CK939407

Overview
NameCK939407
Unique NameCK939407
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_CITSI (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Citrus sinensis GN=ndhA PE=3 SV=1)

HSP 1 Score: 349.362 bits (895), Expect = 1.639e-95
Identity = 183/184 (99.46%), Postives = 183/184 (99.46%), Query Frame = 3 
Query:   72 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSY VIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL
Sbjct:    1 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 184
[Close]
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_PELHO (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Pelargonium hortorum GN=ndhA PE=3 SV=1)

HSP 1 Score: 316.62 bits (810), Expect = 1.177e-85
Identity = 162/184 (88.04%), Postives = 171/184 (92.93%), Query Frame = 3 
Query:   72 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            MII TPEVQDINSFSR ESLQE+YGI+W+L PI   V+ ITIGVLVIVWLEREISAGIQQRIGPEYA P GILQALADGTKLL KENLLPSRG+S LFSIGPS+AVI+ILLSY VIPFSY LVLADLN+G+FLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL
Sbjct:    1 MIIDTPEVQDINSFSRFESLQEIYGIVWMLVPILTLVVGITIGVLVIVWLEREISAGIQQRIGPEYAGPFGILQALADGTKLLLKENLLPSRGDSPLFSIGPSMAVISILLSYSVIPFSYRLVLADLNVGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 184
[Close]
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_VITVI (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Vitis vinifera GN=ndhA PE=3 SV=1)

HSP 1 Score: 316.235 bits (809), Expect = 1.538e-85
Identity = 163/184 (88.59%), Postives = 172/184 (93.48%), Query Frame = 3 
Query:   72 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            MII TPEVQDINSFSRLE L+EVYGI+W+L PI   VL ITIGVL IVWLEREISAGIQQRIGPEYA PLGILQALADGTKLLFKENLLPSRG++ LFSIGPSIAVI+ILLSYL+IPF  NLVL+DLNIG+FLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL
Sbjct:    1 MIIDTPEVQDINSFSRLEYLKEVYGIIWMLVPIFTPVLGITIGVLAIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKENLLPSRGDTRLFSIGPSIAVISILLSYLIIPFGSNLVLSDLNIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 184
[Close]
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_HELAN (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Helianthus annuus GN=ndhA PE=3 SV=1)

HSP 1 Score: 315.079 bits (806), Expect = 3.426e-85
Identity = 164/184 (89.13%), Postives = 172/184 (93.48%), Query Frame = 3 
Query:   72 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            MII T EVQ INSFSRLESL+EVYGI+WVL PI   VL ITIGVLVIVWLEREISAGIQQRIGPEYA PLGILQALADGTKLLFKENLLPSRG++ LFSIGPSIAVI+ILLSYLVIPF Y LVLADL+IG+FLWIAISSIAP+GLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL
Sbjct:    1 MIIDTTEVQAINSFSRLESLKEVYGIIWVLIPIFTPVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKENLLPSRGDTRLFSIGPSIAVISILLSYLVIPFGYRLVLADLSIGVFLWIAISSIAPVGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 184
[Close]
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_LACSA (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Lactuca sativa GN=ndhA PE=3 SV=1)

HSP 1 Score: 313.538 bits (802), Expect = 9.967e-85
Identity = 163/184 (88.59%), Postives = 173/184 (94.02%), Query Frame = 3 
Query:   72 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            MII T EVQ INSFS LESL+EVYGI+W+L PI   VL ITIGVLVIVWLEREISAGIQQRIGPEYA PLGILQALADGTKLLFKENLLPSRG++ LFSIGPSIAVI+ILLSYLVIPFSY+LVLADL+IG+FLWIAISSIAP+GLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL
Sbjct:    1 MIIDTTEVQAINSFSILESLKEVYGIIWMLIPIFTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKENLLPSRGDTRLFSIGPSIAVISILLSYLVIPFSYHLVLADLSIGVFLWIAISSIAPVGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 184
[Close]
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_LOTJA (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Lotus japonicus GN=ndhA PE=3 SV=1)

HSP 1 Score: 313.153 bits (801), Expect = 1.302e-84
Identity = 159/184 (86.41%), Postives = 171/184 (92.93%), Query Frame = 3 
Query:   72 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            MII T EVQDINSFSRLES +EVYG+LWVLAPI I VL ITI VL IVWLEREISAG+QQRIGPEYA P G+LQALADGTKLLFKENL+PSRG+  LFSIGPSI+VI+IL++YLVIPFSYN VL+DLNIG+FLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL
Sbjct:    1 MIIDTTEVQDINSFSRLESFKEVYGVLWVLAPILIIVLGITISVLAIVWLEREISAGMQQRIGPEYAGPFGVLQALADGTKLLFKENLIPSRGDIRLFSIGPSISVISILITYLVIPFSYNFVLSDLNIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 184
[Close]
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_PANGI (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Panax ginseng GN=ndhA PE=3 SV=1)

HSP 1 Score: 309.686 bits (792), Expect = 1.439e-83
Identity = 160/184 (86.96%), Postives = 171/184 (92.93%), Query Frame = 3 
Query:   72 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            MII T EVQ INSF RLESL+EVYGI+W+L PI   VL ITIGVLVIVWLEREISAGIQQRIGPEYA PLGILQALADGTKLLFKENLLPSRG++ LFSIGPS+AV +ILLSYLVIPF Y+LVLADL+IG+FLWIAISSIAP+GLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL
Sbjct:    1 MIIDTTEVQAINSFFRLESLKEVYGIIWMLIPIFTPVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKENLLPSRGDTRLFSIGPSVAVTSILLSYLVIPFGYHLVLADLSIGVFLWIAISSIAPVGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 184
[Close]
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_GOSHI (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Gossypium hirsutum GN=ndhA PE=3 SV=1)

