CX675689

Overview
NameCX675689
Unique NameCX675689
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length807
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675689 vs. ExPASy Swiss-Prot
Match: STAD_CUCSA (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 324.709 bits (831), Expect = 3.735e-88
Identity = 153/199 (76.88%), Postives = 172/199 (86.43%), Query Frame = 1
Query:  208 THSMPPEKVEVFKSLETWATNNVLPLLKPVEKCWQPQDFLPDPTLPFSDFTDQVRALRERTAGLPDDYFVVLVGDMITEDAIPTYQTMINTLDGVRDETGASSSPWAIWNRSWTAEENRHGDLLRSFLYLSGRVDMLMIEKTVQYLISAGMDPGTENNPYLGFVYTSFQERATFISHGNTARLSKEGGDPVLARICGTI 804
            THSMPP+K+E+FKSLE WA  N+L  LKPVE+CWQPQDFLPD    F  F +QVR LRER   LPD+YFVVLVGDMITE+A+PTYQTM+NTLDGVRDETGAS +PWAIW R+WTAEENRHGDLL  +LYLSGRVDM  +EKT+QYLI +GMDP TENNPYLGF+YTSFQERATFISHGNTARL+KE GD  LA+ICGTI
Sbjct:   62 THSMPPQKMEIFKSLEDWAEENLLVHLKPVERCWQPQDFLPDSA--FEGFHEQVRELRERAKELPDEYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASPTPWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQVEKTIQYLIGSGMDPRTENNPYLGFIYTSFQERATFISHGNTARLAKEHGDIKLAQICGTI 258          
BLAST of CX675689 vs. ExPASy Swiss-Prot
Match: STAD_RICCO (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Ricinus communis PE=1 SV=1)

HSP 1 Score: 322.783 bits (826), Expect = 1.419e-87
Identity = 161/259 (62.16%), Postives = 191/259 (73.75%), Query Frame = 1
Query:   55 MQASQFLVTSTKPPAACSPLVPNPAHNRL----TAASSTVRFRKISAVAAPPKPK----THSMPPEKVEVFKSLETWATNNVLPLLKPVEKCWQPQDFLPDPTLPFSDFTDQVRALRERTAGLPDDYFVVLVGDMITEDAIPTYQTMINTLDGVRDETGASSSPWAIWNRSWTAEENRHGDLLRSFLYLSGRVDMLMIEKTVQYLISAGMDPGTENNPYLGFVYTSFQERATFISHGNTARLSKEGGDPVLARICGTIA 807
            ++ + FL  + K P+   P + +    +     T  S +     +     PP+      THSMPP+K+E+FKSL+ WA  N+L  LKPVEKCWQPQDFLPDP      F +QVR LRER   +PDDYFVVLVGDMITE+A+PTYQTM+NTLDGVRDETGAS + WAIW R+WTAEENRHGDLL  +LYLSGRVDM  IEKT+QYLI +GMDP TEN+PYLGF+YTSFQERATFISHGNTAR +KE GD  LA+ICGTIA
Sbjct:    3 LKLNPFLSQTQKLPSFALPPMASTRSPKFYMASTLKSGSKEVENLKKPFMPPREVHVQVTHSMPPQKIEIFKSLDNWAEENILVHLKPVEKCWQPQDFLPDPAS--DGFDEQVRELRERAKEIPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASPTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDPRTENSPYLGFIYTSFQERATFISHGNTARQAKEHGDIKLAQICGTIA 259          
BLAST of CX675689 vs. ExPASy Swiss-Prot
Match: STAD_SOYBN (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Glycine max GN=ACPD PE=2 SV=1)

HSP 1 Score: 322.398 bits (825), Expect = 1.854e-87
Identity = 157/226 (69.47%), Postives = 179/226 (79.20%), Query Frame = 1
