CK939408

Overview
NameCK939408
Unique NameCK939408
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length889
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2181 contig Csv1_Contig2181:1..888. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK939408 vs. ExPASy Swiss-Prot
Match: CP20A_ARATH (Peptidyl-prolyl cis-trans isomerase CYP20-1 OS=Arabidopsis thaliana GN=CYP20-1 PE=1 SV=1)

HSP 1 Score: 318.546 bits (815), Expect = 3.116e-86
Identity = 156/194 (80.41%), Postives = 169/194 (87.11%), Query Frame = 1
Query:  103 MLWAIVLLATFSSIQAKKSDQNLKEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGE 684
            +LW+++LL T S+IQAKKS +NLKEIT+KVYFDVEI GK AGRIVMGLFGK VPKT ENFRALCTGEKGIGK+GK LHYKGS+FHRIIPSFMLQ            ESIYGEKF DENFKLKHTGPG LSMANAG DTNGSQFFITTVTTSWLDGRHVVFGKV++GMDVVYKVEAEG Q+GTPKSKVV+ DSGE
Sbjct:    8 LLWSLLLLGTLSAIQAKKSKENLKEITHKVYFDVEIDGKAAGRIVMGLFGKTVPKTVENFRALCTGEKGIGKNGKALHYKGSSFHRIIPSFMLQGGDFTHGNGMGGESIYGEKFADENFKLKHTGPGFLSMANAGQDTNGSQFFITTVTTSWLDGRHVVFGKVVTGMDVVYKVEAEGNQSGTPKSKVVIVDSGE 201          
BLAST of CK939408 vs. ExPASy Swiss-Prot
Match: CP19D_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-4 OS=Arabidopsis thaliana GN=CYP19-4 PE=1 SV=2)

HSP 1 Score: 302.368 bits (773), Expect = 2.311e-81
Identity = 150/204 (73.53%), Postives = 170/204 (83.33%), Query Frame = 1
Query:   73 MASTKFLPLTMLWAIVLLATFSSIQAKKSDQNLKEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGE 684
            MA   F+   +L  + L    +SIQAK   ++LKE+T+KVYFDVEI GK AGR+V+GLFGKAVPKTAENFRALCTGEKG+GKSGKPLHYKGS FHRIIPSFM+Q            ESIYG+KF DENFKLKHTGPG+LSMAN+G DTNGSQFFITTVTTSWLDGRHVVFGKV+ GMDVVYK+EAEG+Q+GTPKSKVV+ADSGE
Sbjct:    1 MAKASFI---LLGTLFLFGAIASIQAK---EDLKEVTHKVYFDVEIDGKSAGRVVIGLFGKAVPKTAENFRALCTGEKGVGKSGKPLHYKGSKFHRIIPSFMIQGGDFTHGNGMGGESIYGQKFADENFKLKHTGPGVLSMANSGEDTNGSQFFITTVTTSWLDGRHVVFGKVVQGMDVVYKIEAEGKQSGTPKSKVVIADSGE 198          
BLAST of CK939408 vs. ExPASy Swiss-Prot
Match: CYP7_CAEEL (Peptidyl-prolyl cis-trans isomerase 7 OS=Caenorhabditis elegans GN=cyn-7 PE=1 SV=2)

HSP 1 Score: 246.899 bits (629), Expect = 1.152e-64
Identity = 114/166 (68.67%), Postives = 135/166 (81.33%), Query Frame = 1
Query:  187 KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGE 684
            +V+FD+ IAGKP GRIVM L+   VPKTAENFRALCTGEKG+GKSGKPLH+KGS FHRIIP FM+Q            ESIYGEKFPDENFK KHTGPG+LSMANAGP+TNGSQFF+ TV T+WLDG+HVVFG+V+ G+D+V KVE  G  +GTPKS+ ++AD G+
