CX675688

Overview
NameCX675688
Unique NameCX675688
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length892
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5516 contig Csv1_Contig5516:1..895. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675688 vs. ExPASy Swiss-Prot
Match: STAD_CARTI (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Carthamus tinctorius PE=1 SV=1)

HSP 1 Score: 348.206 bits (892), Expect = 3.672e-95
Identity = 167/243 (68.72%), Postives = 197/243 (81.07%), Query Frame = -3
Query:  162 DETGASSSPWAIWNRSWTAEENRHGDLLRSLWYSSGRVDMLMIEKTVQYLISAGMDPGTENNPYLGFVYTSFQERATFISHGNTARLSKEGGDPVLARICGTIASDEKRHENAYARIVEKLLEVDPTGAMIAIADLMNKKITMPAHLMYDGHDPRLFAHFAAVAQRLGVYTAHDYADILEFLIGRWXXXXXXXXXXXGRRAQEFVCGLAPRIRRLQELADQRAKKLKPPLVKFSWIFNRELSL 890
            DETGAS +PWA+W R+WTAEENRHGDLL +  Y SGRVDM  I+KT+QYLI +GMDP TEN+PYLGF+YTSFQERATF+SHGNTAR +K+ GD  LA+ICGTIASDEKRHE AY +IVEKL E+DP G ++A AD+M KKI+MPAHLMYDG D  LF HF+AVAQRLGVYTA DYADILEFL+GRW           GR+AQ++VCGL PRIRRL+E A  RAK  + P+V FSWIF+R++ L
Sbjct:  156 DETGASLTPWAVWTRAWTAEENRHGDLLHTYLYLSGRVDMRQIQKTIQYLIGSGMDPRTENSPYLGFIYTSFQERATFVSHGNTARHAKDHGDVKLAQICGTIASDEKRHETAYTKIVEKLFEIDPDGTVLAFADMMRKKISMPAHLMYDGRDDNLFEHFSAVAQRLGVYTAKDYADILEFLVGRWKVADLTGLSGEGRKAQDYVCGLPPRIRRLEERAQGRAK--EGPVVPFSWIFDRQVKL 396          
BLAST of CX675688 vs. ExPASy Swiss-Prot
Match: STAD_SOLCO (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Solanum commersonii PE=2 SV=2)

HSP 1 Score: 344.354 bits (882), Expect = 5.302e-94
Identity = 165/243 (67.90%), Postives = 193/243 (79.42%), Query Frame = -3
Query:  162 DETGASSSPWAIWNRSWTAEENRHGDLLRSLWYSSGRVDMLMIEKTVQYLISAGMDPGTENNPYLGFVYTSFQERATFISHGNTARLSKEGGDPVLARICGTIASDEKRHENAYARIVEKLLEVDPTGAMIAIADLMNKKITMPAHLMYDGHDPRLFAHFAAVAQRLGVYTAHDYADILEFLIGRWXXXXXXXXXXXGRRAQEFVCGLAPRIRRLQELADQRAKKLKPPLVKFSWIFNRELSL 890
            DETGAS +PWAIW R+WTAEENRHGDLL    Y SGRVDM  IEKT+QYLI +GMDP TENNPYLGF+YTSFQERATFISHGNTAR +KE GD  LA++CG IA+DEKRHE AY +IVEKL EVDP G ++A+AD+M KKI+MPAHLMYDG D  LF HF+ VAQRLGVYTA DYADILEFL+GRW           G +A+++VCGLAPRIR+L+E A  RAK+  P  V FSW+F +++ L
Sbjct:  153 DETGASLTPWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDPRTENNPYLGFIYTSFQERATFISHGNTARHAKEHGDMKLAQVCGIIAADEKRHETAYTKIVEKLFEVDPDGTVLAVADMMRKKISMPAHLMYDGRDDNLFEHFSTVAQRLGVYTAKDYADILEFLVGRWEIEKLTGLSGEGHKARDYVCGLAPRIRKLEERAQARAKQKAP--VPFSWVFGKDIKL 393          
BLAST of CX675688 vs. ExPASy Swiss-Prot
Match: STAD_OLEEU (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Olea europaea PE=2 SV=1)

HSP 1 Score: 342.813 bits (878), Expect = 1.543e-93
