CK939454

Overview
NameCK939454
Unique NameCK939454
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length721
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2222 contig Csv1_Contig2222:103..824. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CK939454 vs. ExPASy Swiss-Prot
Match: CP12_CHLRE (Calvin cycle protein CP12 OS=Chlamydomonas reinhardtii GN=cp12 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.653e-15
Identity = 39/74 (52.70%), Postives = 52/74 (70.27%), Query Frame = 1 
Query:  241 ISEKVEQSIKSAEEACEGDPASGECAAAWDEVEELSAAASHARERKKD----SDPLEAYCKDNPETDECRTYED 450
            +++KV+ ++K AE+AC     S +CA AWD VEELSAA SH ++  K     +DPLEA+CKD P+ DECR YED
Sbjct:    8 LNKKVQDAVKEAEDAC-AKGTSADCAVAWDTVEELSAAVSHKKDAVKADVTLTDPLEAFCKDAPDADECRVYED 80
The following BLAST results are available for this feature:
BLAST of CK939454 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
CP12_CHLRE2.653e-1552.70Calvin cycle protein CP12 OS=Chlamydomonas reinhar... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004750_C10 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IIF_C10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939454 ID=CK939454; Name=CK939454; organism=Citrus sinensis; type=EST; length=721bp
GGGGATAGACCGTATTACCAAAGCCAAAACAACAAAATAGAAGAAGAGCA
AGAGGCGAGAATGGCAACAATAGCCGGTGTCAATCTCTCAACTCCCAGCG
TCTTTGCCAAAATCACAGACCCGAAGTCAAAGGTTCAACCCAGCAGGTCT
CTGTGGCTCAACAACCCATCAAGGAAAAGGCCCGCTCAGTTTAGAACAGG
GCGCATGCACATGCAACCCCTGAGAGCTGCTCCCGATAGAATCTCAGAGA
AGGTGGAGCAAAGCATCAAGAGTGCAGAGGAGGCGTGCGAGGGGGACCCT
GCTAGTGGCGAGTGTGCTGCTGCATGGGACGAGGTGGAGGAGCTGAGTGC
CGCGGCCAGCCATGCTAGAGAGAGGAAGAAGGATTCCGATCCTTTGGAGG
CTTACTGTAAGGACAACCCAGAGACCGATGAGTGCCGCACTTATGAAGAT
TGATAACATCGTCGTTATGCTCTTTTAATTATGTTTTTTTTTCTCCTTTT
TAAGTCCTTGGATGTTGTTATGTGATGGGATCGTGATGTTTTGGTCACCT
TGATATTCATATACTACAATACCATATGGAGACTTGAATGATAAATAGTT
CCTCTGATTTTTAGCGGTTATGTTTCAATCGCATCTTTTATGTTATGTTT
GTAGTAACTTGTTTATATGATGATGAAACATTTATAAATTTCAAAAAAAA
AAAAAAAAAAAAAAAAAAAAA
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