CK939477

Overview
NameCK939477
Unique NameCK939477
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length883
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CK939477 vs. ExPASy Swiss-Prot
Match: APL_ARATH (Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 9.154e-14
Identity = 34/60 (56.67%), Postives = 48/60 (80.00%), Query Frame = 2 
Query:  704 LSMTPANKSRMRWTPELHEAFVEAVNRLGGGERATPKGVLKLMNVENLTIYHVKSHLQKY 883
            L +T   K R+RWT ELHE FV+AV +LGG ++ATPK ++++M V+ LT+YH+KSHLQK+
Sbjct:   27 LVLTTDPKPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKF 86
[Close]
BLAST of CK939477 vs. ExPASy Swiss-Prot
Match: MYBF_ARATH (Putative Myb family transcription factor At1g14600 OS=Arabidopsis thaliana GN=At1g14600 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.749e-13
Identity = 35/51 (68.63%), Postives = 42/51 (82.35%), Query Frame = 2 
Query:  731 RMRWTPELHEAFVEAVNRLGGGERATPKGVLKLMNVENLTIYHVKSHLQKY 883
            R+RWTPELH +FV AV+ LGG  +ATPK VLK+M+V+ LTI HVKSHLQ Y
Sbjct:   25 RLRWTPELHRSFVHAVDLLGGQYKATPKLVLKIMDVKGLTISHVKSHLQMY 75
The following BLAST results are available for this feature:
BLAST of CK939477 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
APL_ARATH9.154e-1456.67Myb family transcription factor APL OS=Arabidopsis... [more]
MYBF_ARATH7.749e-1368.63Putative Myb family transcription factor At1g14600... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004750_B06 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IIF_B06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939477 ID=CK939477; Name=CK939477; organism=Citrus sinensis; type=EST; length=883bp
GGGGGAATCAGGAAAGAATTTTTTCATCATCTTTTTGATAGCTTGCGTAC
GCGCGGTTGGGTGGCTTCTAAAATTCTATCCAATCATTTGCTTCTCACAA
TTCAATCTCTCGATTCTAACGTCAGTTACAGTTTCAGCAGAGAGGGAGCC
GATGTCCAACCCACAACAGATTTCTGCATCGTCATCCCGATTCCCAGACA
ATATGCATCTTTCTTCTGTCTCGCCACATGGAAGGTACTCCCAAAATTCT
CCTTTCATTTCTCAATCATTAAGAGATGAAGCAAGATTGCGGTCGACCCA
TTTCTCTCCATCAGAAGGACAACCTACACCTTTGATTAATCACCCTGAGG
AAAATAAGGATAATTCCTGGTGTATAGATCCACTTCAGGATTTTCTTGAT
TTTCCTGAAAATGACCCCGGACAGACTGGTCTGCTGGAAAGTAATACTGG
TGATATCGCATCTGATGATCGTGCTAAGAGAATTGAGTGGTGGGCAGATC
AGCTCATCTCTGTTGAAGATGGTCCAGAACCAAATTGGTCTGAGGTTCTT
GCTGATGTTAATGTCACAGATGCCAGACAAAAGGTGCTGAAACCATCTAC
GGATATCCCAACACAACACCCTCAAGTTCACCCTCAAGTTCACCCCCAAG
GTCAACAACATCAGCCTGTGTCAAATGAAGAATTTCATGCTGTTGCTAAT
CCATTGTCCATGACACCAGCAAACAAATCCAGAATGCGTTGGACTCCAGA
ACTTCATGAGGCATTTGTGGAGGCTGTCAATCGGCTGGGTGGCGGTGAAC
GAGCTACTCCAAAAGGTGTCTTAAAGCTCATGAATGTTGAAAATCTGACC
ATTTATCATGTTAAAAGCCACCTCCAGAAATAT
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