Identity = 166/243 (68.31%), Postives = 192/243 (79.01%), Query Frame = -3
Query:  162 DETGASSSPWAIWNRSWTAEENRHGDLLRSLWYSSGRVDMLMIEKTVQYLISAGMDPGTENNPYLGFVYTSFQERATFISHGNTARLSKEGGDPVLARICGTIASDEKRHENAYARIVEKLLEVDPTGAMIAIADLMNKKITMPAHLMYDGHDPRLFAHFAAVAQRLGVYTAHDYADILEFLIGRWXXXXXXXXXXXGRRAQEFVCGLAPRIRRLQELADQRAKKLKPPLVKFSWIFNRELSL 890
            DETGAS +PWAIW R+WTAEENRHGDLL    Y SGRVDM  IEKT+QYLI +GMDP TENNPYLGF+YTSFQERATFISHGNTARL+KE GD  LA+ICG IA+DEKRHE AY +IVEKL E+DP G ++A+AD+M KK++MPAHLMYDG D  LF +F++VAQRLGVYTA DYADILEFL+GRW           GR+AQ++VC L PRIRRL+E A  R KK       FSWIF RE++L
Sbjct:  150 DETGASLTPWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKTIQYLIGSGMDPRTENNPYLGFIYTSFQERATFISHGNTARLAKEHGDLKLAQICGIIAADEKRHETAYTKIVEKLFEIDPDGTVLALADMMRKKVSMPAHLMYDGQDDNLFENFSSVAQRLGVYTAKDYADILEFLVGRWDIEKLTGLSGEGRKAQDYVCTLPPRIRRLEERAQSRVKKAS--ATPFSWIFGREINL 390          
BLAST of CX675688 vs. ExPASy Swiss-Prot
Match: STAD_SOLTU (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 341.273 bits (874), Expect = 4.489e-93
Identity = 167/243 (68.72%), Postives = 192/243 (79.01%), Query Frame = -3
Query:  162 DETGASSSPWAIWNRSWTAEENRHGDLLRSLWYSSGRVDMLMIEKTVQYLISAGMDPGTENNPYLGFVYTSFQERATFISHGNTARLSKEGGDPVLARICGTIASDEKRHENAYARIVEKLLEVDPTGAMIAIADLMNKKITMPAHLMYDGHDPRLFAHFAAVAQRLGVYTAHDYADILEFLIGRWXXXXXXXXXXXGRRAQEFVCGLAPRIRRLQELADQRAKKLKPPLVKFSWIFNRELSL 890
            DETGA+ +PWAIW R+WTAEENRHGDLL    Y SGRVDM  IEKT+QYLI +GMDP TENNPYLGFVYTS ++  TF+SHGNTARL+KE GD  LA+ICG+IA+DEKRHE AY +IVEKLLEVDP GA++AI D+M K I+MPAHLMYDG D  LF HF+AVAQRLGVYTA DYADILEF +GRW           GRRAQ++VCGLAPRIR+L+E A  RAK  K   V FSWIF +E+ L
Sbjct:  153 DETGATVTPWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKTIQYLIGSGMDPRTENNPYLGFVYTSLRKGVTFVSHGNTARLAKEHGDMKLAQICGSIAADEKRHETAYTKIVEKLLEVDPDGAVLAIGDMMRKNISMPAHLMYDGRDDNLFEHFSAVAQRLGVYTAKDYADILEFHVGRWEVEKLTGLSSEGRRAQDYVCGLAPRIRKLEERAQARAKHAKS--VPFSWIFGKEIKL 393          
BLAST of CX675688 vs. ExPASy Swiss-Prot
Match: STAD_BRANA (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 340.887 bits (873), Expect = 5.862e-93
Identity = 168/243 (69.14%), Postives = 191/243 (78.60%), Query Frame = -3
Query:  162 DETGASSSPWAIWNRSWTAEENRHGDLLRSLWYSSGRVDMLMIEKTVQYLISAGMDPGTENNPYLGFVYTSFQERATFISHGNTARLSKEGGDPVLARICGTIASDEKRHENAYARIVEKLLEVDPTGAMIAIADLMNKKITMPAHLMYDGHDPRLFAHFAAVAQRLGVYTAHDYADILEFLIGRWXXXXXXXXXXXGRRAQEFVCGLAPRIRRLQELADQRAKKLKPPLVKFSWIFNRELSL 890
            DETGAS + WAIW R+WTAEENRHGDLL    Y SGRVDM  IEKT+QYLI +GMDP TENNPYLGF+YTSFQERATFISHGNTAR +KE GD  LA+ICGTIA+DEKRHE AY +IVEKL E+DP G ++A AD+M KKI+MPAHLMYDG D  LF +F++VAQRLGVYTA DYADILEFL+GRW           G +AQE++CGL PRIRRL E A  RAK  K P V FSWI +RE+ L
