CK939465

Overview
NameCK939465
Unique NameCK939465
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length813
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK939465_ssr33 microsatellite CK939465_ssr33:33..42. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig11186 contig Csv1_Contig11186:6..821. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK939465 vs. ExPASy Swiss-Prot
Match: ODO2_MYCTU (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Mycobacterium tuberculosis GN=sucB PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.864e-16
Identity = 37/70 (52.86%), Postives = 56/70 (80.00%), Query Frame = 1
Query:  412 VPFMGESITDGTLAKFLKQPGDRVEIDEPIAQIETDKVTIDVASPQAGVIQKLIAKEGETVEPGAKIAVI 621
            +P +GES+T+GT+ ++LKQ GD VE+DEP+ ++ TDKV  ++ SP AGV+ K+IA+E +TVE G ++AVI
Sbjct:    7 MPALGESVTEGTVTRWLKQEGDTVELDEPLVEVSTDKVDTEIPSPAAGVLTKIIAQEDDTVEVGGELAVI 76          

HSP 2 Score: 73.559 bits (179), Expect = 1.519e-12
Identity = 33/82 (40.24%), Postives = 55/82 (67.07%), Query Frame = 1
Query:  391 GDLVDAVVPFMGESITDGTLAKFLKQPGDRVEIDEPIAQIETDKVTIDVASPQAGVIQKLIAKEGETVEPGAKIAVISKSGE 636
            GD    ++P +GES+T+GT+ ++LK+ GD V++DEP+ ++ TDKV  ++ SP AGV+  + A E  TV  G ++A I  + +
Sbjct:  119 GDAKPVLMPELGESVTEGTVIRWLKKIGDSVQVDEPLVEVSTDKVDTEIPSPVAGVLVSISADEDATVPVGGELARIGVAAD 200          
BLAST of CK939465 vs. ExPASy Swiss-Prot
Match: ODO2_MYCBO (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Mycobacterium bovis GN=sucB PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.864e-16
Identity = 37/70 (52.86%), Postives = 56/70 (80.00%), Query Frame = 1
Query:  412 VPFMGESITDGTLAKFLKQPGDRVEIDEPIAQIETDKVTIDVASPQAGVIQKLIAKEGETVEPGAKIAVI 621
            +P +GES+T+GT+ ++LKQ GD VE+DEP+ ++ TDKV  ++ SP AGV+ K+IA+E +TVE G ++AVI
Sbjct:    7 MPALGESVTEGTVTRWLKQEGDTVELDEPLVEVSTDKVDTEIPSPAAGVLTKIIAQEDDTVEVGGELAVI 76          

HSP 2 Score: 73.559 bits (179), Expect = 1.519e-12
Identity = 33/82 (40.24%), Postives = 55/82 (67.07%), Query Frame = 1
Query:  391 GDLVDAVVPFMGESITDGTLAKFLKQPGDRVEIDEPIAQIETDKVTIDVASPQAGVIQKLIAKEGETVEPGAKIAVISKSGE 636
            GD    ++P +GES+T+GT+ ++LK+ GD V++DEP+ ++ TDKV  ++ SP AGV+  + A E  TV  G ++A I  + +
Sbjct:  119 GDAKPVLMPELGESVTEGTVIRWLKKIGDSVQVDEPLVEVSTDKVDTEIPSPVAGVLVSISADEDATVPVGGELARIGVAAD 200          
BLAST of CK939465 vs. ExPASy Swiss-Prot
Match: ODO2_STAS1 (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=odhB PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.918e-15
Identity = 42/76 (55.26%), Postives = 58/76 (76.32%), Query Frame = 1
Query:  412 VPFMGESITDGTLAKFLKQPGDRVEIDEPIAQIETDKVTIDVASPQAGVIQKLIAKEGETVEPGAKIAVISKSGEG 639
            VP + ESIT+GT+A++LKQ GD V+  E I ++ETDKV ++V S +AGV+Q+L+A EG+TVE G  IAV+   GEG
Sbjct:    6 VPELAESITEGTIAEWLKQVGDSVDKGEAIVELETDKVNVEVVSEEAGVLQELLANEGDTVEVGQAIAVV---GEG 78          
BLAST of CK939465 vs. ExPASy Swiss-Prot