Sbjct:    5 RVFFDITIAGKPTGRIVMELYNDIVPKTAENFRALCTGEKGVGKSGKPLHFKGSKFHRIIPEFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTAWLDGKHVVFGRVVEGLDIVSKVEGNGSSSGTPKSECLIADCGQ 170          
BLAST of CK939408 vs. ExPASy Swiss-Prot
Match: PPIB_DICDI (Peptidyl-prolyl cis-trans isomerase B OS=Dictyostelium discoideum GN=cypB PE=1 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 3.352e-64
Identity = 121/191 (63.35%), Postives = 144/191 (75.39%), Query Frame = 1
Query:  112 AIVLLATFSSIQAKKSDQNLKEITNKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGE 684
            AIVL+  ++       D    +ITNKV+FD+EI  KPAGRIV GL+GK VPKT ENFRALCTGEKG+G SGKPLHYK S FHRIIP+FM+Q            ESIYG+KF DENFK+KH+ PGLLSMANAGP+TNGSQFFITTV TSWLDGRH VFG+V+ GMD+V  +E+ G Q+GTP     +++SGE
Sbjct:    9 AIVLVTLWAMPSEAGKDP---KITNKVFFDIEIDNKPAGRIVFGLYGKTVPKTVENFRALCTGEKGLGTSGKPLHYKDSKFHRIIPNFMIQGGDFTRGDGTGGESIYGKKFNDENFKIKHSKPGLLSMANAGPNTNGSQFFITTVVTSWLDGRHTVFGEVIEGMDIVKLLESIGSQSGTPSKIAKISNSGE 196          
BLAST of CK939408 vs. ExPASy Swiss-Prot
Match: CYP3_CAEEL (Peptidyl-prolyl cis-trans isomerase 3 OS=Caenorhabditis elegans GN=cyn-3 PE=1 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 1.722e-60
Identity = 110/167 (65.87%), Postives = 130/167 (77.84%), Query Frame = 1
Query:  184 NKVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGE 684
            +KV+FD+ I GK +GRIVM L+   VPKTA NFRALCTGE GIGKSGKPLH+KGS FHRIIP+FM+Q            ESIYGEKFPDENFK KHTGPG+LSMANAGP+TNGSQFF+ TV T WLDG+HVVFG+V+ G+DVV  VE+ G Q+G P    ++AD G+
Sbjct:    4 SKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNGSQSGKPVKDCMIADCGQ 170          
BLAST of CK939408 vs. ExPASy Swiss-Prot
Match: CYP2_CAEEL (Peptidyl-prolyl cis-trans isomerase 2 OS=Caenorhabditis elegans GN=cyn-2 PE=2 SV=2)

HSP 1 Score: 226.868 bits (577), Expect = 1.234e-58
Identity = 108/166 (65.06%), Postives = 127/166 (76.51%), Query Frame = 1
Query:  187 KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGE 684
            KV+FD+ I GK  GRIVM L+   VPKTAENFRALCTGEKG GKSGK LH+KGS FHRIIP FM+Q            ESI+GEKF DENFK KHTGPG+LSMAN G +TNGSQFF+ TV T+WLDG+HVVFGKV+ GMDVV  +E++G ++G P +  V+AD GE
Sbjct:    5 KVFFDITIGGKKGGRIVMELYNDIVPKTAENFRALCTGEKGKGKSGKKLHFKGSKFHRIIPEFMIQGGDFTEGNGTGGESIHGEKFDDENFKEKHTGPGVLSMANCGANTNGSQFFLCTVKTTWLDGKHVVFGKVIEGMDVVKAIESKGSEDGAPSAPCVIADCGE 170          
BLAST of CK939408 vs. ExPASy Swiss-Prot
Match: CYPH_SOLLC (Peptidyl-prolyl cis-trans isomerase OS=Solanum lycopersicum GN=CYP PE=2 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 2.104e-58
