CK939437

Overview
NameCK939437
Unique NameCK939437
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length563
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK939437_ssr6 microsatellite CK939437_ssr6:6..20. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2614 contig Csv1_Contig2614:124..685. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK939437 vs. ExPASy Swiss-Prot
Match: MT3_CARPA (Metallothionein-like protein type 3 OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.148e-23
Identity = 46/66 (69.70%), Postives = 54/66 (81.82%), Query Frame = 3
Query:   84 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVGTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 281
            MSDTCGNCDCAD++QCVKKGSSY AD +ET+ S +   VVMD  AAE +G CKCGP+C+C NCTCG
Sbjct:    1 MSDTCGNCDCADKTQCVKKGSSYTADIIETEKSIM--TVVMDAPAAENDGKCKCGPSCSCTNCTCG 64          
BLAST of CK939437 vs. ExPASy Swiss-Prot
Match: MT3_MUSAC (Metallothionein-like protein type 3 OS=Musa acuminata PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 9.339e-19
Identity = 39/64 (60.94%), Postives = 48/64 (75.00%), Query Frame = 3
Query:   93 TCGNCDCADRSQCVKKGSSYAADFVETDLSFVGTVVVMDVQAAEAEGNCKCGPTCACVNCTCGS 284
            TCGNCDC D+SQCVKKG+SY  D VET+ S+V  V+V   +AAE +G CKCG  CAC +C CG+
Sbjct:    3 TCGNCDCVDKSQCVKKGNSYGIDIVETEKSYVDEVIVA-AEAAEHDGKCKCGAACACTDCKCGN 65          
BLAST of CK939437 vs. ExPASy Swiss-Prot
Match: MT3_ACTDE (Metallothionein-like protein type 3 OS=Actinidia deliciosa GN=pKIWI503 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.593e-18
Identity = 44/65 (67.69%), Postives = 49/65 (75.38%), Query Frame = 3
Query:   84 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVGTVVVMDVQAAEAEGNCKCGPTCACVNCTC 278
            MSD CGNCDCAD SQCVKKG+S   D VETD S++  VV M V AAE+ G CKCG +C CVNCTC
Sbjct:    1 MSDKCGNCDCADSSQCVKKGNSI--DIVETDKSYIEDVV-MGVPAAESGGKCKCGTSCPCVNCTC 62          
BLAST of CK939437 vs. ExPASy Swiss-Prot
Match: MT3_PRUAV (Metallothionein-like protein 1 OS=Prunus avium GN=MT1 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.322e-16
Identity = 38/65 (58.46%), Postives = 45/65 (69.23%), Query Frame = 3
Query:   84 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVGTVVVMDVQAAEAEGNCKCGPTCACVNCTC 278
            MS  C NCDC+D SQC KKG S+    VET+   + TV+ MD  AAE  GNCKCGP+CACV+C C
Sbjct:    1 MSSKCSNCDCSDSSQCTKKGYSFDLVIVETENRSMDTVI-MDAPAAENGGNCKCGPSCACVDCKC 64          
BLAST of CK939437 vs. ExPASy Swiss-Prot
Match: MT3_MALDO (Metallothionein-like protein type 3 OS=Malus domestica GN=MT2 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.322e-16
Identity = 39/66 (59.09%), Postives = 46/66 (69.70%), Query Frame = 3
Query:   84 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVGTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 281
            MS  C NCDCAD +QCVKKG+SY    VET+   + TV V D  AAE +G CKCG  C+CV+CTCG
Sbjct:    1 MSGKCDNCDCADSTQCVKKGNSYDLVIVETENRSMDTVFV-DAPAAEHDGKCKCGTGCSCVSCTCG 65          
BLAST of CK939437 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSJ (Metallothionein-like protein 3A OS=Oryza sativa subsp. japonica GN=MT3A PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.649e-15
Identity = 36/66 (54.55%), Postives = 43/66 (65.15%), Query Frame = 3
Query:   84 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVGTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 281
