CK939456

Overview
NameCK939456
Unique NameCK939456
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length888
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7102 contig Csv1_Contig7102:123..1010. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK939456 vs. ExPASy Swiss-Prot
Match: CHID_SOLLC (Basic endochitinase (Fragment) OS=Solanum lycopersicum GN=CHI14 PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 3.853e-44
Identity = 90/221 (40.72%), Postives = 122/221 (55.20%), Query Frame = 1
Query:  223 NETISDYFQVYQFENFFSKRNTPVAHAVGFWDYRSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDXMNN 885
            ++ IS       FE     RN     A GF+ Y +FITAT  +    FGTTG    + KEI AFLA    +T+ G+  A  GP +WG CYN E      YC  S ++  PC PG +Y+GRG I I +NYNYGA G A+  +LLN+P+ +  +A ++F+ A+W WMT  ++ +PSAHD   G W P+  D+   R P FG   NI+ G   C  G    M+N
Sbjct:    2 SQNISSLISKNLFERILVHRNDRACGAKGFYTYEAFITATKTFA--AFGTTGDTNTRNKEIAAFLAQTSHETTGGWATAPDGPYSWGYCYNREQGSPGDYCASSQQW--PCAPGKKYFGRGPIQISYNYNYGAAGSAIGVNLLNNPDLVANDAVVSFKTALWFWMT-AQQPKPSAHDVITGRWSPSVADSAPGRVPGFGVITNIINGGMECNSGSNALMDN 217          
BLAST of CK939456 vs. ExPASy Swiss-Prot
Match: CHI2_BRANA (Endochitinase CH25 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 5.032e-44
Identity = 84/203 (41.38%), Postives = 117/203 (57.64%), Query Frame = 1
Query:  256 QFENFFSKRNTPVAHAVGFWDYRSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQG 864
            QF++    RN     A GF+ Y +FI A   +   GFGTTG    + KEI AF      +T+ G+  A  GP +WG C+  E +PS +YC  S ++  PC  G  YYGRG + + WNYNYG  G A+ +DLLN+P+ +  +  +AF+AAIW WMTP +  +PS H   VG W+P+  D  + R P +G   NI+ G   CG+G
Sbjct:   79 QFDDMLKHRNDNACPARGFYTYDAFINAAKSFP--GFGTTGDTATRKKEIAAFFGQTSHETTGGWATAPDGPYSWGYCFKQEQNPSSNYCSPSAEW--PCASGKSYYGRGPMQLSWNYNYGQCGRAIGSDLLNNPDLVSNDPVIAFKAAIWFWMTP-QSPKPSCHAVIVGQWQPSDADRAAGRVPGYGVITNIINGGLECGRG 276          
BLAST of CK939456 vs. ExPASy Swiss-Prot
Match: CHIB_ARATH (Basic endochitinase B OS=Arabidopsis thaliana GN=CHI-B PE=1 SV=3)

HSP 1 Score: 177.948 bits (450), Expect = 6.572e-44
Identity = 83/203 (40.89%), Postives = 116/203 (57.14%), Query Frame = 1
Query:  256 QFENFFSKRNTPVAHAVGFWDYRSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQG 864
            QF++    RN     A GF+ Y +FITA   +   GFGTTG    + KE+ AF      +T+ G+  A  GP +WG C+  E +P+  YC+ S   T+PC  G  YYGRG + + WNYNYG  G A+  DLLN+P+ +  +A +AF+AAIW WMT  +  +PS H    G W+P+  D  + R P +G   NI+ G   CG+G
Sbjct:   94 QFDDMLKHRNDAACPARGFYTYNAFITAAKSFP--GFGTTGDTATRKKEVAAFFGQTSHETTGGWATAPDGPYSWGYCFKQEQNPASDYCEPSA--TWPCASGKRYYGRGPMQLSWNYNYGLCGRAIGVDLLNNPDLVANDAVIAFKAAIWFWMT-AQPPKPSCHAVIAGQWQPSDADRAAGRLPGYGVITNIINGGLECGRG 291          
