CK939466

Overview
NameCK939466
Unique NameCK939466
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length648
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10990 contig Csv1_Contig10990:12..659. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK939466 vs. ExPASy Swiss-Prot
Match: KTAP2_HUMAN (Keratinocyte-associated protein 2 OS=Homo sapiens GN=KRTCAP2 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.268e-11
Identity = 40/119 (33.61%), Postives = 62/119 (52.10%), Query Frame = 3
Query:   63 GFSKAMAGSGSSMLYSFLMFIVILSLQQMYRGKLASTELFTILGGFISSLIFLVSLTFIGNFQET---SGMKTG-WGXXXXXXXXXXXXXSTVHRVCITTCFLFSAGLLYEVNKLSGMM 407
            G    + G+G+S+  S L+ +++ +  QMY  +LASTE  TI GG + S +F+ SLT   N +      G +   +                +HRVC+TTCF+FS   LY +NK+S  +
Sbjct:   23 GRGMMVVGTGTSLALSSLLSLLLFAGMQMYSRQLASTEWLTIQGGLLGSGLFVFSLTAFNNLENLVFGKGFQAKIFPEILLCLLLALFASGLIHRVCVTTCFIFSMVGLYYINKISSTL 141          
BLAST of CK939466 vs. ExPASy Swiss-Prot
Match: KTAP2_BOVIN (Keratinocyte-associated protein 2 OS=Bos taurus GN=KRTCAP2 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.574e-11
Identity = 39/114 (34.21%), Postives = 61/114 (53.51%), Query Frame = 3
Query:   78 MAGSGSSMLYSFLMFIVILSLQQMYRGKLASTELFTILGGFISSLIFLVSLTFIGNFQET---SGMKTG-WGXXXXXXXXXXXXXSTVHRVCITTCFLFSAGLLYEVNKLSGMM 407
            + G+G+S+  S L+ +++ +  QMY  +LASTE  TI GG + S +F+ SLT   N +      G +   +                +HRVC+TTCF+FS   LY +NK+S  +
Sbjct:    2 VVGTGTSLALSSLLSLLLFAGMQMYSRQLASTEWLTIQGGLLGSGLFVFSLTAFNNLENLVFGKGFQAKIFPEILLCLLLALFASGLIHRVCVTTCFIFSMVGLYYINKISSTL 115          
BLAST of CK939466 vs. ExPASy Swiss-Prot
Match: KTAP2_CANFA (Keratinocyte-associated protein 2 OS=Canis familiaris GN=KRTCAP2 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.280e-11
Identity = 39/112 (34.82%), Postives = 60/112 (53.57%), Query Frame = 3
Query:   84 GSGSSMLYSFLMFIVILSLQQMYRGKLASTELFTILGGFISSLIFLVSLTFIGNFQET---SGMKTG-WGXXXXXXXXXXXXXSTVHRVCITTCFLFSAGLLYEVNKLSGMM 407
            G+G+S+  S L+ +++ +  QMY  +LASTE  TI GG + S +F+ SLT   N +      G +   +                +HRVC+TTCF+FS   LY +NK+S  +
Sbjct:    4 GTGTSLALSSLLSLLLFAGMQMYSRQLASTEWLTIQGGLLGSGLFVFSLTAFNNLENLVFGKGFQAKIFPEILLCLLLALFASGLIHRVCVTTCFIFSMVGLYYINKISSTL 115          
The following BLAST results are available for this feature:
BLAST of CK939466 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
KTAP2_HUMAN4.268e-1133.61Keratinocyte-associated protein 2 OS=Homo sapiens ... [more]
KTAP2_BOVIN5.574e-1134.21Keratinocyte-associated protein 2 OS=Bos taurus GN... [more]
KTAP2_CANFA7.280e-1134.82Keratinocyte-associated protein 2 OS=Canis familia... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004750_C05 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IIF_C05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939466 ID=CK939466; Name=CK939466; organism=Citrus sinensis; type=EST; length=648bp
GGGAGTGACGCATCAGCGAAGGAGAGACGTATCAACTAACGAGATCGGAT
CGGAGGGGCTAGGGTTTTTCAAAGGCCATGGCTGGGTCTGGGAGTTCGAT
GCTCTATTCATTTCTTATGTTTATTGTCATCCTCTCTCTTCAACAAATGT
ATAGAGGGAAGCTGGCATCAACGGAGTTGTTTACGATTCTTGGAGGCTTC
ATCAGCTCACTCATATTCCTTGTGTCACTGACGTTCATTGGAAATTTTCA
GGAAACAAGTGGTATGAAGACTGGATGGGGTGCTGTTATAGTGGCGGAAC
TGATTGCTCTGATTGCTGCTAGCACTGTTCATCGAGTCTGCATTACAACA
TGTTTCTTGTTCTCAGCTGGACTGCTGTACGAGGTCAACAAGCTTTCAGG
GATGATGATTGCCAGAAGTGAATCCAAGACAAAAAGGCATTGATGATGCC
GGATAAATTACAAGAGGTTTTATCATCTTATCTTTGTATCCATAATCATT
TTTTAGTGTAGCGGATAACTATCAAAAACGAAAAATTACTGATACTTTAT
AGCTTGTCTGACAGTGATTGTCTGTTTGATACATTTTTGTGTCCAACATA
TTTACAATGCCTTTTATCGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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