypium hirsutum GN=LEA5-D PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.064e-21
Identity = 56/104 (53.85%), Postives = 68/104 (65.38%), Query Frame = 2
Query:  155 MARSLFKAKLLLAPVADGISLSIGRRGYAAAAPLG---TISRTGIMEKNDLTPAVREDSG-----VSSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRA 442
            MARS+   KLL A + DG+ +SI RRGY+ A P     +  R G M K +   A++E S       SSAWAPDP+TGYYRPEN   EID AELREMLLNH+VR+
Sbjct:    1 MARSVSSFKLLGASIFDGLYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRDAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAAELREMLLNHRVRS 104          
BLAST of CK939484 vs. ExPASy Swiss-Prot
Match: LEA5A_GOSHI (Late embryogenesis abundant protein Lea5-A OS=Gossypium hirsutum GN=LEA5-A PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.912e-19
Identity = 53/104 (50.96%), Postives = 66/104 (63.46%), Query Frame = 2
Query:  155 MARSLFKAKLLLAPVADGISLSIGRRGYAAAAPLG---TISRTGIMEKNDLTPAVREDSG-----VSSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRA 442
            MARS+   K L A V D + +SI RRGY+ A P     +  R G M K +   A++E S       SSAWAPDP+TGYYRPEN   EID A+LREM+LNH+VR+
Sbjct:    1 MARSVSSFKFLGASVFDALYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRYAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAADLREMMLNHRVRS 104          
BLAST of CK939484 vs. ExPASy Swiss-Prot
Match: ARG2_PHAAU (Indole-3-acetic acid-induced protein ARG2 OS=Phaseolus aureus GN=ARG2 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.493e-11
Identity = 42/97 (43.30%), Postives = 55/97 (56.70%), Query Frame = 2
Query:  155 MARSLFKAKLLLAPVADGISLSIGRRGYAAAAPLG-TISRTGIMEKNDLTPAVREDS---GVSSAWAPDPITGYYRPENRAVEIDPAELREMLLNHK 433
            MARS    K+L A VADG S +  R G+AAAA    + +R G     ++ P   E+    G   +W PDP+TGYYRPEN   EID A++R  +L  K
Sbjct:    1 MARSFTNVKVLSALVADGFSNTTTRHGFAAAAAATQSATRGGASIGGNMVPKSGEEKVRGGEKVSWVPDPVTGYYRPEN-TNEIDVADMRATVLGKK 96          
The following BLAST results are available for this feature:
BLAST of CK939484 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
LEA5_CITSI4.311e-4796.91Late embryogenesis abundant protein Lea5 OS=Citrus... [more]
LEA5D_GOSHI4.064e-2153.85Late embryogenesis abundant protein Lea5-D OS=Goss... [more]
LEA5A_GOSHI2.912e-1950.96Late embryogenesis abundant protein Lea5-A OS=Goss... [more]
ARG2_PHAAU8.493e-1143.30Indole-3-acetic acid-induced protein ARG2 OS=Phase... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004750_A03 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IIF_A03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939484 ID=CK939484; Name=CK939484; organism=Citrus sinensis; type=EST; length=614bp
GGGGCTCACAAGCACAGCACAAAGAGAGCGAGCCGCTAGCTTTTGCCTAT
AGCTACTGCAGGAGCAGAATCTTTCTTCTTCTGTAGTAGCACTGTACAGA
AACATCCCAGCTAGCTATCTTCATATCTATTAAGTTCTATAAGTAAATAA
AACAATGGCCCGCTCTCTCTTCAAAGCTAAGCTTCTTCTTGCTCCTGTTG
CTGATGGCATCTCGCTCTCCATTGGCAGGAGAGGATATGCTGCAGCAGCA
CCCTTGGGAACCATATCTCGGACTGGTATCATGGAGAAAAATGATTTGAC
GCCTGCGGTGAGAGAGGATTCTGGGGTCTCTTCTGCCTGGGCCCCAGATC
CCATCACTGGGTACTACAGGCCGGAGAATCGGGCGGTCGAGATTGATCCA
GCAGAGCTTCGAGAGATGCTGTTGAACCACAAAGTCAGGGCACACTAGGG
AGTGGTCGCGCATAGCAGCAGATCCTTTGCTGTTAGCGGTGCTTTAACTT
TTAAGTGATGTTGTTACAGTAGCAATTTTGACTCACTCTAAAGTCTTTGC
TGTTGTTTTGATATCAACTGTTATTTACAACTTTTAGAAAAAAAAAAAAA
AAAAAAAAAAAAAA
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