            MSD CGNCDCAD+SQCVKKG+SY    VE + S        +V A E  G CKCG +C+C +C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSH-----FEEVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of CK939437 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSI (Metallothionein-like protein 3A OS=Oryza sativa subsp. indica GN=MT3A PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.649e-15
Identity = 36/66 (54.55%), Postives = 43/66 (65.15%), Query Frame = 3
Query:   84 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVGTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 281
            MSD CGNCDCAD+SQCVKKG+SY    VE + S        +V A E  G CKCG +C+C +C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSH-----FEEVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of CK939437 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSJ (Metallothionein-like protein 3B OS=Oryza sativa subsp. japonica GN=MT3B PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.632e-13
Identity = 33/66 (50.00%), Postives = 41/66 (62.12%), Query Frame = 3
Query:   84 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVGTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 281
            MSD CGNCDCAD+SQCVKKG+SY    V+ + S     +  +V   E +G CKC   C+C  C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVDAEKSHF--EMAEEVGYEENDGKCKCTTGCSCAGCNCG 64          
BLAST of CK939437 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSI (Metallothionein-like protein 3B OS=Oryza sativa subsp. indica GN=MT3B PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.000e-12
Identity = 32/66 (48.48%), Postives = 41/66 (62.12%), Query Frame = 3
Query:   84 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVGTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 281
            MSD CG+CDCAD+SQCVKKG+SY    V+ + S     +  +V   E +G CKC   C+C  C CG
Sbjct:    1 MSDKCGHCDCADKSQCVKKGTSYGVVIVDAEKSHF--EMAEEVGYEENDGKCKCTTGCSCAGCNCG 64          
The following BLAST results are available for this feature:
BLAST of CK939437 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
MT3_CARPA2.148e-2369.70Metallothionein-like protein type 3 OS=Carica papa... [more]
MT3_MUSAC9.339e-1960.94Metallothionein-like protein type 3 OS=Musa acumin... [more]
MT3_ACTDE1.593e-1867.69Metallothionein-like protein type 3 OS=Actinidia d... [more]
MT3_PRUAV3.322e-1658.46Metallothionein-like protein 1 OS=Prunus avium GN=... [more]
MT3_MALDO3.322e-1659.09Metallothionein-like protein type 3 OS=Malus domes... [more]
MT3A_ORYSJ1.649e-1554.55Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3A_ORYSI1.649e-1554.55Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3B_ORYSJ2.632e-1350.00Metallothionein-like protein 3B OS=Oryza sativa su... [more]
MT3B_ORYSI1.000e-1248.48Metallothionein-like protein 3B OS=Oryza sativa su... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004750_E08 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IIF_E08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939437 ID=CK939437; Name=CK939437; organism=Citrus sinensis; type=EST; length=563bp
ATCACAGCAAAGCAAAGCAAGTTTCGTACAATAAAGAGCCCTCTATTTCC
AGTTTTAAGTTCTAAGTTCTAAGCTCAATCAACATGTCGGACACCTGCGG
CAACTGCGACTGCGCTGACAGGAGCCAGTGTGTGAAGAAGGGAAGCAGCT
ATGCTGCTGACTTCGTCGAGACTGACTTGAGCTTTGTCGGCACCGTTGTT
GTCATGGACGTTCAGGCTGCTGAGGCTGAAGGTAACTGCAAGTGCGGCCC
CACCTGCGCTTGTGTGAACTGCACTTGTGGTAGTCACTAATAAGCAAACA
CATGCAGCAAAAAATAAGAAGCTGCAAGTGTGCCTAAATATTGTGGGGGT
TAAGAATAATGTAAGGGTGATTAAAAAAAAAAAGAAAAATTCTCTACTTC
GTTTTTATGATGGTCTACTACTAGTGTGTGGAGTGATGTGCGTGTTGTGT
CACCCATCACTCGTAATGTTTTGTGTTTCCTTCTTCATAATCATGTAATA
TATGGCCATGGCCATGACCGTGGCCTTGTGTGGCAAAAAAAAAAAAAAAA
AAAAAAAAAAAAA
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