CX675687

Overview
NameCX675687
Unique NameCX675687
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX675687_ssr582 microsatellite CX675687_ssr582:582..608. BLAST: Citrus ESTs to Prunus persica proteins V1
CX675687_ssr695 microsatellite CX675687_ssr695:695..706. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6476 contig Csv1_Contig6476:1..707. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX675687 vs. ExPASy Swiss-Prot
Match: RK35_SPIOL (50S ribosomal protein L35, chloroplastic OS=Spinacia oleracea GN=RPL35 PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.033e-32
Identity = 72/100 (72.00%), Postives = 84/100 (84.00%), Query Frame = -2 
Query:  188 PLLFRHNNFPT---TVTQNRPQTVTVFAAKGYKMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMHEVSRSDYDNVIGCLPYLKVNRQ 478
            P++ ++    T   +V+ + P + TVFAAKGYKMKTHKASAKRFRVTGKGKI+RRRAGKQHLLAKKNTKRK RLSK+ +V RSDYDNVIG LPYLKVNR+
Sbjct:   60 PIVLKNKRISTVDSSVSTSSP-SFTVFAAKGYKMKTHKASAKRFRVTGKGKIVRRRAGKQHLLAKKNTKRKNRLSKLIQVDRSDYDNVIGALPYLKVNRK 158
[Close]
BLAST of CX675687 vs. ExPASy Swiss-Prot
Match: RL35_ANAVT (50S ribosomal protein L35 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rpmI PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.730e-11
Identity = 36/63 (57.14%), Postives = 44/63 (69.84%), Query Frame = -2 
Query:  203 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMHEVSRSDYDNVIGCLPYL 391
            K+KT KA+AKRFR TG GKI+RR+A K HLL  K T +K + SKM  V+  D +NV   LPYL
Sbjct:    3 KLKTRKAAAKRFRATGTGKIVRRKAFKNHLLEHKTTNKKRQFSKMAIVNERDEENVRLMLPYL 65
[Close]
BLAST of CX675687 vs. ExPASy Swiss-Prot
Match: RL35_ANASP (50S ribosomal protein L35 OS=Anabaena sp. (strain PCC 7120) GN=rpmI PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.730e-11
Identity = 36/63 (57.14%), Postives = 44/63 (69.84%), Query Frame = -2 
Query:  203 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMHEVSRSDYDNVIGCLPYL 391
            K+KT KA+AKRFR TG GKI+RR+A K HLL  K T +K + SKM  V+  D +NV   LPYL
Sbjct:    3 KLKTRKAAAKRFRATGTGKIVRRKAFKNHLLEHKTTNKKRQFSKMAIVNERDEENVRLMLPYL 65
The following BLAST results are available for this feature:
BLAST of CX675687 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RK35_SPIOL3.033e-3272.0050S ribosomal protein L35, chloroplastic OS=Spinac... [more]
RL35_ANAVT1.730e-1157.1450S ribosomal protein L35 OS=Anabaena variabilis (... [more]
RL35_ANASP1.730e-1157.1450S ribosomal protein L35 OS=Anabaena sp. (strain ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_64A07_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-64A07-A14-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675687 ID=CX675687; Name=CX675687; organism=Citrus sinensis; type=EST; length=707bp
GTGAACTTTGCTTGATTTTGAGCTTTGTGGTGGAAACATCAGCAAAAATA
AGAGCCAAAATGATCAATTAGGGTAAATAAAACAATTGCTAGCACTTCGT
TGTTTGCTGACAACAAAATGTGAGAAATTCAGGCGAACGGAAATTACATA
GGTCTTCTGCAAACTGTGAAAATCACTTCTACTTTGCTTGCCTGTTAACC
TTCAGATATGGCAAGCAACCTATAACATTGTCGTAGTCACTTCGGCTAAC
CTCGTGCATTTTAGAGAGGCGTAATTTTCTCTTAGTGTTTTTCTTAGCTA
ATAAATGCTGCTTTCCAGCTCTCCTCCTCAATATTTTTCCTTTACCAGTC
ACCCTAAACCTCTTCGCGGATGCCTTGTGGGTTTTCATTTTGTAACCTTT
TGCGGCAAAAACAGTGACCGTTTGAGGCCTATTTTGAGTAACTGTTGTGG
GGAAGTTGTTATGACGGAAGAGTAAAGGAGAGGCGGAAATGCTGTAGCTT
GAATTGAGTCTGAGCGAGTTGTTAAGCTTGTTGGATAGAGCCAGTTGGAG
TGATGAGCCACGAGAGGCTCTCACTGAAGATGAAGAAGAAGAAGAAGAAG
AAGAAGAAGGGCATAGTGGGCAAAATTTTAAATTGAAAGATATCATCGAA
GCCATGTTTTCTTTCGTTTCGTTTTATCTTCTGCCAAGGATATTGAAGAA
GAAGAAG
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