Query:  142 TAASSTVRFRKISAVAAPPKPK----THSMPPEKVEVFKSLETWATNNVLPLLKPVEKCWQPQDFLPDPTLPFSDFTDQVRALRERTAGLPDDYFVVLVGDMITEDAIPTYQTMINTLDGVRDETGASSSPWAIWNRSWTAEENRHGDLLRSFLYLSGRVDMLMIEKTVQYLISAGMDPGTENNPYLGFVYTSFQERATFISHGNTARLSKEGGDPVLARICGTIA 807
            T  S +     I     PP+      THSMPP+K+E+F+SLE WA  N+L  LKPVEKCWQPQDFLPDP+     F +QV+ LRER   LPDDYFVVLVGDMITE+A+PTYQTM+NTLDGVRDETGAS + WAIW R+WTAEENRHGDLL  +LYLSGRVDM  IEKT+QYLI +GMDP TEN+PYLGF+YTSFQERATFISHGNTARL+KE GD  LA+ICG IA
Sbjct:   31 TLRSGSKEVENIKKPFTPPREVHVQVTHSMPPQKIEIFQSLEDWAEENILAHLKPVEKCWQPQDFLPDPSS--DGFEEQVKELRERAKELPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASLTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKTIQYLIGSGMDPRTENSPYLGFIYTSFQERATFISHGNTARLAKEHGDIKLAQICGMIA 254          
BLAST of CX675689 vs. ExPASy Swiss-Prot
Match: STAD_SIMCH (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Simmondsia chinensis PE=2 SV=1)

HSP 1 Score: 322.398 bits (825), Expect = 1.854e-87
Identity = 163/249 (65.46%), Postives = 190/249 (76.31%), Query Frame = 1
Query:   97 AACSPLVPNPAH---NRLTAASSTVRF--RKISAVAAPPKP-------KTHSMPPEKVEVFKSLETWATNNVLPLLKPVEKCWQPQDFLPDPTLPFSDFTDQVRALRERTAGLPDDYFVVLVGDMITEDAIPTYQTMINTLDGVRDETGASSSPWAIWNRSWTAEENRHGDLLRSFLYLSGRVDMLMIEKTVQYLISAGMDPGTENNPYLGFVYTSFQERATFISHGNTARLSKEGGDPVLARICGTIA 807
            A  S  +P   H   +R+  ASST+    ++I     P  P       KTHSMPP+K+E+FKSLE WA  NVL  LKPVEKCWQPQDFLPDP      F DQV+ LRERT  +PD+Y VVLVGDMITE+A+PTYQTM+NTLDGVRDETGAS + WAIW R+WTAEENRHGDLL  +LYL+GRVDM  IEKT+QYLI +GMDP +ENNPYLGF+YTSFQERATFISHGNTARL+K+ GD  LA++CG IA
Sbjct:   15 AVTSSGLPRSYHLRSHRVFMASSTIGITSKEIPNAKKPHMPPREAHVQKTHSMPPQKIEIFKSLEGWAEENVLVHLKPVEKCWQPQDFLPDPAS--EGFMDQVKELRERTKEIPDEYLVVLVGDMITEEALPTYQTMLNTLDGVRDETGASLTSWAIWTRAWTAEENRHGDLLNKYLYLTGRVDMKQIEKTIQYLIGSGMDPRSENNPYLGFIYTSFQERATFISHGNTARLAKDHGDFQLAQVCGIIA 261          
BLAST of CX675689 vs. ExPASy Swiss-Prot
Match: STAD_SOLCO (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Solanum commersonii PE=2 SV=2)

HSP 1 Score: 320.857 bits (821), Expect = 5.394e-87
Identity = 162/251 (64.54%), Postives = 185/251 (73.71%), Query Frame = 1
Query:   67 QFLVTSTKPPAACSPLVPNPAHNRLTAASSTVRFRKISAVAAPPKPK----THSMPPEKVEVFKSLETWATNNVLPLLKPVEKCWQPQDFLPDPTLPFSDFTDQVRALRERTAGLPDDYFVVLVGDMITEDAIPTYQTMINTLDGVRDETGASSSPWAIWNRSWTAEENRHGDLLRSFLYLSGRVDMLMIEKTVQYLISAGMDPGTENNPYLGFVYTSFQERATFISHGNTARLSKEGGDPVLARICGTIA 807
            Q + T+ +P   CSPL         T    +V    +    +PP+      THSMPPEK E+F SL  WA NN+L  LKPVEKCWQ  DFLPDP      F DQV+ LRER   +PDDYFVVLVGDMITE+A+PTYQTM+NTLDGVRDETGAS +PWAIW R+WTAEENRHGDLL  +LYLSGRVDM  IEKT+QYLI +GMDP TENNPYLGF+YTSFQERATFISHGNTAR +KE GD  LA++CG IA