Sbjct:  158 DETGASPTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDPRTENNPYLGFIYTSFQERATFISHGNTARQAKEHGDLKLAQICGTIAADEKRHETAYTKIVEKLFEIDPDGTVMAFADMMRKKISMPAHLMYDGRDESLFDNFSSVAQRLGVYTAKDYADILEFLVGRWKIESLTGLSGEGNKAQEYLCGLTPRIRRLDERAQARAK--KGPKVPFSWIHDREVQL 398          
BLAST of CX675688 vs. ExPASy Swiss-Prot
Match: STADS_BRANA (Acyl-[acyl-carrier-protein] desaturase, seed specific, chloroplastic OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 340.887 bits (873), Expect = 5.862e-93
Identity = 166/243 (68.31%), Postives = 191/243 (78.60%), Query Frame = -3
Query:  162 DETGASSSPWAIWNRSWTAEENRHGDLLRSLWYSSGRVDMLMIEKTVQYLISAGMDPGTENNPYLGFVYTSFQERATFISHGNTARLSKEGGDPVLARICGTIASDEKRHENAYARIVEKLLEVDPTGAMIAIADLMNKKITMPAHLMYDGHDPRLFAHFAAVAQRLGVYTAHDYADILEFLIGRWXXXXXXXXXXXGRRAQEFVCGLAPRIRRLQELADQRAKKLKPPLVKFSWIFNRELSL 890
            DETGAS + WA+W R+WTAEENRHGDLL    Y SGRVDM  IEKT+QYLI +GMDP TENNPYLGF+YTSFQERATF+SHGNTAR +KE GD  LA+ICGTIA+DEKRHE AY +IVEKLLE+DP G ++A AD+M KKI+MPAHLMYDG D  LF +F++VAQRLGVYTA DYADILEFL GRW           G +AQE++CGL PRIRRL E A  RAK  K P + FSWI +RE+ L
Sbjct:  159 DETGASPTSWAVWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDPRTENNPYLGFIYTSFQERATFVSHGNTARQAKEHGDLKLAQICGTIAADEKRHETAYTKIVEKLLEIDPDGTVVAFADMMRKKISMPAHLMYDGRDDNLFDNFSSVAQRLGVYTAKDYADILEFLAGRWRIESLTGLSGEGNKAQEYLCGLTPRIRRLDERAQARAK--KGPKIPFSWIHDREVQL 399          
BLAST of CX675688 vs. ExPASy Swiss-Prot
Match: STAD_RICCO (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Ricinus communis PE=1 SV=1)

HSP 1 Score: 340.502 bits (872), Expect = 7.656e-93
Identity = 166/243 (68.31%), Postives = 193/243 (79.42%), Query Frame = -3
Query:  162 DETGASSSPWAIWNRSWTAEENRHGDLLRSLWYSSGRVDMLMIEKTVQYLISAGMDPGTENNPYLGFVYTSFQERATFISHGNTARLSKEGGDPVLARICGTIASDEKRHENAYARIVEKLLEVDPTGAMIAIADLMNKKITMPAHLMYDGHDPRLFAHFAAVAQRLGVYTAHDYADILEFLIGRWXXXXXXXXXXXGRRAQEFVCGLAPRIRRLQELADQRAKKLKPPLVKFSWIFNRELSL 890
            DETGAS + WAIW R+WTAEENRHGDLL    Y SGRVDM  IEKT+QYLI +GMDP TEN+PYLGF+YTSFQERATFISHGNTAR +KE GD  LA+ICGTIA+DEKRHE AY +IVEKL E+DP G ++A AD+M KKI+MPAHLMYDG D  LF HF+AVAQRLGVYTA DYADILEFL+GRW           G++AQ++VC L PRIRRL+E A  RAK  + P + FSWIF+R++ L
Sbjct:  156 DETGASPTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDPRTENSPYLGFIYTSFQERATFISHGNTARQAKEHGDIKLAQICGTIAADEKRHETAYTKIVEKLFEIDPDGTVLAFADMMRKKISMPAHLMYDGRDDNLFDHFSAVAQRLGVYTAKDYADILEFLVGRWKVDKLTGLSAEGQKAQDYVCRLPPRIRRLEERAQGRAK--EAPTMPFSWIFDRQVKL 396          
BLAST of CX675688 vs. ExPASy Swiss-Prot