Identity = 108/166 (65.06%), Postives = 122/166 (73.49%), Query Frame = 1
Query:  187 KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGE 684
            KV+FD+ I G PAGR+VM LF    PKTAENFRALCTGEKG+GK GKPLHYKGSTFHR+IP FM Q            ESIYG KF DENF  KHTGPG+LSMANAGP TNGSQFFI T  T WL+G+HVVFG+V+ GMDV+ K EA G  +G     VV+AD G+
Sbjct:    5 KVFFDLTIGGAPAGRVVMELFADTTPKTAENFRALCTGEKGVGKMGKPLHYKGSTFHRVIPGFMCQGGDFTAGNGTGGESIYGAKFNDENFVKKHTGPGILSMANAGPGTNGSQFFICTAKTEWLNGKHVVFGQVVEGMDVIKKAEAVGSSSGRCSKPVVIADCGQ 170          
BLAST of CK939408 vs. ExPASy Swiss-Prot
Match: CYPH_MAIZE (Peptidyl-prolyl cis-trans isomerase OS=Zea mays GN=CYP PE=2 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 2.749e-58
Identity = 108/166 (65.06%), Postives = 124/166 (74.70%), Query Frame = 1
Query:  187 KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGE 684
            +V+FD+ + G PAGRIVM L+   VPKTAENFRALCTGEKG+GKSGKPLHYKGSTFHR+IP FM Q            ESIYGEKFPDE F  K   PG+LSMANAGP+TNGSQFFI TV T WLDG+HVVFG+V+ GMDVV  +E  G +NG+    V VAD G+
Sbjct:    5 RVFFDMTVGGAPAGRIVMELYANEVPKTAENFRALCTGEKGVGKSGKPLHYKGSTFHRVIPEFMCQGGDFTRGNGTGGESIYGEKFPDEKFVRKQPAPGVLSMANAGPNTNGSQFFICTVATPWLDGKHVVFGQVVEGMDVVKAIEKVGTRNGSTSKVVKVADCGQ 170          
BLAST of CK939408 vs. ExPASy Swiss-Prot
Match: CP19B_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-2 OS=Arabidopsis thaliana GN=CYP19-2 PE=1 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 7.997e-58
Identity = 106/166 (63.86%), Postives = 126/166 (75.90%), Query Frame = 1
Query:  187 KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGE 684
            KV+FD+ I G PAG+IVM L+    PKTAENFRALCTGEKG+G+SGKPLH+KGS+FHR+IP+FM Q            ESIYG KF DENF+ KHTGPG+LSMANAG +TNGSQFFI TV T WLDG+HVVFG+V+ G+DVV  +E  G  +G P   VV+AD GE
Sbjct:    6 KVFFDMTIGGAPAGKIVMELYTDKTPKTAENFRALCTGEKGVGRSGKPLHFKGSSFHRVIPNFMCQGGDFTKGNGTGGESIYGAKFEDENFERKHTGPGILSMANAGANTNGSQFFICTVKTDWLDGKHVVFGQVVEGLDVVKAIEKIGSSSGKPTKPVVIADCGE 171          
BLAST of CK939408 vs. ExPASy Swiss-Prot
Match: CP18C_ARATH (Peptidyl-prolyl cis-trans isomerase CYP18-3 OS=Arabidopsis thaliana GN=CYP18-3 PE=1 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 3.039e-57
Identity = 106/166 (63.86%), Postives = 125/166 (75.30%), Query Frame = 1
Query:  187 KVYFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKVEAEGRQNGTPKSKVVVADSGE 684
            KVYFD+ I G+PAGRIVM L+    P+TAENFRALCTGEKG+G +GKPLH+KGS FHR+IP+FM Q            ESIYG KF DENF+ KHTGPG+LSMANAG +TNGSQFFI TV T WLDG+HVVFG+V+ G+DVV  +E  G  +G P   VVVAD G+
