CX675690

Overview
NameCX675690
Unique NameCX675690
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length807
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675690 vs. ExPASy Swiss-Prot
Match: CNGC1_ARATH (Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana GN=CNGC1 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.618e-25
Identity = 61/120 (50.83%), Postives = 82/120 (68.33%), Query Frame = 2
Query:  242 VEEFGNWSDSSLERLCDVVKPVVFTERSYILREGNPIDQMLFVLQGKLWTYTSRSITGFSSNSGNLNN-HLEDGDFSGEELIAWAKADRDSSNLPISTKTIQALTNVEAFVLMADDLKQV 598
            V  F    +  L+ LCD ++PV++TE SYI+REG+P+D+MLF+++GKL T T+         +G LN+ +L  GDF GEEL+ WA     SSNLPIST+T++AL  VEAF L ADDLK V
Sbjct:  484 VPMFEKMDEQLLDALCDRLQPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNG-----GRTGFLNSEYLGAGDFCGEELLTWALDPHSSSNLPISTRTVRALMEVEAFALKADDLKFV 598          
BLAST of CX675690 vs. ExPASy Swiss-Prot
Match: CNGC6_ARATH (Probable cyclic nucleotide-gated ion channel 6 OS=Arabidopsis thaliana GN=CNGC6 PE=1 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.437e-23
Identity = 54/117 (46.15%), Postives = 82/117 (70.09%), Query Frame = 2
Query:  251 FGNWSDSSLERLCDVVKPVVFTERSYILREGNPIDQMLFVLQGKLWTYTSRSITGFSSNSGNLNNHL-EDGDFSGEELIAWAKADRDSSNLPISTKTIQALTNVEAFVLMADDLKQV 598
            F N  +  L+ +C+ +KP +FTE+SY++REG+P+++MLF+++G+L      S+T     SG  N  L ++GDF G+EL+ WA   +  SNLP ST+T++ALT VEAF L+AD+LK V
Sbjct:  515 FENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRL-----ESVTTDGGRSGFYNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFV 626          
BLAST of CX675690 vs. ExPASy Swiss-Prot
Match: CNGC9_ARATH (Putative cyclic nucleotide-gated ion channel 9 OS=Arabidopsis thaliana GN=CNGC9 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.130e-23
Identity = 54/117 (46.15%), Postives = 80/117 (68.38%), Query Frame = 2
Query:  251 FGNWSDSSLERLCDVVKPVVFTERSYILREGNPIDQMLFVLQGKLWTYTSRSITGFSSNSGNLNNHL-EDGDFSGEELIAWAKADRDSSNLPISTKTIQALTNVEAFVLMADDLKQV 598
            F N  +  L+ +C+ +KP ++TE SY++REG+P+++MLF+++G+L      S+T     SG  N  L ++GDF GEEL+ WA   +  SNLP ST+T +ALT VEAF L+AD+LK V
Sbjct:  514 FENMDERLLDAICERLKPCLYTESSYLVREGDPVNEMLFIIRGRL-----ESVTTDGGRSGFFNRSLLKEGDFCGEELLTWALDPKSGSNLPSSTRTAKALTEVEAFALIADELKFV 625          
BLAST of CX675690 vs. ExPASy Swiss-Prot
Match: CNG13_ARATH (Putative cyclic nucleotide-gated ion channel 13 OS=Arabidopsis thaliana GN=CNGC13 PE=2 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 7.130e-23
Identity = 55/109 (50.46%), Postives = 78/109 (71.56%), Query Frame = 2
Query:  275 LERLCDVVKPVVFTERSYILREGNPIDQMLFVLQGKLWTYTSRS-ITGFSSNSGNLNNHLEDGDFSGEELIAWAKADRDSSNLPISTKTIQALTNVEAFVLMADDLKQV 598
            L+ +CD +KPV++TE SY +REG+P+++MLFV++GKL + T+    TGF +       +L+  DF GE+L+ WA   + SS+ PIST+T+QALT VEAF L ADDLK V
Sbjct:  483 LDAVCDKLKPVLYTENSYAIREGDPVEEMLFVMRGKLMSATTNGGRTGFFNAV-----YLKPSDFCGEDLLTWALDPQSSSHFPISTRTVQALTEVEAFALAADDLKLV 586          
BLAST of CX675690 vs. ExPASy Swiss-Prot
Match: CNGC7_ARATH (Putative cyclic nucleotide-gated ion channel 7 OS=Arabidopsis thaliana GN=CNGC7 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.709e-22