Match: ODO2_BARVB (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Bartonella vinsonii subsp. berkhofii GN=sucB PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.616e-14
Identity = 36/77 (46.75%), Postives = 54/77 (70.13%), Query Frame = 1
Query:  412 VPFMGESITDGTLAKFLKQPGDRVEIDEPIAQIETDKVTIDVASPQAGVIQKLIAKEGETVEPGAKIAVISKSGEGV 642
            VP +GES+T+ T+ K+ K+ G+ V IDEP+ ++ETDKVT++V SP AG + ++IAKEG+TVE  A +  +      V
Sbjct:    7 VPTLGESVTEATVGKWFKKLGEAVAIDEPLVELETDKVTVEVPSPVAGKLFEIIAKEGDTVEVNALLGAVEAGAASV 83          
BLAST of CK939465 vs. ExPASy Swiss-Prot
Match: ODO2_STAAB (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=odhB PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.168e-14
Identity = 41/76 (53.95%), Postives = 55/76 (72.37%), Query Frame = 1
Query:  412 VPFMGESITDGTLAKFLKQPGDRVEIDEPIAQIETDKVTIDVASPQAGVIQKLIAKEGETVEPGAKIAVISKSGEG 639
            VP + ESIT+GT+A++LK  GD VE  E I ++ETDKV ++V S +AGV+ + +A EG+TVE G  IAVI   GEG
Sbjct:    6 VPELAESITEGTIAEWLKNVGDSVEKGEAILELETDKVNVEVVSEEAGVLSEQLASEGDTVEVGQAIAVI---GEG 78          
BLAST of CK939465 vs. ExPASy Swiss-Prot
Match: ODO2_STAES (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Staphylococcus epidermidis (strain ATCC 12228) GN=odhB PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.056e-14
Identity = 38/81 (46.91%), Postives = 58/81 (71.60%), Query Frame = 1
Query:  397 LVDAVVPFMGESITDGTLAKFLKQPGDRVEIDEPIAQIETDKVTIDVASPQAGVIQKLIAKEGETVEPGAKIAVISKSGEG 639
            + +  VP + ESIT+GT+A++LK  GD V+  E I ++ETDKV ++V S +AGV+ + +A+EG+TVE G  +AV+   GEG
Sbjct:    1 MAEVKVPELAESITEGTIAEWLKNVGDNVDKGEAILELETDKVNVEVVSEEAGVLSEQLAEEGDTVEVGQAVAVV---GEG 78          
BLAST of CK939465 vs. ExPASy Swiss-Prot
Match: ODO2_STAEQ (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=odhB PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.056e-14
Identity = 38/81 (46.91%), Postives = 58/81 (71.60%), Query Frame = 1
Query:  397 LVDAVVPFMGESITDGTLAKFLKQPGDRVEIDEPIAQIETDKVTIDVASPQAGVIQKLIAKEGETVEPGAKIAVISKSGEG 639
            + +  VP + ESIT+GT+A++LK  GD V+  E I ++ETDKV ++V S +AGV+ + +A+EG+TVE G  +AV+   GEG
Sbjct:    1 MAEVKVPELAESITEGTIAEWLKNVGDNVDKGEAILELETDKVNVEVVSEEAGVLSEQLAEEGDTVEVGQAVAVV---GEG 78          
BLAST of CK939465 vs. ExPASy Swiss-Prot
Match: ODO2_STAAW (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Staphylococcus aureus (strain MW2) GN=odhB PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.056e-14
Identity = 40/76 (52.63%), Postives = 55/76 (72.37%), Query Frame = 1
Query:  412 VPFMGESITDGTLAKFLKQPGDRVEIDEPIAQIETDKVTIDVASPQAGVIQKLIAKEGETVEPGAKIAVISKSGEG 639
            VP + ESIT+GT+A++LK  GD VE  E I ++ETDKV ++V S +AGV+ + +A EG+TVE G  IA+I   GEG
Sbjct:    6 VPELAESITEGTIAEWLKNVGDSVEKGEAILELETDKVNVEVVSEEAGVLSEQLASEGDTVEVGQAIAII---GEG 78          
BLAST of CK939465 vs. ExPASy Swiss-Prot
Match: ODO2_STAAS (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Staphylococcus aureus (strain MSSA476) GN=odhB PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.056e-14