Match: STAD_CUCSA (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 339.732 bits (870), Expect = 1.306e-92
Identity = 163/243 (67.08%), Postives = 192/243 (79.01%), Query Frame = -3
Query:  162 DETGASSSPWAIWNRSWTAEENRHGDLLRSLWYSSGRVDMLMIEKTVQYLISAGMDPGTENNPYLGFVYTSFQERATFISHGNTARLSKEGGDPVLARICGTIASDEKRHENAYARIVEKLLEVDPTGAMIAIADLMNKKITMPAHLMYDGHDPRLFAHFAAVAQRLGVYTAHDYADILEFLIGRWXXXXXXXXXXXGRRAQEFVCGLAPRIRRLQELADQRAKKLKPPLVKFSWIFNRELSL 890
            DETGAS +PWAIW R+WTAEENRHGDLL    Y SGRVDM  +EKT+QYLI +GMDP TENNPYLGF+YTSFQERATFISHGNTARL+KE GD  LA+ICGTI +DEKRHE AY +IVEKL E+DP G +IA  ++M KK++MPAHLMYDG D  LF HF+AVAQRLGVYTA DYADILEFL+GRW           G++AQ++VC L  RIR+L+E A  RAK  + P + FSWIF+R++ L
Sbjct:  156 DETGASPTPWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQVEKTIQYLIGSGMDPRTENNPYLGFIYTSFQERATFISHGNTARLAKEHGDIKLAQICGTITADEKRHETAYTKIVEKLFEIDPEGTVIAFEEMMRKKVSMPAHLMYDGRDDNLFHHFSAVAQRLGVYTAKDYADILEFLVGRWKVESLTGLSGEGQKAQDYVCALPARIRKLEERAQGRAK--EGPTIPFSWIFDRQVKL 396          
BLAST of CX675688 vs. ExPASy Swiss-Prot
Match: STAD_SPIOL (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 339.347 bits (869), Expect = 1.706e-92
Identity = 164/243 (67.49%), Postives = 193/243 (79.42%), Query Frame = -3
Query:  162 DETGASSSPWAIWNRSWTAEENRHGDLLRSLWYSSGRVDMLMIEKTVQYLISAGMDPGTENNPYLGFVYTSFQERATFISHGNTARLSKEGGDPVLARICGTIASDEKRHENAYARIVEKLLEVDPTGAMIAIADLMNKKITMPAHLMYDGHDPRLFAHFAAVAQRLGVYTAHDYADILEFLIGRWXXXXXXXXXXXGRRAQEFVCGLAPRIRRLQELADQRAKKLKPPLVKFSWIFNRELSL 890
            DETGAS + WA+W R+WTAEENRHGDLL    Y SGRVDM  IEKT+QYLI +GMDP TENNPYLGFVYTSFQERATF+SHGN+ARL+KE GD  +A+ICG IASDEKRHE AY +IVEKL E+DP   ++A AD+M KKI+MPAHLMYDG D  LF HF+AVAQRLGVYTA DYADILEFL+GRW           G++AQ++VC L PRIRRL+E A +RAK  + P + FSWIF+R++ L
Sbjct:  159 DETGASPTSWAVWTRAWTAEENRHGDLLNKYLYLSGRVDMRSIEKTIQYLIGSGMDPRTENNPYLGFVYTSFQERATFVSHGNSARLAKEHGDLKMAQICGIIASDEKRHETAYTKIVEKLFEIDPDATVLAFADMMKKKISMPAHLMYDGRDDNLFDHFSAVAQRLGVYTAKDYADILEFLVGRWEVEKLTGLSSEGQKAQDYVCSLPPRIRRLEERARERAK--QAPSMPFSWIFDRQVKL 399          
BLAST of CX675688 vs. ExPASy Swiss-Prot
Match: STAD_ELAGV (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Elaeis guineensis var. tenera PE=2 SV=2)

HSP 1 Score: 336.65 bits (862), Expect = 1.106e-91
Identity = 165/243 (67.90%), Postives = 191/243 (78.60%), Query Frame = -3
Query:  162 DETGASSSPWAIWNRSWTAEENRHGDLLRSLWYSSGRVDMLMIEKTVQYLISAGMDPGTENNPYLGFVYTSFQERATFISHGNTARLSKEGGDPVLARICGTIASDEKRHENAYARIVEKLLEVDPTGAMIAIADLMNKKITMPAHLMYDGHDPRLFAHFAAVAQRLGVYTAHDYADILEFLIGRWXXXXXXXXXXXGRRAQEFVCGLAPRIRRLQELADQRAKKLKPPLVKFSWIFNRELSL 890