Sbjct:   11 QSIKTTRRP---CSPLRSPRVFMASTLRPPSVEDGNVKKPFSPPREVHVQVTHSMPPEKREIFDSLHGWADNNILVHLKPVEKCWQASDFLPDPAS--EGFEDQVKELRERCKEIPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASLTPWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDPRTENNPYLGFIYTSFQERATFISHGNTARHAKEHGDMKLAQVCGIIA 256          
BLAST of CX675689 vs. ExPASy Swiss-Prot
Match: STAD_BRANA (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 319.701 bits (818), Expect = 1.202e-86
Identity = 160/250 (64.00%), Postives = 188/250 (75.20%), Query Frame = 1
Query:   79 TSTKPPAACSPLVPNPAHNRLTAASSTVRFRKISAVAAPPKPKT-------HSMPPEKVEVFKSLETWATNNVLPLLKPVEKCWQPQDFLPDPTLPFSDFTDQVRALRERTAGLPDDYFVVLVGDMITEDAIPTYQTMINTLDGVRDETGASSSPWAIWNRSWTAEENRHGDLLRSFLYLSGRVDMLMIEKTVQYLISAGMDPGTENNPYLGFVYTSFQERATFISHGNTARLSKEGGDPVLARICGTIA 807
            +S +PP +      +P    L ++S  +  +++ ++  P  P         HSMPP+K+E+FKS+E WA  N+L  LK VEK WQPQDFLPDP      F DQVR LRER   LPDDYFVVLVGDMITE+A+PTYQTM+NTLDGVRDETGAS + WAIW R+WTAEENRHGDLL  +LYLSGRVDM  IEKT+QYLI +GMDP TENNPYLGF+YTSFQERATFISHGNTAR +KE GD  LA+ICGTIA
Sbjct:   17 SSARPPIST---FRSPKFLCLASSSPALSSKEVESLKKPFTPPKEVHVQVLHSMPPQKIEIFKSMEDWAEQNLLTQLKDVEKSWQPQDFLPDPAS--DGFEDQVRELRERARELPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASPTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDPRTENNPYLGFIYTSFQERATFISHGNTARQAKEHGDLKLAQICGTIA 261          
BLAST of CX675689 vs. ExPASy Swiss-Prot
Match: STAD_ELAGV (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Elaeis guineensis var. tenera PE=2 SV=2)

HSP 1 Score: 317.39 bits (812), Expect = 5.964e-86
Identity = 154/231 (66.67%), Postives = 182/231 (78.79%), Query Frame = 1
Query:  136 RLTAASSTVRFRKISAVAAPPKPK-------THSMPPEKVEVFKSLETWATNNVLPLLKPVEKCWQPQDFLPDPTLPFSDFTDQVRALRERTAGLPDDYFVVLVGDMITEDAIPTYQTMINTLDGVRDETGASSSPWAIWNRSWTAEENRHGDLLRSFLYLSGRVDMLMIEKTVQYLISAGMDPGTENNPYLGFVYTSFQERATFISHGNTARLSKEGGDPVLARICGTIA 807
            R++ AS+     K+     P  P        THSMPP+K+E+FKSLE WA NN+L  LKPVEKCWQPQDFLPDP+     F ++V+ LRER+  +PD Y+V LVGDMITE+A+PTYQTM+NTLDGVRDETGAS + WA+W R+WTAEENRHGDLL  +LYLSGRVDM  IEKT+QYLI +GMDP TEN+PYLGF+YTSFQERATFISHGNTAR +KE GD  LA+ICGTIA
Sbjct:   28 RISMASTVGPSTKVEIPKKPFMPPREVHVQVTHSMPPQKIEIFKSLEDWAENNILVHLKPVEKCWQPQDFLPDPSS--EGFHEEVKELRERSKEIPDGYYVCLVGDMITEEALPTYQTMLNTLDGVRDETGASLTSWAVWTRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKTIQYLIGSGMDPRTENSPYLGFIYTSFQERATFISHGNTARHAKEHGDVKLAQICGTIA 256          
