CK939423

Overview
NameCK939423
Unique NameCK939423
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length684
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939423 vs. ExPASy Swiss-Prot
Match: 1A1C_SOYBN (1-aminocyclopropane-1-carboxylate synthase OS=Glycine max GN=ACS1 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 5.896e-38
Identity = 68/99 (68.69%), Postives = 84/99 (84.85%), Query Frame = 3
Query:  273 NQVQLLSKIAAGNGHGEDSPYFDGWKAFESDPYHPTKNPNGVIQMGLAENLLCHELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNVCNK 569
            +Q QLLSK+  G+GHGE SPYFDGWKA++ +P+HP +NPNGVIQMGLAEN L  +LVEDW++NNP+ASIC+ EG+N+F+ IA FQDYHGLPEFRN   K
Sbjct:    7 DQTQLLSKMVIGDGHGEASPYFDGWKAYDENPFHPKENPNGVIQMGLAENQLTSDLVEDWILNNPEASICTPEGINDFRAIANFQDYHGLPEFRNAVAK 105          
BLAST of CK939423 vs. ExPASy Swiss-Prot
Match: 1A12_SOLLC (1-aminocyclopropane-1-carboxylate synthase 2 OS=Solanum lycopersicum GN=ACS2 PE=1 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 7.207e-36
Identity = 68/105 (64.76%), Postives = 80/105 (76.19%), Query Frame = 3
Query:  255 MAFALSNQVQLLSKIAAGNGHGEDSPYFDGWKAFESDPYHPTKNPNGVIQMGLAENLLCHELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNVCNK 569
            M F ++    +LSK+A    HGE+SPYFDGWKA++SDP+HP KNPNGVIQMGLAEN LC +L+EDW+  NPK SICS EG+  FK IA FQDYHGLPEFR    K
Sbjct:    1 MGFEIAKTNSILSKLATNEEHGENSPYFDGWKAYDSDPFHPLKNPNGVIQMGLAENQLCLDLIEDWIKRNPKGSICS-EGIKSFKAIANFQDYHGLPEFRKAIAK 104          
BLAST of CK939423 vs. ExPASy Swiss-Prot
Match: 1A11_PRUMU (1-aminocyclopropane-1-carboxylate synthase 1 OS=Prunus mume GN=ACS1 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.739e-35
Identity = 64/90 (71.11%), Postives = 75/90 (83.33%), Query Frame = 3
Query:  285 LLSKIAAGNGHGEDSPYFDGWKAFESDPYHPTKNPNGVIQMGLAENLLCHELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFR 554
            LLSKIA   GHGE+SPYFDGWKA++ +P+HPTKNP GVIQMGLAEN L  + +EDW+  NPKASIC+ EG+ EFK +AIFQDYHG PEFR
Sbjct:   12 LLSKIATSEGHGENSPYFDGWKAYDRNPFHPTKNPEGVIQMGLAENQLSFDSIEDWIKKNPKASICTPEGVEEFKNVAIFQDYHGFPEFR 101          
BLAST of CK939423 vs. ExPASy Swiss-Prot
Match: 1A1C_DIACA (1-aminocyclopropane-1-carboxylate synthase OS=Dianthus caryophyllus GN=ACS2 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 7.968e-35
Identity = 65/96 (67.71%), Postives = 79/96 (82.29%), Query Frame = 3
Query:  282 QLLSKIAAGNGHGEDSPYFDGWKAFESDPYHPTKNPNGVIQMGLAENLLCHELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNVCNK 569
            ++LSKIA  +GHGE+  YFDGWKA++ DPYH TKN NGVIQMGLAEN LC +LV +WL+ NP+ASIC+ EG+N+F  IAIFQDYHGLPEFR+   K
Sbjct:   11 EILSKIATNDGHGENLEYFDGWKAYDRDPYHSTKNSNGVIQMGLAENQLCFDLVTEWLLKNPQASICTNEGVNKFMDIAIFQDYHGLPEFRSAVAK 106          
BLAST of CK939423 vs. ExPASy Swiss-Prot
Match: 1A1C_TOBAC (1-aminocyclopropane-1-carboxylate synthase OS=Nicotiana tabacum GN=ACS1 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.028e-34
