CX675686

Overview
NameCX675686
Unique NameCX675686
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length711
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX675686_ssr1 microsatellite CX675686_ssr1:1..12. BLAST: Citrus ESTs to Prunus persica proteins V1
CX675686_ssr100 microsatellite CX675686_ssr100:100..126. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of CX675686 vs. ExPASy Swiss-Prot
Match: RK35_SPIOL (50S ribosomal protein L35, chloroplastic OS=Spinacia oleracea GN=RPL35 PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.058e-32
Identity = 72/100 (72.00%), Postives = 84/100 (84.00%), Query Frame = 3 
Query:  231 PLLFRHNNFPT---TVTQNRPQTVTVFAAKGYKMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMHEVSRSDYDNVIGCLPYLKVNRQ 521
            P++ ++    T   +V+ + P + TVFAAKGYKMKTHKASAKRFRVTGKGKI+RRRAGKQHLLAKKNTKRK RLSK+ +V RSDYDNVIG LPYLKVNR+
Sbjct:   60 PIVLKNKRISTVDSSVSTSSP-SFTVFAAKGYKMKTHKASAKRFRVTGKGKIVRRRAGKQHLLAKKNTKRKNRLSKLIQVDRSDYDNVIGALPYLKVNRK 158
[Close]
BLAST of CX675686 vs. ExPASy Swiss-Prot
Match: RL35_ANAVT (50S ribosomal protein L35 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rpmI PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.744e-11
Identity = 36/63 (57.14%), Postives = 44/63 (69.84%), Query Frame = 3 
Query:  318 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMHEVSRSDYDNVIGCLPYL 506
            K+KT KA+AKRFR TG GKI+RR+A K HLL  K T +K + SKM  V+  D +NV   LPYL
Sbjct:    3 KLKTRKAAAKRFRATGTGKIVRRKAFKNHLLEHKTTNKKRQFSKMAIVNERDEENVRLMLPYL 65
[Close]
BLAST of CX675686 vs. ExPASy Swiss-Prot
Match: RL35_ANASP (50S ribosomal protein L35 OS=Anabaena sp. (strain PCC 7120) GN=rpmI PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.744e-11
Identity = 36/63 (57.14%), Postives = 44/63 (69.84%), Query Frame = 3 
Query:  318 KMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTKRKLRLSKMHEVSRSDYDNVIGCLPYL 506
            K+KT KA+AKRFR TG GKI+RR+A K HLL  K T +K + SKM  V+  D +NV   LPYL
Sbjct:    3 KLKTRKAAAKRFRATGTGKIVRRKAFKNHLLEHKTTNKKRQFSKMAIVNERDEENVRLMLPYL 65
The following BLAST results are available for this feature:
BLAST of CX675686 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RK35_SPIOL3.058e-3272.0050S ribosomal protein L35, chloroplastic OS=Spinac... [more]
RL35_ANAVT1.744e-1157.1450S ribosomal protein L35 OS=Anabaena variabilis (... [more]
RL35_ANASP1.744e-1157.1450S ribosomal protein L35 OS=Anabaena sp. (strain ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_64A07_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-64A07-A14-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675686 ID=CX675686; Name=CX675686; organism=Citrus sinensis; type=EST; length=711bp
TCTTCTTCTTCTTCAATATCCTTGGCAGAAGATAAAACGAAACGAAAGAA
AACATGGCTTCGATGATATCTTTCAATTTAAAATTTTGCCCACTATGCCC
TTCTTCTTCTTCTTCTTCTTCTTCTTCATCTTCAGTGAGAGCCTCTCGTG
GCTCATCACTCCAACTGGCTCTATCCAACAAGCTTAACAACTCGCTCAGA
CTCAATTCAAGCTACAGCATTTCCGCCTCTCCTTTACTCTTCCGTCATAA
CAACTTCCCCACAACAGTTACTCAAAATAGGCCTCAAACGGTCACTGTTT
TTGCCGCAAAAGGTTACAAAATGAAAACCCACAAGGCATCCGCGAAGAGG
TTTAGGGTGACTGGTAAAGGAAAAATATTGAGGAGGAGAGCTGGAAAGCA
GCATTTATTAGCTAAGAAAAACACTAAGAGAAAATTACGCCTCTCTAAAA
TGCACGAGGTTAGCCGAAGTGACTACGACAATGTTATAGGTTGCTTGCCA
TATCTGAAGGTTAACAGGCAAGCAAAGTAGAAGTGATTTTCACAGTTTGC
AGAAGACCTATGTAATTTCCGTTCGCCTGAATTTCTCACATTTTGTTGTC
AGCAAACAACGAAGTGCTAGCAATTGTTTTATTTACCCTAATTGATCATT
TTGGCTCTTATTTTTGCTGATGTTTCCACCACAAAGCTCAAAATCAAGCA
AAGTTCACCCT
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