CX675681

Overview
NameCX675681
Unique NameCX675681
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length752
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1740 contig Csv1_Contig1740:234..985. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX675681 vs. ExPASy Swiss-Prot
Match: UMP6_ARATH (Uncharacterized protein At1g47420, mitochondrial OS=Arabidopsis thaliana GN=At1g47420 PE=1 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 4.498e-69
Identity = 125/177 (70.62%), Postives = 150/177 (84.75%), Query Frame = -2 
Query:  203 MSIGCTRSFSEDVAHMPVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIGIIMNIKMEFDDEIGLSGENVKPLSNELSSAIRTVYERYATYLDAFGPDESYLRKKVETELGSKMIFLKMRCAGLGSEWGKVTVLGTSGLAGSYVEQRA 733
            M +G  R FSEDV+HMP + D ++  AFKDLMAADW ELP++V+ DAK+A+S+N DDKAGQE LKNVF AAEAVEEF GI+ +IKME DD IG+SGE VKPL N+++ A+RT Y+RYA YLD+F P+E YL+KKVE ELG+KMI LKMRC+GLGSEWGKVTVLGTSGL+GSYVEQRA
Sbjct:   81 MGMGQVRRFSEDVSHMPEMEDSDVLNAFKDLMAADWAELPSAVVKDAKTAISKNTDDKAGQEALKNVFRAAEAVEEFGGILTSIKMEIDDSIGMSGEGVKPLPNDITDALRTAYQRYAEYLDSFEPEEVYLKKKVEMELGTKMIHLKMRCSGLGSEWGKVTVLGTSGLSGSYVEQRA 257
The following BLAST results are available for this feature:
BLAST of CX675681 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
UMP6_ARATH4.498e-6970.62Uncharacterized protein At1g47420, mitochondrial O... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_64A04_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-64A04-A8-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675681 ID=CX675681; Name=CX675681; organism=Citrus sinensis; type=EST; length=752bp
TTTTTTTTTTTTTAAAACACGATAAACCACAGATTTATTAATTCTTAGTT
ACTGCTGACAAAAGAAGCTTTTATTCATCTGCCATGCAATTCCAACCGCG
GTTTTGCTGGAGTGAGTATAACAAATTGTCTCCCACTACTCAGAAGCAAG
TTCCAGATGTAAAGAAACCCATAATCACAATAAACCTTTCAGCTATGGGC
TAAGCTCTCTGTTCAACATATGACCCCGCAAGTCCTGAGGTTCCAAGAAC
AGTAACCTTTCCCCACTCAGAACCAAGGCCGGCACATCTCATCTTTAGGA
AAATCATTTTTGAACCCAACTCTGTTTCTACCTTCTTCCGCAGATAGGAT
TCATCAGGGCCAAATGCATCCAAGTAGGTAGCATAACGTTCATAAACTGT
ACGAATTGCAGAGGATAATTCATTTGACAAGGGTTTTACATTCTCACCAC
TTAGCCCAATTTCATCATCAAATTCCATTTTAATGTTCATAATAATCCCA
ATGAATTCCTCAACTGCTTCAGCAGCACTGAAAACATTTTTCAAGACCTC
CTGGCCAGCCTTGTCATCATTATTTCTGGACAACGCACTCTTTGCATCAT
GGATGACAGAAGCAGGAAGCTCACCCCAGTCTGCAGCCATCAAGTCCTTG
AAAGCACGCTGAATTTCAGGGTCTCTTATTACAGGCATGTGAGCAACATC
TTCACTGAAAGAACGGGTGCATCCTATGCTCATCACAAGAGAAGACCGGC
AA
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