HSP 1 Score: 308.531 bits (789), Expect = 3.206e-83
Identity = 159/184 (86.41%), Postives = 170/184 (92.39%), Query Frame = 3 
Query:   72 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            MII T EV+DINSF  LESL+EVYGI+W+L PI   VL ITIGVLVIVWLEREISAGIQQRIGPEYA PLGILQALADGTKLLFKEN+LPSRGN+ LFSIGP+IAVI+ILLS+ VIPFS  L+LADLNIGIFLWIAISSIAP+GLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL
Sbjct:    1 MIIYTTEVEDINSFYTLESLKEVYGIIWMLVPILTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKENILPSRGNTRLFSIGPAIAVISILLSFSVIPFSSRLILADLNIGIFLWIAISSIAPVGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 184
[Close]
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_CUCSA (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Cucumis sativus GN=ndhA PE=3 SV=1)

HSP 1 Score: 308.531 bits (789), Expect = 3.206e-83
Identity = 160/184 (86.96%), Postives = 169/184 (91.85%), Query Frame = 3 
Query:   72 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            MII T +VQDI+SFSRLE L+E YGILWVL PI   VL ITIGVLVIVWLEREISAGIQQRIGPEYA PLG+LQALADGTKLLFKENLLPSRG++ LFSIGPSIAVI+ILLSY VIPF Y LVLADL IG+FLWIAISS+APIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL
Sbjct:    1 MIIDTSQVQDIHSFSRLEFLKEFYGILWVLVPILTTVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGVLQALADGTKLLFKENLLPSRGDTRLFSIGPSIAVISILLSYSVIPFGYRLVLADLPIGVFLWIAISSVAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 184
[Close]
BLAST of CK939407 vs. ExPASy Swiss-Prot
Match: NU1C_COFAR (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Coffea arabica GN=ndhA PE=3 SV=1)

HSP 1 Score: 308.531 bits (789), Expect = 3.206e-83
Identity = 160/184 (86.96%), Postives = 169/184 (91.85%), Query Frame = 3 
Query:   72 MIIATPEVQDINSFSRLESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYLVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 623
            MII T E+Q INSF +LESL+EVYGI+W+L PI   VL ITIGVLVIVWLEREISAGIQQRIGPEYA PLGILQALADGTKLLFKENLLPSRG++ LFSIGPSIAVI+ILLSY VIPF Y LVLADL IG+FLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL
Sbjct:    1 MIIDTTELQAINSFFKLESLKEVYGIIWILIPIFTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKENLLPSRGDARLFSIGPSIAVISILLSYSVIPFGYRLVLADLTIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 184
The following BLAST results are available for this feature:
BLAST of CK939407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NU1C_CITSI1.639e-9599.46NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_PELHO1.177e-8588.04NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_VITVI1.538e-8588.59NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_HELAN3.426e-8589.13NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_LACSA9.967e-8588.59NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_LOTJA1.302e-8486.41NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_PANGI1.439e-8386.96NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_GOSHI3.206e-8386.41NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_CUCSA3.206e-8386.96NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_COFAR3.206e-8386.96NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004751_A10 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IIIF_A10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939407 ID=CK939407; Name=CK939407; organism=Citrus sinensis; type=EST; length=887bp
GGGAAAATTGGCTGATATTATGACGATATTAGGTAGTATAGATATCATTA
TGGGGGAAGTTGATCGTTGAAATGATAATTGCTACACCCGAAGTACAAGA
TATCAATTCTTTTTCCCGATTGGAATCCCTACAAGAGGTCTATGGGATCC
TATGGGTGCTTGCCCCTATTTCGATTTATGTATTGGCAATCACAATCGGT
GTCCTAGTAATTGTGTGGTTAGAAAGAGAAATATCTGCAGGAATACAACA
GCGTATTGGGCCTGAATACGCCAGCCCTTTGGGAATTCTTCAAGCTTTAG
CCGATGGGACAAAACTCCTTTTCAAAGAAAACCTTCTTCCATCTAGAGGA
AATAGTAGTTTATTTAGTATTGGTCCATCTATAGCAGTCATAGCAATTCT
ACTAAGTTATTTAGTAATTCCTTTTAGTTATAACCTTGTTTTAGCTGACC
TCAATATCGGTATTTTTTTATGGATTGCCATTTCAAGTATTGCCCCTATT
GGACTTCTTATGTCAGGATATGGATCAAATAATAAATATTCCTTTTTAGG
TGGTCTGCGAGCTGCTGCTCAATCGATTAGTTATGAAATACCATTAACTT
TATGTGTTTTATCAATATCTCTACGTGTGATTCGCTAAAACCTAAGCTTT
TCGTTCTAGAAAAAAAAAGAACTTGAATAGAAATCCTCATTTTTTTATTC
ATTTATTGACTCTTTAGGTTAATAAAAGAAATTAGATAGTTATATATGAG
TGAAAGAAAACACCTTCGAAATTCGCAGTAAACGTGGATTAAGTCTCATT
TCCTATGTACAAGCGTTAAGGATAAGTAAACAAAAGTAAAAGTGGAGGAA
GCCCTTNACCCAAGACAGGTCGATTGATCATCCTAGC
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