CK939431

Overview
NameCK939431
Unique NameCK939431
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length644
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939431 vs. ExPASy Swiss-Prot
Match: C3H29_ARATH (Zinc finger CCCH domain-containing protein 29 OS=Arabidopsis thaliana GN=At2g40140 PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.031e-41
Identity = 89/173 (51.45%), Postives = 119/173 (68.79%), Query Frame = 2
Query:  134 SNSKFCSSNFLMEGGLPKLK--DGALYNKSSILLELSASDDISAFKREIEEK-GFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELL 643
            + S  CSS  L E    + K  DGA    ++ LLE +A DD+S+FKREIEE    ++DE  FWY RR+GSKKMGFEERTP+M+AAM+GS+ VL Y+I TG+ +VNR C  +  TALHCAV+G + S  E++K+LL ASA  NCVD  GNKPVDL+    +   +  ++A+E+L
Sbjct:    4 AKSNLCSSKTLTEVEFMRQKSEDGA---SATCLLEFAACDDLSSFKREIEENPSVEIDESGFWYCRRVGSKKMGFEERTPLMVAAMYGSMEVLNYIIATGRSDVNRVCSDEKVTALHCAVSGCSVSIVEIIKILLDASASPNCVDANGNKPVDLLAKDSRFVPNQSRKAVEVL 173          
BLAST of CK939431 vs. ExPASy Swiss-Prot
Match: C3H47_ARATH (Zinc finger CCCH domain-containing protein 47 OS=Arabidopsis thaliana GN=At3g55980 PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 6.686e-41
Identity = 83/168 (49.40%), Postives = 114/168 (67.86%), Query Frame = 2
Query:  140 SKFCSSNFLMEGGLPKLKDGALYNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELL 643
            S  CSS  L E     ++      ++ +LLE +A DD+ +FKRE+EEKG D+DE   WY RR+GSKKMG EERTP+M+AAM+GS+ VL +++ TGK +VNRACG +  T LHCAVAG + +  EV+ +LL ASA VN VD  GN+P+D+     +     R++A+ELL
Sbjct:    7 SNLCSSRTLTE-----IESRQKEEETMLLLEFAACDDLDSFKREVEEKGLDLDESGLWYCRRVGSKKMGLEERTPLMVAAMYGSIKVLTFIVSTGKSDVNRACGEERVTPLHCAVAGCSVNMIEVINVLLDASALVNSVDANGNQPLDVFVRVSRFVASPRRKAVELL 169          
BLAST of CK939431 vs. ExPASy Swiss-Prot
Match: C3H66_ARATH (Zinc finger CCCH domain-containing protein 66 OS=Arabidopsis thaliana GN=At5g58620 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.821e-38
Identity = 80/145 (55.17%), Postives = 105/145 (72.41%), Query Frame = 2
Query:  212 KSSILLELSASDDISAFKREIEEKGFD-VDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELL 643
            K S+LLE SA +D+S FK  +EE+G + +D    WYGRR+GSKKMGFEERTP+MIAA+FGS  V+ Y+I TG V+VNR+CGSDG TALHCAV+G + +S E+V LLL  SA+ +  D YGNKP D+I   +     +R + +E L
Sbjct:   10 KFSLLLESSACNDLSGFKSLVEEEGLESIDGSGLWYGRRLGSKKMGFEERTPLMIAALFGSKEVVDYIISTGLVDVNRSCGSDGATALHCAVSGLSANSLEIVTLLLKGSANPDSCDAYGNKPGDVIFPCLSPVFSARMKVLERL 154          
BLAST of CK939431 vs. ExPASy Swiss-Prot
Match: C3H30_ARATH (Zinc finger CCCH domain-containing protein 30 OS=Arabidopsis thaliana GN=At2g41900 PE=1 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 1.446e-27
Identity = 61/127 (48.03%), Postives = 86/127 (67.72%), Query Frame = 2
Query:  224 LLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMK 604
            LLEL+A++D+   +  IE     VDE   WYGR+ GSK M  + RTP+M+AA +GS+ V+K ++     +VNRACG+D  TALHCA +GGA ++ +VVKLLL+A AD+N +D  G +  D+I V  K
Sbjct:   48 LLELAANNDVEGVRLSIERDPSCVDEAGLWYGRQKGSKAMVNDYRTPLMVAATYGSIDVIKLIVSLTDADVNRACGNDQTTALHCAASGGAVNAIQVVKLLLAAGADLNLLDAEGQRAGDVIVVPPK 174          
BLAST of CK939431 vs. ExPASy Swiss-Prot
Match: C3H24_ORYSJ (Zinc finger CCCH domain-containing protein 24 OS=Oryza sativa subsp. japonica GN=Os03g0698800 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.308e-25
Identity = 62/128 (48.44%), Postives = 79/128 (61.72%), Query Frame = 2
Query:  224 LLELSASDDISAFKREIEEKG-FDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMK 604
            LLEL+A DD    +R +E       DE   WYGRR        E RTP+M+AA +GS+AVL+ ++    V+VNR CGSDG TALHCA +GG+ S  E VKLLL+A AD +  D  G +P D+I V  K
Sbjct:   70 LLELAADDDAEGLRRALERAPPAAADEAGLWYGRR-----KVLEHRTPLMVAATYGSLAVLRLLLSLPSVDVNRRCGSDGTTALHCAASGGSPSCVEAVKLLLAAGADADATDASGYRPADVISVPPK 192          
BLAST of CK939431 vs. ExPASy Swiss-Prot
Match: C3H56_ARATH (Zinc finger CCCH domain-containing protein 56 OS=Arabidopsis thaliana GN=At5g12850 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.938e-25