BLAST of CK939456 vs. ExPASy Swiss-Prot
Match: CHIT_CARPA (Endochitinase OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.121e-43
Identity = 83/202 (41.09%), Postives = 118/202 (58.42%), Query Frame = 1
Query:  259 FENFFSKRNTPVAHAVGFWDYRSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQG 864
            F+     RN P   A GF+ Y +F+ A   +    FGTTG+   + +E+ AFL     +T+ G+  A  GP AWG C+  E +PS +YC  S +Y  PC PG  YYGRG + + WNYNYG  GEAL+ +LL +P+ +  +  L+F+ A+W WMTP +  +PS HD   G W+P+  DT + R P +G   N+L G   CG+G
Sbjct:   11 FDQMLKHRNNPACPAKGFYTYDAFLAAAKSFP--SFGTTGSTDVRKRELAAFLGQTSHETTGGWPSAPDGPYAWGYCFLKERNPSSNYCAPSPRY--PCAPGKSYYGRGPLQLSWNYNYGPCGEALRVNLLGNPDLVATDRVLSFKTALWFWMTP-QAPKPSCHDVLTGRWQPSAADTAAGRLPGYGVLTNLLNGGLECGKG 207          
BLAST of CK939456 vs. ExPASy Swiss-Prot
Match: CHI1_GOSHI (Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.619e-42
Identity = 83/203 (40.89%), Postives = 116/203 (57.14%), Query Frame = 1
Query:  259 FENFFSKRNTPVAHAVGFWDYRSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYG-VATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQG 864
            F      RN     A GF+ Y +FI A   +    F TTG +  + +EI AFLA    +T+ G G  A  GP AWG CYN E++P  SYC     Y  PC PG +Y+GRG + + WNYNYG  G A+  DLLN+P+ +  + T++F++A W WMTP +  +PS H+  +G W P+ +D  + R P +G   NI+ G   CG+G
Sbjct:   83 FNQMLLHRNDGACPARGFYTYDAFIAAARSFP--AFATTGDQATRKREIAAFLAQTSHETTGGAGWAAPDGPYAWGYCYNRELNPPSSYCASDPNY--PCAPGKQYFGRGPMQLSWNYNYGQCGRAIGVDLLNNPDLLSSDPTISFKSAFWFWMTP-QSPKPSCHNVIIGAWSPSSSDRAAGRVPGYGVITNIINGGLECGKG 280          
BLAST of CK939456 vs. ExPASy Swiss-Prot
Match: CHI2_GOSHI (Endochitinase 2 (Fragment) OS=Gossypium hirsutum PE=2 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 6.152e-42
Identity = 82/203 (40.39%), Postives = 115/203 (56.65%), Query Frame = 1
Query:  259 FENFFSKRNTPVAHAVGFWDYRSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYG-VATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQG 864
            F      RN     A GF+ Y +FI A   +    F TTG +  + +EI AFLA    +T+ G G  A  GP AWG CYN E++P  SYC     Y  PC PG +Y+GRG + + WNYNYG  G A+  DLLN+P+ +  + T++F++A W WMTP +  +PS H+  +G W P+ +D  + R   +G   NI+ G   CG+G
Sbjct:   61 FNQMLLHRNDGACPARGFYTYDAFIAAARSFP--AFATTGDQATRKREIAAFLAQTSHETTGGAGWAAPDGPYAWGYCYNRELNPPSSYCASDPNY--PCAPGKQYFGRGPMQLSWNYNYGQCGRAIGVDLLNNPDLLSSDPTISFKSAFWFWMTP-QSPKPSCHNVIIGAWSPSSSDRAAGRATGYGVITNIINGGLECGKG 258          
BLAST of CK939456 vs. ExPASy Swiss-Prot
Match: CHIX_PEA (Endochitinase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 8.034e-42