            DETGAS + WA+W R+WTAEENRHGDLL    Y SGRVDM  IEKT+QYLI +GMDP TEN+PYLGF+YTSFQERATFISHGNTAR +KE GD  LA+ICGTIASDEKRHE AY +IVEKL E+DP G +++ AD+M KKI+MPAHLMYDG D  LF HF+AVAQRLGV TA DYADILEFLI RW           G+RAQ+FVC LAPRIRR++E A +RAK  + P +  SWI+ RE+ L
Sbjct:  153 DETGASLTSWAVWTRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKTIQYLIGSGMDPRTENSPYLGFIYTSFQERATFISHGNTARHAKEHGDVKLAQICGTIASDEKRHETAYTKIVEKLFEIDPDGTVLSFADMMKKKISMPAHLMYDGQDDNLFEHFSAVAQRLGVDTAKDYADILEFLINRWKVGELTGFSGEGKRAQDFVCTLAPRIRRIEERAQERAK--QAPRIPCSWIYGREVQL 393          
The following BLAST results are available for this feature:
BLAST of CX675688 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
STAD_CARTI3.672e-9568.72Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_SOLCO5.302e-9467.90Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_OLEEU1.543e-9368.31Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_SOLTU4.489e-9368.72Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_BRANA5.862e-9369.14Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STADS_BRANA5.862e-9368.31Acyl-[acyl-carrier-protein] desaturase, seed speci... [more]
STAD_RICCO7.656e-9368.31Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_CUCSA1.306e-9267.08Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_SPIOL1.706e-9267.49Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_ELAGV1.106e-9167.90Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_64A08_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-64A08-A16-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675688 ID=CX675688; Name=CX675688; organism=Citrus sinensis; type=EST; length=892bp
TTTTTTTGAAAACTAGAATTTTCACCCCAAGATCTTAATTAAGTTTGATT
ACATTCTATATATGCTAAAAAGTACCACGATGTATGCATAACATTAGGGA
AATACATTGTAAAAGAAAAAAAAAAAAATTTTTTTTTGGGGTTTTTAATT
TTTAATTTTTACAGGCTGAGTTCCCTATTAAAAATCCAGCTAAACTTAAC
GAGAGGCGGCTTCAGCTTCTTGGCTCGCTGATCGGCTAACTCCTGCAGTC
GCCTAATCCTAGGCGCTAAGCCGCACACAAACTCTTGTGCACGTCTCCCT
TCACCCGTCAAGCCTTCCAGCTTTTCCAATCCCCACCGTCCAATCAAAAA
CTCTAAAATATCCGCATAGTCATGTGCCGTATACACGCCAAGCCGCTGAG
CCACTGCCGCAAAATGCGCAAACAGCCGTGGGTCATGCCCATCGTACATC
AGGTGAGCTGGCATTGTGATTTTCTTGTTCATCAGATCAGCAATTGCGAT
CATGGCACCCGTGGGATCCACTTCAAGGAGCTTTTCGACGATCCTAGCGT
AGGCGTTTTCGTGGCGCTTCTCGTCTGATGCAATGGTTCCACATATGCGC
GCGAGCACTGGATCACCTCCCTCTTTCGACAGGCGGGCCGTGTTGCCGTG
TGATATGAAAGTGGCGCGCTCTTGAAACGATGTGTAAACAAAGCCCAAAT
ACGGGTTGTTCTCTGTCCCAGGGTCCATGCCAGCACTGATAAGATACTGG
ACAGTCTTCTCAATCATGAGCATATCGACCCGACCCGACGAATACCAGAG
GCTCCTGAGCAAATCTCCATGGCGGTTTTCCTCAGCAGTCCAGGAGCGGT
TCCAAATAGCCCATGGGCTGGAACTTGCACCGGTCTCATCTC
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