Identity = 55/142 (38.73%), Postives = 94/142 (66.20%), Query Frame = 2
Query:  188 LKDGALYNKS-SILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSP 610
            + D A +  S S LLE +A +D+  F+R++ +    +++   WY R+   ++M  E+RTP+M+A+++GS+ V+K+++   +  +N +CG D  TALHCA +G + +S +VVKLLLS  AD N  D +GN+PVD++ V+  +P
Sbjct:   29 MNDAAEWEHSFSALLEFAADNDVEGFRRQLSDVSC-INQMGLWYRRQRFVRRMVLEQRTPLMVASLYGSLDVVKFILSFPEAELNLSCGPDKSTALHCAASGASVNSLDVVKLLLSVGADPNIPDAHGNRPVDVLVVSPHAP 169          
BLAST of CK939431 vs. ExPASy Swiss-Prot
Match: C3H33_ORYSJ (Zinc finger CCCH domain-containing protein 33 OS=Oryza sativa subsp. japonica GN=Os05g0128200 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.022e-21
Identity = 59/156 (37.82%), Postives = 89/156 (57.05%), Query Frame = 2
Query:  179 LPKLKDGALYNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRI-GSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELL 643
            LP+ +  A    +S+LLEL+A+DD++A +R +EE+   +     WYG    G  ++G E RT  M+AA++GS  VL YV+        RA  +DG T LH A AGGA ++    +LLL+A A V+ +   G +  DL+P A      + ++AI LL
Sbjct:   13 LPQQQKEATVMAASLLLELAAADDVAAVRRVVEEEKVSLGVAGLWYGPSASGVARLGMERRTAAMVAALYGSTGVLGYVVAAAPAEAARASETDGATPLHMAAAGGAANAVAATRLLLAAGASVDALSASGLRAGDLLPRAT-----AAEKAIRLL 163          
BLAST of CK939431 vs. ExPASy Swiss-Prot
Match: C3H50_ORYSJ (Zinc finger CCCH domain-containing protein 50 OS=Oryza sativa subsp. japonica GN=Os07g0568300 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.497e-20
Identity = 57/143 (39.86%), Postives = 81/143 (56.64%), Query Frame = 2
Query:  197 GALYNKSSILLELSASDDISAFKREIEEKGFDV----DEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGK-VNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSP 610
            G   ++ + LLEL+A+DD+   +  + E G +     D    WYGR        +E RTP+M+AA +GS  V+  ++  G  V+VNR  G+DG TALHCA +GG+ ++  VVKLLL+A AD    D  G  P D+I     SP
Sbjct:   18 GGRRDRLAALLELAAADDVDGLRGALAEGGEEAAELADGVGLWYGR-----SKAYEARTPLMVAATYGSAGVVSLLVGLGGCVDVNRRPGADGATALHCAASGGSRNAVAVVKLLLAAGADPATPDSAGRFPADVILAPPASP 155          
The following BLAST results are available for this feature:
BLAST of CK939431 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
C3H29_ARATH1.031e-4151.45Zinc finger CCCH domain-containing protein 29 OS=A... [more]
C3H47_ARATH6.686e-4149.40Zinc finger CCCH domain-containing protein 47 OS=A... [more]
C3H66_ARATH1.821e-3855.17Zinc finger CCCH domain-containing protein 66 OS=A... [more]
C3H30_ARATH1.446e-2748.03Zinc finger CCCH domain-containing protein 30 OS=A... [more]
C3H24_ORYSJ2.308e-2548.44Zinc finger CCCH domain-containing protein 24 OS=O... [more]
C3H56_ARATH3.938e-2538.73Zinc finger CCCH domain-containing protein 56 OS=A... [more]
C3H33_ORYSJ2.022e-2137.82Zinc finger CCCH domain-containing protein 33 OS=O... [more]
C3H50_ORYSJ8.497e-2039.86Zinc finger CCCH domain-containing protein 50 OS=O... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004750_F08 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IIF_F08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939431 ID=CK939431; Name=CK939431; organism=Citrus sinensis; type=EST; length=644bp
GGGGCTCTCACTTCACACAAGTCATTTCTCAAAAGATGAGTCTTTTTGTT
CCTCTTCTTCTATAAAATTAACACTCTTAAAGAATCAAAGAATCTTATCA
ACTTATCAAGCTCTACTCATACGAANNNGGTATTCAAATAGTAAATTCTG
CAGCTCAAATTTCCTCATGGAAGGTGGACTCCCCAAGCTAAAAGATGGTG
CCTTGTATAACAAATCCTCAATTTTGCTGGAATTGTCAGCTTCTGACGAT
ATCTCTGCCTTTAAGAGAGAAATAGAAGAGAAGGGTTTTGATGTTGATGA
GCCCAGCTTCTGGTATGGTAGGAGAATTGGATCAAAAAAGATGGGATTTG
AAGAGAGGACCCCAATCATGATTGCTGCCATGTTTGGAAGTGTTGCGGTA
TTGAAATATGTTATTGAAACAGGCAAAGTTAATGTGAATAGGGCCTGTGG
TTCTGATGGTTTCACTGCCCTTCACTGTGCTGTTGCTGGTGGTGCCAACT
CTTCCTTTGAGGTGGTCAAGCTCTTACTCAGTGCATCTGCTGATGTTAAC
TGTGTTGATGTGTATGGGAATAAGCCAGTTGATCTCATTCCAGTTGCTAT
GAAATCACCACTCCATTCAAGAAAAAGGGCAATAGAGTTATTGT
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