BLAST of CX675689 vs. ExPASy Swiss-Prot
Match: STAD_CARTI (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Carthamus tinctorius PE=1 SV=1)

HSP 1 Score: 317.39 bits (812), Expect = 5.964e-86
Identity = 152/226 (67.26%), Postives = 179/226 (79.20%), Query Frame = 1
Query:  142 TAASSTVRFRKISAVAAPPKPK----THSMPPEKVEVFKSLETWATNNVLPLLKPVEKCWQPQDFLPDPTLPFSDFTDQVRALRERTAGLPDDYFVVLVGDMITEDAIPTYQTMINTLDGVRDETGASSSPWAIWNRSWTAEENRHGDLLRSFLYLSGRVDMLMIEKTVQYLISAGMDPGTENNPYLGFVYTSFQERATFISHGNTARLSKEGGDPVLARICGTIA 807
            T  SST +         PP+      THSMPP+K+E+FKS+E WA  N+L  LKPVEKCWQ QDFLPDP      F +QV+ LR R   +PDDYFVVLVGDMITE+A+PTYQTM+NTLDGVRDETGAS +PWA+W R+WTAEENRHGDLL ++LYLSGRVDM  I+KT+QYLI +GMDP TEN+PYLGF+YTSFQERATF+SHGNTAR +K+ GD  LA+ICGTIA
Sbjct:   36 TLGSSTPKVDNAKKPFQPPREVHVQVTHSMPPQKIEIFKSIEGWAEQNILVHLKPVEKCWQAQDFLPDPAS--EGFDEQVKELRARAKEIPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASLTPWAVWTRAWTAEENRHGDLLHTYLYLSGRVDMRQIQKTIQYLIGSGMDPRTENSPYLGFIYTSFQERATFVSHGNTARHAKDHGDVKLAQICGTIA 259          
BLAST of CX675689 vs. ExPASy Swiss-Prot
Match: STAD_ORYSJ (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Oryza sativa subsp. japonica GN=Os04g0379900 PE=2 SV=1)

HSP 1 Score: 315.464 bits (807), Expect = 2.266e-85
Identity = 155/253 (61.26%), Postives = 191/253 (75.49%), Query Frame = 1
Query:   70 FLVTSTKPPAACSPLVPNPAH--NRLTAASSTV-RFRKISAVAAPPKPK----THSMPPEKVEVFKSLETWATNNVLPLLKPVEKCWQPQDFLPDPTLPFSDFTDQVRALRERTAGLPDDYFVVLVGDMITEDAIPTYQTMINTLDGVRDETGASSSPWAIWNRSWTAEENRHGDLLRSFLYLSGRVDMLMIEKTVQYLISAGMDPGTENNPYLGFVYTSFQERATFISHGNTARLSKEGGDPVLARICGTIA 807
            F  + T  P +C  +    ++  +++ A +ST+ R +       PP+       HS+PP+K E+F SL+ WA  N+L LLKPVEK WQPQDFLPDP+     F D+V+ LRER   +PDDYFV LVGDM+TE+A+PTYQTM+NTLDGVRDETGAS + WA+W R+WTAEENRHGDLL  ++YL+GRVDM  IEKT+QYLI +GMDPGTENNPYLGF+YTSFQERATFISHGNTAR +KE GD  LA+ICGTIA
Sbjct:    3 FAASHTASPYSCGGVAQRRSNGMSKMVAMASTINRVKTAKKPYTPPREVHLQVKHSLPPQKREIFDSLQPWAKENLLNLLKPVEKSWQPQDFLPDPSS--DGFYDEVKELRERAKEIPDDYFVCLVGDMVTEEALPTYQTMLNTLDGVRDETGASPTTWAVWTRAWTAEENRHGDLLNKYMYLTGRVDMKQIEKTIQYLIGSGMDPGTENNPYLGFLYTSFQERATFISHGNTARHAKEYGDLKLAQICGTIA 253          
BLAST of CX675689 vs. ExPASy Swiss-Prot
Match: STAD_GOSHI (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 314.309 bits (804), Expect = 5.049e-85
Identity = 149/204 (73.04%), Postives = 169/204 (82.84%), Query Frame = 1
Query:  196 PKPKTHSMPPEKVEVFKSLETWATNNVLPLLKPVEKCWQPQDFLPDPTLPFSDFTDQVRALRERTAGLPDDYFVVLVGDMITEDAIPTYQTMINTLDGVRDETGASSSPWAIWNRSWTAEENRHGDLLRSFLYLSGRVDMLMIEKTVQYLISAGMDPGTENNPYLGFVYTSFQERATFISHGNTARLSKEGGDPVLARICGTIA 807
