CK939431
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK939431 vs. ExPASy Swiss-Prot
Match: C3H29_ARATH (Zinc finger CCCH domain-containing protein 29 OS=Arabidopsis thaliana GN=At2g40140 PE=2 SV=1) HSP 1 Score: 169.859 bits (429), Expect = 1.031e-41 Identity = 89/173 (51.45%), Postives = 119/173 (68.79%), Query Frame = 2 Query: 134 SNSKFCSSNFLMEGGLPKLK--DGALYNKSSILLELSASDDISAFKREIEEK-GFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELL 643 + S CSS L E + K DGA ++ LLE +A DD+S+FKREIEE ++DE FWY RR+GSKKMGFEERTP+M+AAM+GS+ VL Y+I TG+ +VNR C + TALHCAV+G + S E++K+LL ASA NCVD GNKPVDL+ + + ++A+E+L Sbjct: 4 AKSNLCSSKTLTEVEFMRQKSEDGA---SATCLLEFAACDDLSSFKREIEENPSVEIDESGFWYCRRVGSKKMGFEERTPLMVAAMYGSMEVLNYIIATGRSDVNRVCSDEKVTALHCAVSGCSVSIVEIIKILLDASASPNCVDANGNKPVDLLAKDSRFVPNQSRKAVEVL 173
BLAST of CK939431 vs. ExPASy Swiss-Prot
Match: C3H47_ARATH (Zinc finger CCCH domain-containing protein 47 OS=Arabidopsis thaliana GN=At3g55980 PE=2 SV=1) HSP 1 Score: 167.162 bits (422), Expect = 6.686e-41 Identity = 83/168 (49.40%), Postives = 114/168 (67.86%), Query Frame = 2 Query: 140 SKFCSSNFLMEGGLPKLKDGALYNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELL 643 S CSS L E ++ ++ +LLE +A DD+ +FKRE+EEKG D+DE WY RR+GSKKMG EERTP+M+AAM+GS+ VL +++ TGK +VNRACG + T LHCAVAG + + EV+ +LL ASA VN VD GN+P+D+ + R++A+ELL Sbjct: 7 SNLCSSRTLTE-----IESRQKEEETMLLLEFAACDDLDSFKREVEEKGLDLDESGLWYCRRVGSKKMGLEERTPLMVAAMYGSIKVLTFIVSTGKSDVNRACGEERVTPLHCAVAGCSVNMIEVINVLLDASALVNSVDANGNQPLDVFVRVSRFVASPRRKAVELL 169
BLAST of CK939431 vs. ExPASy Swiss-Prot
Match: C3H66_ARATH (Zinc finger CCCH domain-containing protein 66 OS=Arabidopsis thaliana GN=At5g58620 PE=2 SV=1) HSP 1 Score: 159.073 bits (401), Expect = 1.821e-38 Identity = 80/145 (55.17%), Postives = 105/145 (72.41%), Query Frame = 2 Query: 212 KSSILLELSASDDISAFKREIEEKGFD-VDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELL 643 K S+LLE SA +D+S FK +EE+G + +D WYGRR+GSKKMGFEERTP+MIAA+FGS V+ Y+I TG V+VNR+CGSDG TALHCAV+G + +S E+V LLL SA+ + D YGNKP D+I + +R + +E L Sbjct: 10 KFSLLLESSACNDLSGFKSLVEEEGLESIDGSGLWYGRRLGSKKMGFEERTPLMIAALFGSKEVVDYIISTGLVDVNRSCGSDGATALHCAVSGLSANSLEIVTLLLKGSANPDSCDAYGNKPGDVIFPCLSPVFSARMKVLERL 154
BLAST of CK939431 vs. ExPASy Swiss-Prot
Match: C3H30_ARATH (Zinc finger CCCH domain-containing protein 30 OS=Arabidopsis thaliana GN=At2g41900 PE=1 SV=2) HSP 1 Score: 122.865 bits (307), Expect = 1.446e-27 Identity = 61/127 (48.03%), Postives = 86/127 (67.72%), Query Frame = 2 Query: 224 LLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMK 604 LLEL+A++D+ + IE VDE WYGR+ GSK M + RTP+M+AA +GS+ V+K ++ +VNRACG+D TALHCA +GGA ++ +VVKLLL+A AD+N +D G + D+I V K Sbjct: 48 LLELAANNDVEGVRLSIERDPSCVDEAGLWYGRQKGSKAMVNDYRTPLMVAATYGSIDVIKLIVSLTDADVNRACGNDQTTALHCAASGGAVNAIQVVKLLLAAGADLNLLDAEGQRAGDVIVVPPK 174
BLAST of CK939431 vs. ExPASy Swiss-Prot