Identity = 63/105 (60.00%), Postives = 78/105 (74.29%), Query Frame = 3
Query:  255 MAFALSNQVQLLSKIAAGNGHGEDSPYFDGWKAFESDPYHPTKNPNGVIQMGLAENLLCHELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNVCNK 569
            M F       +LSK+A     GE+SPYFDGWKA+++DP+HP KNPNGVIQMGLAEN LC +L+E+W+  NP ASIC+ EG+  F+ IA FQDYHGLPEFR+   K
Sbjct:    1 MGFENEKNSSILSKLATNEELGENSPYFDGWKAYDNDPFHPLKNPNGVIQMGLAENQLCFDLIEEWIKRNPNASICTTEGIKSFRAIANFQDYHGLPEFRSAIAK 105          
BLAST of CK939423 vs. ExPASy Swiss-Prot
Match: 1A16_ARATH (1-aminocyclopropane-1-carboxylate synthase 6 OS=Arabidopsis thaliana GN=ACS6 PE=1 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 3.955e-34
Identity = 65/107 (60.75%), Postives = 85/107 (79.44%), Query Frame = 3
Query:  255 MAFALSNQ--VQLLSKIAAGNGHGEDSPYFDGWKAFESDPYHPTKNPNGVIQMGLAENLLCHELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRNVCNK 569
            +AFA   +  + LLSKIA+G+GHGE+S YFDGWKA+E +P+HP   P+GVIQMGLAEN LC +L+  W++ +P+ASIC++EG+N+F  IAIFQDYHGLPEFR    K
Sbjct:    2 VAFATEKKQDLNLLSKIASGDGHGENSSYFDGWKAYEENPFHPIDRPDGVIQMGLAENQLCGDLMRKWVLKHPEASICTSEGVNQFSDIAIFQDYHGLPEFRQAVAK 108          
BLAST of CK939423 vs. ExPASy Swiss-Prot
Match: 1A11_CUCPE (1-aminocyclopropane-1-carboxylate synthase 1 OS=Cucurbita pepo GN=ACC1A PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.348e-33
Identity = 62/91 (68.13%), Postives = 75/91 (82.42%), Query Frame = 3
Query:  285 LLSKIAAGNGHGEDSPYFDGWKAFESDPYHPTKNPNGVIQMGLAENLLCHELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRN 557
            LLSKIA  +GHGE+SPYFDGWKA+++DP+HP  NP GVIQMGLAEN L  +++ DW+  +P+ASIC+ EGL  FK IA FQDYHGLPEFRN
Sbjct:   13 LLSKIALDDGHGENSPYFDGWKAYDNDPFHPENNPLGVIQMGLAENQLSFDMIVDWIRKHPEASICTPEGLERFKSIANFQDYHGLPEFRN 103          
BLAST of CK939423 vs. ExPASy Swiss-Prot
Match: 1A11_CUCMA (1-aminocyclopropane-1-carboxylate synthase CMW33 OS=Cucurbita maxima GN=ACS1 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.741e-33
Identity = 61/91 (67.03%), Postives = 75/91 (82.42%), Query Frame = 3
Query:  285 LLSKIAAGNGHGEDSPYFDGWKAFESDPYHPTKNPNGVIQMGLAENLLCHELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFRN 557
            LLSKIA  +GHGE+SPYFDGWKA+++DP+HP  NP GVIQMGLAEN L  +++ DW+  +P+ASIC+ +GL  FK IA FQDYHGLPEFRN
Sbjct:   13 LLSKIAVDDGHGENSPYFDGWKAYDNDPFHPEDNPLGVIQMGLAENQLSFDMIVDWIRKHPEASICTPKGLERFKSIANFQDYHGLPEFRN 103          
BLAST of CK939423 vs. ExPASy Swiss-Prot
Match: 1A11_ARATH (1-aminocyclopropane-1-carboxylate synthase-like protein 1 OS=Arabidopsis thaliana GN=ACS1 PE=2 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 2.834e-32
Identity = 58/91 (63.74%), Postives = 76/91 (83.52%), Query Frame = 3
Query:  282 QLLSKIAAGNGHGEDSPYFDGWKAFESDPYHPTKNPNGVIQMGLAENLLCHELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFR 554