Identity = 53/117 (45.30%), Postives = 80/117 (68.38%), Query Frame = 2
Query:  251 FGNWSDSSLERLCDVVKPVVFTERSYILREGNPIDQMLFVLQGKLWTYTSRSITGFSSNSGNLNNHL-EDGDFSGEELIAWAKADRDSSNLPISTKTIQALTNVEAFVLMADDLKQV 598
            F N  +  L+ +C+ +KP +FTE +YI+REG+P+++M+F+++G+L      S+T     SG  N  L ++GDF GEEL+ WA   +  SNLP ST+T++ALT VEAF L A++LK V
Sbjct:  503 FANMDERLLDAICERLKPSLFTESTYIVREGDPVNEMMFIIRGRL-----ESVTTDGGRSGFFNRGLLKEGDFCGEELLTWALDPKAGSNLPSSTRTVKALTEVEAFALEAEELKFV 614          
BLAST of CX675690 vs. ExPASy Swiss-Prot
Match: CNGC8_ARATH (Putative cyclic nucleotide-gated ion channel 8 OS=Arabidopsis thaliana GN=CNGC8 PE=2 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 3.539e-22
Identity = 53/117 (45.30%), Postives = 80/117 (68.38%), Query Frame = 2
Query:  251 FGNWSDSSLERLCDVVKPVVFTERSYILREGNPIDQMLFVLQGKLWTYTSRSITGFSSNSGNLNNHL-EDGDFSGEELIAWAKADRDSSNLPISTKTIQALTNVEAFVLMADDLKQV 598
            F N  +  L+ +C+ +KP ++TE +YI+REG+P+++MLF+++G+L      S+T     SG  N  L ++GDF GEEL+ WA   +  SNLP ST+T++ALT VEAF L A++LK V
Sbjct:  509 FANMDERLLDAICERLKPSLYTESTYIVREGDPVNEMLFIIRGRL-----ESVTTDGGRSGFFNRGLLKEGDFCGEELLTWALDPKAGSNLPSSTRTVKALTEVEAFALEAEELKFV 620          
BLAST of CX675690 vs. ExPASy Swiss-Prot
Match: CNG10_ARATH (Probable cyclic nucleotide-gated ion channel 10 OS=Arabidopsis thaliana GN=CNGC10 PE=2 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.345e-21
Identity = 52/109 (47.71%), Postives = 77/109 (70.64%), Query Frame = 2
Query:  275 LERLCDVVKPVVFTERSYILREGNPIDQMLFVLQGKLWTYTSRSITGFSSNSGNLNN-HLEDGDFSGEELIAWAKADRDSSNLPISTKTIQALTNVEAFVLMADDLKQV 598
            L+ +CD ++PV++TE SY++REG+P+ +MLFV++G+L + T+         SG  N  +L+  DF GE+L+ WA   + SS+ PIST+T+QALT VEAF L A+DLK V
Sbjct:  482 LDAVCDRLRPVLYTENSYVIREGDPVGEMLFVMRGRLVSATTNG-----GRSGFFNAVNLKASDFCGEDLLPWALDPQSSSHFPISTRTVQALTEVEAFALTAEDLKSV 585          
BLAST of CX675690 vs. ExPASy Swiss-Prot
Match: CNGC5_ARATH (Probable cyclic nucleotide-gated ion channel 5 OS=Arabidopsis thaliana GN=CNGC5 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.912e-21
Identity = 51/117 (43.59%), Postives = 78/117 (66.67%), Query Frame = 2
Query:  251 FGNWSDSSLERLCDVVKPVVFTERSYILREGNPIDQMLFVLQGKLWTYTSRSITGFSSNSGNLNNHL-EDGDFSGEELIAWAKADRDSSNLPISTKTIQALTNVEAFVLMADDLKQV 598
            F +  D  L+ +C  +KP +FTE +Y++REG+P+D+MLF+++G+L      S+T     SG  N  L ++G+F GEEL+ WA   +   NLP ST+T++ALT VEAF L +++LK V
Sbjct:  499 FKSMDDKLLDAICMRLKPCLFTESTYLVREGDPVDEMLFIIRGRL-----ESVTTDGGRSGFFNRSLLKEGEFCGEELLTWALDPKSGVNLPSSTRTVKALTEVEAFALTSEELKFV 610          
BLAST of CX675690 vs. ExPASy Swiss-Prot
Match: CNG16_ARATH (Probable cyclic nucleotide-gated ion channel 16 OS=Arabidopsis thaliana GN=CNGC16 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.100e-18
Identity = 47/117 (40.17%), Postives = 74/117 (63.25%), Query Frame = 2
Query:  251 FGNWSDSSLERLCDVVKPVVFTERSYILREGNPIDQMLFVLQGKLWTYTSRSITGFSSNSGNLNN-HLEDGDFSGEELIAWAKADRDSSNLPISTKTIQALTNVEAFVLMADDLKQV 598