Match: C3H24_ORYSJ (Zinc finger CCCH domain-containing protein 24 OS=Oryza sativa subsp. japonica GN=Os03g0698800 PE=2 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 2.308e-25 Identity = 62/128 (48.44%), Postives = 79/128 (61.72%), Query Frame = 2 Query: 224 LLELSASDDISAFKREIEEKG-FDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMK 604 LLEL+A DD +R +E DE WYGRR E RTP+M+AA +GS+AVL+ ++ V+VNR CGSDG TALHCA +GG+ S E VKLLL+A AD + D G +P D+I V K Sbjct: 70 LLELAADDDAEGLRRALERAPPAAADEAGLWYGRR-----KVLEHRTPLMVAATYGSLAVLRLLLSLPSVDVNRRCGSDGTTALHCAASGGSPSCVEAVKLLLAAGADADATDASGYRPADVISVPPK 192
BLAST of CK939431 vs. ExPASy Swiss-Prot
Match: C3H56_ARATH (Zinc finger CCCH domain-containing protein 56 OS=Arabidopsis thaliana GN=At5g12850 PE=2 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 3.938e-25 Identity = 55/142 (38.73%), Postives = 94/142 (66.20%), Query Frame = 2 Query: 188 LKDGALYNKS-SILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSP 610 + D A + S S LLE +A +D+ F+R++ + +++ WY R+ ++M E+RTP+M+A+++GS+ V+K+++ + +N +CG D TALHCA +G + +S +VVKLLLS AD N D +GN+PVD++ V+ +P Sbjct: 29 MNDAAEWEHSFSALLEFAADNDVEGFRRQLSDVSC-INQMGLWYRRQRFVRRMVLEQRTPLMVASLYGSLDVVKFILSFPEAELNLSCGPDKSTALHCAASGASVNSLDVVKLLLSVGADPNIPDAHGNRPVDVLVVSPHAP 169
BLAST of CK939431 vs. ExPASy Swiss-Prot
Match: C3H33_ORYSJ (Zinc finger CCCH domain-containing protein 33 OS=Oryza sativa subsp. japonica GN=Os05g0128200 PE=2 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 2.022e-21 Identity = 59/156 (37.82%), Postives = 89/156 (57.05%), Query Frame = 2 Query: 179 LPKLKDGALYNKSSILLELSASDDISAFKREIEEKGFDVDEPSFWYGRRI-GSKKMGFEERTPIMIAAMFGSVAVLKYVIETGKVNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSPLHSRKRAIELL 643 LP+ + A +S+LLEL+A+DD++A +R +EE+ + WYG G ++G E RT M+AA++GS VL YV+ RA +DG T LH A AGGA ++ +LLL+A A V+ + G + DL+P A + ++AI LL Sbjct: 13 LPQQQKEATVMAASLLLELAAADDVAAVRRVVEEEKVSLGVAGLWYGPSASGVARLGMERRTAAMVAALYGSTGVLGYVVAAAPAEAARASETDGATPLHMAAAGGAANAVAATRLLLAAGASVDALSASGLRAGDLLPRAT-----AAEKAIRLL 163
BLAST of CK939431 vs. ExPASy Swiss-Prot
Match: C3H50_ORYSJ (Zinc finger CCCH domain-containing protein 50 OS=Oryza sativa subsp. japonica GN=Os07g0568300 PE=2 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 8.497e-20 Identity = 57/143 (39.86%), Postives = 81/143 (56.64%), Query Frame = 2 Query: 197 GALYNKSSILLELSASDDISAFKREIEEKGFDV----DEPSFWYGRRIGSKKMGFEERTPIMIAAMFGSVAVLKYVIETGK-VNVNRACGSDGFTALHCAVAGGANSSFEVVKLLLSASADVNCVDVYGNKPVDLIPVAMKSP 610 G ++ + LLEL+A+DD+ + + E G + D WYGR +E RTP+M+AA +GS V+ ++ G V+VNR G+DG TALHCA +GG+ ++ VVKLLL+A AD D G P D+I SP Sbjct: 18 GGRRDRLAALLELAAADDVDGLRGALAEGGEEAAELADGVGLWYGR-----SKAYEARTPLMVAATYGSAGVVSLLVGLGGCVDVNRRPGADGATALHCAASGGSRNAVAVVKLLLAAGADPATPDSAGRFPADVILAPPASP 155 The following BLAST results are available for this feature:
BLAST of CK939431 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 8
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CK939431 ID=CK939431; Name=CK939431; organism=Citrus sinensis; type=EST; length=644bpback to top |