            P   THSMPP K+E+FKSLE WA NN+L  LKPVEKCWQP DFLPDP      F +QV+ LRER   +PDDYFVVLVGDMITE+A+ TYQTM+NTLDG RDETGAS +PWAIW R+WTAEENRHGDLL  +LYLSGRVDM  IE+T+QYLI +GMDP TEN+PY GF+YTSFQERATFISHGNT RL+KE GD  LA+ICG+IA
Sbjct:   58 PVQITHSMPPHKIEIFKSLEGWAENNILTHLKPVEKCWQPADFLPDPNS--DGFHEQVKELRERAKEIPDDYFVVLVGDMITEEALSTYQTMLNTLDGTRDETGASLTPWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIERTIQYLIGSGMDPHTENSPYRGFIYTSFQERATFISHGNTGRLAKEYGDINLAQICGSIA 259          
The following BLAST results are available for this feature:
BLAST of CX675689 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
STAD_CUCSA3.735e-8876.88Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_RICCO1.419e-8762.16Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_SOYBN1.854e-8769.47Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_SIMCH1.854e-8765.46Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_SOLCO5.394e-8764.54Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_BRANA1.202e-8664.00Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_ELAGV5.964e-8666.67Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_CARTI5.964e-8667.26Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_ORYSJ2.266e-8561.26Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_GOSHI5.049e-8573.04Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_64A08_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-64A08-A16-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675689 ID=CX675689; Name=CX675689; organism=Citrus sinensis; type=EST; length=807bp
CACAAAACCAGTTCAAGAAAAAGACGCACACTCCCTGTGCTAAGTGCCAC
CACCATGCAAGCCTCTCAGTTTCTCGTCACTTCCACCAAACCTCCTGCTG
CGTGCTCTCCACTTGTCCCAAATCCCGCCCACAATCGTCTAACCGCCGCA
TCCTCCACCGTCCGATTCCGGAAAATCTCTGCCGTCGCAGCACCACCGAA
ACCAAAAACACATTCAATGCCACCCGAAAAAGTCGAAGTCTTCAAGTCAC
TAGAAACCTGGGCCACCAATAACGTGTTACCATTACTCAAACCAGTAGAG
AAATGCTGGCAGCCCCAAGACTTCTTACCCGATCCGACGCTGCCTTTTTC
GGACTTCACTGACCAAGTCAGGGCCCTACGTGAACGCACTGCGGGGCTAC
CTGACGATTACTTTGTTGTGCTGGTGGGTGACATGATCACTGAAGACGCC
ATTCCCACTTATCAGACGATGATTAATACGCTCGATGGTGTCAGAGATGA
GACCGGTGCAAGTTCCAGCCCATGGGCTATTTGGAACCGCTCCTGGACTG
CTGAGGAAAACCGCCATGGAGATTTGCTCAGGAGCTTCTTGTATTTGTCG
GGTCGGGTCGATATGCTCATGATTGAGAAGACTGTCCAGTATCTTATCAG
TGCTGGCATGGACCCTGGGACAGAGAACAACCCGTATTTGGGCTTTGTTT
ACACATCGTTTCAAGAGCGCGCCACTTTCATATCACACGGCAACACGGCC
CGCCTGTCGAAAGAGGGAGGTGATCCAGTGCTCGCGCGCATATGTGGAAC
CATTGCA
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