Identity = 40/76 (52.63%), Postives = 55/76 (72.37%), Query Frame = 1
Query:  412 VPFMGESITDGTLAKFLKQPGDRVEIDEPIAQIETDKVTIDVASPQAGVIQKLIAKEGETVEPGAKIAVISKSGEG 639
            VP + ESIT+GT+A++LK  GD VE  E I ++ETDKV ++V S +AGV+ + +A EG+TVE G  IA+I   GEG
Sbjct:    6 VPELAESITEGTIAEWLKNVGDSVEKGEAILELETDKVNVEVVSEEAGVLSEQLASEGDTVEVGQAIAII---GEG 78          
BLAST of CK939465 vs. ExPASy Swiss-Prot
Match: ODO2_STAAR (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Staphylococcus aureus (strain MRSA252) GN=odhB PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.056e-14
Identity = 41/76 (53.95%), Postives = 55/76 (72.37%), Query Frame = 1
Query:  412 VPFMGESITDGTLAKFLKQPGDRVEIDEPIAQIETDKVTIDVASPQAGVIQKLIAKEGETVEPGAKIAVISKSGEG 639
            VP + ESIT+GT+A++LK  GD VE  E I ++ETDKV ++V S +AGV+ + +A EG+TVE G  IAVI   GEG
Sbjct:    6 VPELAESITEGTIAEWLKNLGDSVEKGEAILELETDKVNVEVVSEEAGVLSEQLASEGDTVEVGQAIAVI---GEG 78          
The following BLAST results are available for this feature:
BLAST of CK939465 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
ODO2_MYCTU3.864e-1652.86Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_MYCBO3.864e-1652.86Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_STAS11.918e-1555.26Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_BARVB3.616e-1446.75Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_STAAB6.168e-1453.95Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_STAES8.056e-1446.91Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_STAEQ8.056e-1446.91Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_STAAW8.056e-1452.63Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_STAAS8.056e-1452.63Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_STAAR8.056e-1453.95Dihydrolipoyllysine-residue succinyltransferase co... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004750_C04 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IIF_C04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939465 ID=CK939465; Name=CK939465; organism=Citrus sinensis; type=EST; length=813bp
GGGGACGAGAAAGTTCTGTACATCGCAAGTCGTCTCTCTCTCTGAGTCTT
GTAAAATTTGATCTCAGATTCATTTTTATTCATTCACATCTAAAAAGAAA
AATAAATAAAGCACATAGTTTTTTCGGAAATGATTTGGGGAATTGTTCGC
CGCAAAATCACTTCGGCTCAAGTGATTGGACAATCAGTGTCAAAGATTGG
GCCAAGATGTCACGCGACTGCGCAAAAGGAGGCTATACTCACTTGCAGAG
GTTTTCAGCGTGTTCAGCGTTCTAGCTATCACATTTTGTCAGGGAATTAT
GTTTGTTCGACGCCAAGAAGCGAAGTAATTGAGCTGATACAGAAAGGATC
TTTTATTGGATCGAGAAGTAGATTGTTTTCTTCAGATAGTGGAGACCTGG
TTGATGCTGTTGTTCCCTTCATGGGTGAATCCATTACTGATGGAACATTG
GCGAAGTTTTTGAAGCAACCCGGAGATAGAGTTGAAATTGATGAGCCCAT
TGCTCAAATTGAAACCGATAAGGTGACAATTGATGTGGCTAGTCCTCAAG
CCGGTGTTATCCAAAAGCTTATAGCCAAGGAAGGTGAAACTGTGGAACCA
GGTGCAAAGATTGCTGTTATTTCAAAATCAGGTGAAGGTGTTGCTCAAGC
TGCTCCAGCAGAGAAAGCTGCTGCTCAGCCTCCACCTGCTGAAGAAAAGC
CAAGTGTTGAGAAGCAAACTCCTGAGTCGGAAGCTGCCCCTGCTGTAAAA
GATAAAACACCCTCTGAACCACCTCCTACAGCCAAAAAACCTACTTCACC
TTCAAAACCCATG
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