Identity = 83/202 (41.09%), Postives = 115/202 (56.93%), Query Frame = 1
Query:  259 FENFFSKRNTPVAHAVGFWDYRSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQG 864
            F+     RN       GF+ Y +FI A   +   GFGTTG    K KE+ AFLA    +T+ G+  A  GP AWG C+  E +  + YC       +PC PG +YYGRG I +  NYNYG  G+A+K DL+N+P+ +  N T++F+ AIW WMTP + ++PS+HD   G W P+  D+ + R P +G   NI+ G   CG G
Sbjct:   89 FDQMLKYRNDGRCAGHGFYTYDAFIAAARSFN--GFGTTGDDNTKKKELAAFLAQTSHETTGGWPTAPDGPYAWGYCFVSEQNTQEVYCSPK---DWPCAPGKKYYGRGPIQLTHNYNYGLAGQAIKEDLINNPDLLSTNPTVSFKTAIWFWMTP-QANKPSSHDVITGRWTPSAADSSAGRVPGYGVITNIINGGIECGHG 284          
BLAST of CK939456 vs. ExPASy Swiss-Prot
Match: CHI1_THECC (Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 2.338e-41
Identity = 83/204 (40.69%), Postives = 117/204 (57.35%), Query Frame = 1
Query:  256 QFENFFSKRNTPVAHAVGFWDYRSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYG-VATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQG 864
            +F+     RN     A GF+ Y +FI A   +    F TTG    + +E+ AFLA    +T+ G G  A  GP  WG CYN E++P+  YC   +   YPC PG +Y+GRG + + WNYNYG  G A+  DLLN+P+ +  + T++F++A W WMTP +  +PS HD  +G W P+ +D  + R P FG   NI+ G   CGQG
Sbjct:   80 RFDQMLLHRNDGGCPARGFYTYDAFIAAAKSFP--AFATTGDDATRKREVAAFLAQTSHETTGGAGWAAPDGPYTWGYCYNRELNPAD-YCQ--WDPNYPCAPGKQYFGRGPMQLTWNYNYGQCGRAIGVDLLNNPDLLATDPTISFKSAFWFWMTP-QSPKPSCHDVIIGAWSPSGSDQAAGRVPGFGLITNIINGGLECGQG 277          
BLAST of CK939456 vs. ExPASy Swiss-Prot
Match: CHIT_PHAVU (Endochitinase OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 3.053e-41
Identity = 81/202 (40.10%), Postives = 115/202 (56.93%), Query Frame = 1
Query:  259 FENFFSKRNTPVAHAVGFWDYRSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQG 864
            F+     RN     A GF+ Y +FI A   Y    FG TG    + +EI AFL     +T+ G+  A  GP AWG C+  E +PS +YC  + ++  PC PG +YYGRG I I WNYNYG  G A+  DLLN P+ +  ++ ++F++A+W WMT  +  +PS+HD     W P+  D  ++R P +GT  NI+ G   CG+G
Sbjct:   85 FDQMLKHRNDGACPAKGFYTYDAFIAAAKAYP--SFGNTGDTATRKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRERNPS-TYCSATPQF--PCAPGQQYYGRGPIQISWNYNYGQCGRAIGVDLLNKPDLVATDSVISFKSALWFWMT-AQSPKPSSHDVITSRWTPSSADVAARRLPGYGTVTNIINGGLECGRG 280          
BLAST of CK939456 vs. ExPASy Swiss-Prot
Match: CHI2_ORYSJ (Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht2 PE=1 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 3.053e-41
Identity = 79/209 (37.80%), Postives = 117/209 (55.98%), Query Frame = 1
Query:  259 FENFFSKRNTPVAHAVGFWDYRSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLLNHPEYIEQNATLAFEAAIWKWMTPVKKSQPSAHDAFVGNWKPTKNDTLSKRGPNFGTTMNILYGESVCGQGDIDXMNN 885