            QLLSK+A  + HGE SPYF GWKA++++P+HPT NP GVIQMGLAEN LC +L+++W+  NP+ASIC+AEG++ F  IA+FQDYHGL +FR
Sbjct:    9 QLLSKLALSDKHGEASPYFHGWKAYDNNPFHPTHNPQGVIQMGLAENQLCSDLIKEWIKENPQASICTAEGIDSFSDIAVFQDYHGLKQFR 99          
BLAST of CK939423 vs. ExPASy Swiss-Prot
Match: 1A12_ARATH (1-aminocyclopropane-1-carboxylate synthase 2 OS=Arabidopsis thaliana GN=ACS2 PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.345e-31
Identity = 57/94 (60.64%), Postives = 77/94 (81.91%), Query Frame = 3
Query:  273 NQVQLLSKIAAGNGHGEDSPYFDGWKAFESDPYHPTKNPNGVIQMGLAENLLCHELVEDWLMNNPKASICSAEGLNEFKGIAIFQDYHGLPEFR 554
            N+  +LSKIA  N HGE+S YFDGWKA++ DP+H ++NP+G+IQMGLAEN LC +L++DW+  NP+ASIC+ EG+++F  IA FQDYHGL +FR
Sbjct:    7 NKGAVLSKIATNNQHGENSEYFDGWKAYDKDPFHLSRNPHGIIQMGLAENQLCLDLIKDWVKENPEASICTLEGIHQFSDIANFQDYHGLKKFR 100          
The following BLAST results are available for this feature:
BLAST of CK939423 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
1A1C_SOYBN5.896e-3868.691-aminocyclopropane-1-carboxylate synthase OS=Glyc... [more]
1A12_SOLLC7.207e-3664.761-aminocyclopropane-1-carboxylate synthase 2 OS=So... [more]
1A11_PRUMU2.739e-3571.111-aminocyclopropane-1-carboxylate synthase 1 OS=Pr... [more]
1A1C_DIACA7.968e-3567.711-aminocyclopropane-1-carboxylate synthase OS=Dian... [more]
1A1C_TOBAC3.028e-3460.001-aminocyclopropane-1-carboxylate synthase OS=Nico... [more]
1A16_ARATH3.955e-3460.751-aminocyclopropane-1-carboxylate synthase 6 OS=Ar... [more]
1A11_CUCPE3.348e-3368.131-aminocyclopropane-1-carboxylate synthase 1 OS=Cu... [more]
1A11_CUCMA9.741e-3367.031-aminocyclopropane-1-carboxylate synthase CMW33 O... [more]
1A11_ARATH2.834e-3263.741-aminocyclopropane-1-carboxylate synthase-like pr... [more]
1A12_ARATH5.345e-3160.641-aminocyclopropane-1-carboxylate synthase 2 OS=Ar... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004750_G07 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IIF_G07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939423 ID=CK939423; Name=CK939423; organism=Citrus sinensis; type=EST; length=684bp
GGGGATGGATCCAACGAAGCTGCATCTGTATCTCAATCTTGCGTACTCTT
GCTGGTGGTAGTTCAGACATCACCATACAGAAACCGTGTGAATAACCTAA
GCGATTGCGAATCCAAAAACCAAATTAGAGCCTCCCCTCACTACAAATAT
TTGCCATCTCTCCTCACTTCTTTCAGTCAATTTCATTCCACTGATCTCGT
TCACACTTGTATCAGTTCAGTGCATTTACTAAATTACTTTCAGAAACAGA
TTAAATGGCCTTCGCGTTGAGTAACCAAGTGCAATTGTTGTCCAAGATTG
CAGCCGGCAACGGCCATGGTGAAGATTCTCCGTATTTCGATGGCTGGAAG
GCTTTCGAAAGTGATCCTTATCATCCCACCAAGAATCCTAATGGGGTTAT
CCAGATGGGTCTAGCTGAGAACCTGCTTTGCCATGAATTGGTTGAAGACT
GGCTCATGAACAACCCAAAGGCCTCCATTTGCTCAGCTGAAGGCCTAAAT
GAATTCAAGGGTATAGCTATCTTTCAGGATTATCACGGCTTGCCAGAGTT
CAGAAATGTATGCAACAAACCTAGCCTTCTACTGAATTAACTCTCTCTAA
GTTGGATTGTTACGTTTAATTAAACGTTTTATACATGGTTCTTAATTAAT
TTACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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