Sbjct:    5 KVYFDMTIDGQPAGRIVMELYTDKTPRTAENFRALCTGEKGVGGTGKPLHFKGSKFHRVIPNFMCQGGDFTAGNGTGGESIYGSKFEDENFERKHTGPGILSMANAGANTNGSQFFICTVKTDWLDGKHVVFGQVVEGLDVVKAIEKVGSSSGKPTKPVVVADCGQ 170          
The following BLAST results are available for this feature:
BLAST of CK939408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 223
Match NameE-valueIdentityDescription
CP20A_ARATH3.116e-8680.41Peptidyl-prolyl cis-trans isomerase CYP20-1 OS=Ara... [more]
CP19D_ARATH2.311e-8173.53Peptidyl-prolyl cis-trans isomerase CYP19-4 OS=Ara... [more]
CYP7_CAEEL1.152e-6468.67Peptidyl-prolyl cis-trans isomerase 7 OS=Caenorhab... [more]
PPIB_DICDI3.352e-6463.35Peptidyl-prolyl cis-trans isomerase B OS=Dictyoste... [more]
CYP3_CAEEL1.722e-6065.87Peptidyl-prolyl cis-trans isomerase 3 OS=Caenorhab... [more]
CYP2_CAEEL1.234e-5865.06Peptidyl-prolyl cis-trans isomerase 2 OS=Caenorhab... [more]
CYPH_SOLLC2.104e-5865.06Peptidyl-prolyl cis-trans isomerase OS=Solanum lyc... [more]
CYPH_MAIZE2.749e-5865.06Peptidyl-prolyl cis-trans isomerase OS=Zea mays GN... [more]
CP19B_ARATH7.997e-5863.86Peptidyl-prolyl cis-trans isomerase CYP19-2 OS=Ara... [more]
CP18C_ARATH3.039e-5763.86Peptidyl-prolyl cis-trans isomerase CYP18-3 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004751_A11 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IIIF_A11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939408 ID=CK939408; Name=CK939408; organism=Citrus sinensis; type=EST; length=889bp
GGGGGTCCGCAGTCTGCACTAAGCGGAACCCCAAAGTGAGTGACTGCGAA
ACGAGAAACAACGAAGTGATACATGGCTTCGACAAAATTTCTTCCACTCA
CGATGCTATGGGCTATTGTCCTGTTGGCCACTTTCTCTTCAATTCAGGCG
AAGAAATCGGATCAGAATTTGAAAGAAATCACAAACAAAGTTTACTTTGA
CGTTGAGATTGCTGGAAAACCTGCCGGACGTATTGTAATGGGTCTCTTTG
GAAAGGCAGTCCCTAAAACTGCAGAAAATTTCCGAGCTTTGTGCACAGGG
GAGAAAGGGATTGGCAAGAGCGGGAAGCCACTCCACTACAAGGGAAGTAC
GTTCCATAGGATTATTCCCAGCTTTATGCTTCAAGGAGGTGATTTCACTC
TTGGTGATGGAAGAGGTGGAGAGTCAATTTATGGAGAGAAGTTCCCTGAC
GAAAATTTCAAACTGAAGCACACTGGCCCAGGGCTTTTGTCAATGGCAAA
TGCTGGTCCAGACACCAATGGTTCACAATTCTTCATTACAACTGTGACAA
CTAGCTGGTTGGATGGCAGGCATGTTGTATTTGGAAAGGTGCTATCGGGG
ATGGATGTAGTTTACAAGGTTGAAGCTGAAGGGAGGCAGAATGGCACTCC
GAAGAGCAAAGTCGTCGTTGCAGACAGCGGTGAACTTCCTCTGTGATTTC
CCCCATAATTATATAATTACGCTATACACCTTTTTAGTCCTCTCGTCTTT
TCAACCTTCATGAAGATACTCATAATTTGCCTATTTATCATGTAATAGAC
ATTTTAAAATGTCCTAGGTTGTTTGCCAAGCTGGTGCTTCATTTTAAGGG
GATCCTTTTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAA
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