            FE     RN     A GF+ Y +F+ A   +    FG TG    + +E+ AFL     +T+ G+  A  GP +WG C+  E +P   YC  S ++  PC PG +YYGRG I + +N+NYG  G A+  DLL++P+ +  +AT++F+ A+W WMTP + ++PS+HD   G W P+  D  + R P +G   NI+ G   CG G  D + N
Sbjct:   98 FERLLLHRNDGACPARGFYTYEAFLAAAAAFP--AFGGTGNTETRKREVAAFLGQTSHETTGGWPTAPDGPFSWGYCFKQEQNPPSDYCQPSPEW--PCAPGRKYYGRGPIQLSFNFNYGPAGRAIGVDLLSNPDLVATDATVSFKTALWFWMTP-QGNKPSSHDVITGRWAPSPADAAAGRAPGYGVITNIVNGGLECGHGPDDRVAN 301          
The following BLAST results are available for this feature:
BLAST of CK939456 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHID_SOLLC3.853e-4440.72Basic endochitinase (Fragment) OS=Solanum lycopers... [more]
CHI2_BRANA5.032e-4441.38Endochitinase CH25 OS=Brassica napus PE=2 SV=1[more]
CHIB_ARATH6.572e-4440.89Basic endochitinase B OS=Arabidopsis thaliana GN=C... [more]
CHIT_CARPA1.121e-4341.09Endochitinase OS=Carica papaya PE=1 SV=1[more]
CHI1_GOSHI1.619e-4240.89Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1[more]
CHI2_GOSHI6.152e-4240.39Endochitinase 2 (Fragment) OS=Gossypium hirsutum P... [more]
CHIX_PEA8.034e-4241.09Endochitinase OS=Pisum sativum PE=2 SV=1[more]
CHI1_THECC2.338e-4140.69Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 S... [more]
CHIT_PHAVU3.053e-4140.10Endochitinase OS=Phaseolus vulgaris PE=1 SV=1[more]
CHI2_ORYSJ3.053e-4137.80Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004750_C12 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IIF_C12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939456 ID=CK939456; Name=CK939456; organism=Citrus sinensis; type=EST; length=888bp
GGGGAAGTGAATCTCGAAACAACAGGTAGATCTGGTGAGAACGAGAAAAT
GAAGATGAAGAATGGCAGTGTGGCAATGACACTGACAGTGGCACTAGTAC
TGGCACTGGCAGTGAGTTTGGCAAATGGAGATGAATCAGAGAAGGTGATA
GTGAAGAAGTTGAAGGGGAAAAAAGTTTGCATAAAAGGGTGGGAGTGCCC
AACATGGTCGAAATTCTGCTGTAACGAGACGATATCAGACTATTTCCAGG
TTTACCAGTTTGAGAATTTCTTCTCGAAAAGGAACACGCCGGTGGCACAT
GCCGTGGGATTCTGGGATTATCGGTCTTTCATTACTGCCACCGTCAAATA
TCAGCCCCTCGGCTTCGGTACCACCGGTACTAAGCTTGATAAGATGAAGG
AGATTTGCGCTTTTCTTGCCCACGTGGGCTGCAAGACCTCTTGTGGATAT
GGAGTGGCCACTGGAGGACCATTGGCCTGGGGACTTTGCTACAACCATGA
AATGAGCCCCAGTCAGTCATATTGTGATGATTCCTACAAATACACATATC
CCTGCACCCCTGGAGCTGAGTACTATGGCCGAGGTGCTATACCTATATAC
TGGAACTATAACTATGGAGCCACTGGGGAAGCATTGAAGGCAGATCTGTT
GAATCATCCCGAATACATTGAGCAGAATGCTACCCTTGCCTTTGAGGCTG
CAATTTGGAAGTGGATGACCCCAGTCAAGAAATCCCAGCCTTCAGCCCAT
GATGCCTTTGTTGGCAACTGGAAGCCCACCAAGAATGATACTTTGTCCAA
ACGGGGACCTAACTTTGGTACCACAATGAATATCCTCTATGGTGAGAGCG
TATGCGGTCAGGGTGATATTGATGNNATGAACAACATT
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