CX675680

Overview
NameCX675680
Unique NameCX675680
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length866
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1740 contig Csv1_Contig1740:56..921. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX675680 vs. ExPASy Swiss-Prot
Match: UMP6_ARATH (Uncharacterized protein At1g47420, mitochondrial OS=Arabidopsis thaliana GN=At1g47420 PE=1 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 4.319e-69
Identity = 126/184 (68.48%), Postives = 152/184 (82.61%), Query Frame = 3 
Query:  177 DCRSSLVMSIGCTRSFSEDVAHMPVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIGIIMNIKMEFDDEIGLSGENVKPLSNELSSAIRTVYERYATYLDAFGPDESYLRKKVETELGSKMIFLKMRCAGLGSEWGKVTVLGTSGLAGSYVEQRA 728
            D +    M +G  R FSEDV+HMP + D ++  AFKDLMAADW ELP++V+ DAK+A+S+N DDKAGQE LKNVF AAEAVEEF GI+ +IKME DD IG+SGE VKPL N+++ A+RT Y+RYA YLD+F P+E YL+KKVE ELG+KMI LKMRC+GLGSEWGKVTVLGTSGL+GSYVEQRA
Sbjct:   74 DLQYPRAMGMGQVRRFSEDVSHMPEMEDSDVLNAFKDLMAADWAELPSAVVKDAKTAISKNTDDKAGQEALKNVFRAAEAVEEFGGILTSIKMEIDDSIGMSGEGVKPLPNDITDALRTAYQRYAEYLDSFEPEEVYLKKKVEMELGTKMIHLKMRCSGLGSEWGKVTVLGTSGLSGSYVEQRA 257
The following BLAST results are available for this feature:
BLAST of CX675680 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
UMP6_ARATH4.319e-6968.48Uncharacterized protein At1g47420, mitochondrial O... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_64A04_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-64A04-A8-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675680 ID=CX675680; Name=CX675680; organism=Citrus sinensis; type=EST; length=866bp
GAGAAATGGAGAAGATAGCAGTAATGAGTGTCAGATCCATACGGCGAGCA
GCGTGCGTCAGATCTTCAATAATAGCCGCCGCCAACAACCATCATCTCCG
CCACTTGTCGTCTTCTCGATCGCTCTTCAGTTTATCTTCACCTGCTGCTT
CGATTCCTTCCAAATCCATCCCTTTTGATTGCCGGTCTTCTCTTGTGATG
AGCATAGGATGCACCCGTTCTTTCAGTGAAGATGTTGCTCACATGCCTGT
AATAAGAGACCCTGAAATTCAGCGTGCTTTCAAGGACTTGATGGCTGCAG
ACTGGGGTGAGCTTCCTGCTTCTGTCATCCATGATGCAAAGAGTGCGTTG
TCCAGAAATAATGATGACAAGGCTGGCCAGGAGGTCTTGAAAAATGTTTT
CAGTGCTGCTGAAGCAGTTGAGGAATTCATTGGGATTATTATGAACATTA
AAATGGAATTTGATGATGAAATTGGGCTAAGTGGTGAGAATGTAAAACCC
TTGTCAAATGAATTATCCTCTGCAATTCGTACAGTTTATGAACGTTATGC
TACCTACTTGGATGCATTTGGCCCTGATGAATCCTATCTGCGGAAGAAGG
TAGAAACAGAGTTGGGTTCAAAAATGATTTTCCTAAAGATGAGATGTGCC
GGCCTTGGTTCTGAGTGGGGAAAGGTTACTGTTCTTGGAACCTCAGGACT
TGCGGGGTCATATGTTGAACAGAGAGCTTAGCCCATAGCTGAAAGGTTTA
TTGTGATTATGGGTTTCTTTACATCTGGAACTTGCTTCTGAGTAGTGGGA
GACAATTTGTTATACTCACTCCAGCAAAACCGCGGTTGGGATTGCATGGC
AGATGAATAAAAGCTT
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