            F    D  L+ +C+ + P + T+ +Y++REG+P+++MLF+++G++      S T     SG  N+  L  GDF GEEL+ WA     + NLP+ST+T++ L+ VEAF L A+DLK V
Sbjct:  458 FAQMDDQLLDAICERLVPSLNTKDTYVIREGDPVNEMLFIIRGQM-----ESSTTDGGRSGFFNSITLRPGDFCGEELLTWALVPNINHNLPLSTRTVRTLSEVEAFALRAEDLKFV 569          
BLAST of CX675690 vs. ExPASy Swiss-Prot
Match: CNG14_ARATH (Probable cyclic nucleotide-gated ion channel 14 OS=Arabidopsis thaliana GN=CNGC14 PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 3.100e-18
Identity = 50/117 (42.74%), Postives = 74/117 (63.25%), Query Frame = 2
Query:  251 FGNWSDSSLERLCDVVKPVVFTERSYILREGNPIDQMLFVLQGKLWTYTSRS-ITGFSSNSGNLNNHLEDGDFSGEELIAWAKADRDSSNLPISTKTIQALTNVEAFVLMADDLKQV 598
            F    D  L+ +C+ +   + T+ +YI+REG+P+ +MLF+++GKL + T+    TGF ++       L  GDF GEEL+AWA   + + NLP ST+T++AL  VEAF L A DLK V
Sbjct:  482 FAQMDDQLLDAICERLASSLSTQGNYIVREGDPVTEMLFIIRGKLESSTTNGGRTGFFNSIT-----LRPGDFCGEELLAWALLPKSTVNLPSSTRTVRALEEVEAFALQAGDLKFV 593          
The following BLAST results are available for this feature:
BLAST of CX675690 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
CNGC1_ARATH2.618e-2550.83Cyclic nucleotide-gated ion channel 1 OS=Arabidops... [more]
CNGC6_ARATH1.437e-2346.15Probable cyclic nucleotide-gated ion channel 6 OS=... [more]
CNGC9_ARATH7.130e-2346.15Putative cyclic nucleotide-gated ion channel 9 OS=... [more]
CNG13_ARATH7.130e-2350.46Putative cyclic nucleotide-gated ion channel 13 OS... [more]
CNGC7_ARATH2.709e-2245.30Putative cyclic nucleotide-gated ion channel 7 OS=... [more]
CNGC8_ARATH3.539e-2245.30Putative cyclic nucleotide-gated ion channel 8 OS=... [more]
CNG10_ARATH1.345e-2147.71Probable cyclic nucleotide-gated ion channel 10 OS... [more]
CNGC5_ARATH3.912e-2143.59Probable cyclic nucleotide-gated ion channel 5 OS=... [more]
CNG16_ARATH3.100e-1840.17Probable cyclic nucleotide-gated ion channel 16 OS... [more]
CNG14_ARATH3.100e-1842.74Probable cyclic nucleotide-gated ion channel 14 OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_64B01_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-64B01-C2-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675690 ID=CX675690; Name=CX675690; organism=Citrus sinensis; type=EST; length=807bp
GTAAATGTTTGTAACTGTTTGAACTTTTGCATAGTTTTGAAAGCGCAATC
GCTAAAGTCCACATCACCTCAACGTGAACTCAAACCTGATATGTTTTAGT
GTTAGGGAATGAATCTCATTTCAGCTGAGATAGTTCTAGATCACATTTTA
TTTTCAATTTTCTTCATTCAGCAGCTGAATTTCATTATCAGCATCATGCC
TTTTAGATTATAGTAACGATATTGGATGTATGTTTGTATAGGTAGAAGAG
TTTGGAAACTGGAGTGATTCATCGTTGGAGAGATTGTGTGATGTTGTGAA
GCCGGTTGTCTTCACAGAGCGCTCTTACATTCTCCGGGAGGGAAACCCAA
TTGATCAAATGCTCTTCGTGCTGCAAGGCAAGTTATGGACCTACACTTCC
AGGAGCATAACTGGATTCTCAAGCAATTCTGGTAACCTGAACAACCATCT
GGAAGATGGTGACTTTTCTGGAGAAGAACTCATTGCTTGGGCAAAGGCTG
ACCGCGACTCATCCAACCTCCCTATATCAACTAAAACAATTCAAGCTCTT
ACAAATGTTGAAGCATTTGTTCTTATGGCAGATGATTTAAAGCAGGTACT
ATTGAATATTGATCATTAAGCAAAACATTGCACTGGATGTATACATGTAT
TCTGACAAACTAGATGGAGTGCACAAGCGTCCGCACAAGGAACGCCACCA
TCGCCATCTACAATAATATTTGGGCGTTCAGATCTGGTACAGCAACGTTA
GTATTTTAGGCCTTGTTCATGATCTTAATTAAGGACCTATCTCAATAATA
AATTTGG
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