CK939405

Overview
NameCK939405
Unique NameCK939405
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length884
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7428 contig Csv1_Contig7428:128..1011. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK939405 vs. ExPASy Swiss-Prot
Match: ADF_VITVI (Actin-depolymerizing factor OS=Vitis vinifera PE=2 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 1.179e-61
Identity = 117/146 (80.14%), Postives = 127/146 (86.99%), Query Frame = 2
Query:  122 MSFRGLSRPNATSGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLGELRNRAN 559
            MSFRGL   NA+SGMGVADHSKN F EL+RKKVHRYVIFKID          TGGPAES+++FAAALPENDCRYAVYDFD+VTSENCQKSKIFFIAWSP +SRIRAKMLYATSK+RFRRELDG+HYEIQATDPTEMDL  LR RA+
Sbjct:    1 MSFRGL---NASSGMGVADHSKNTFLELKRKKVHRYVIFKIDEKKKEVVVEKTGGPAESFDEFAAALPENDCRYAVYDFDFVTSENCQKSKIFFIAWSPDSSRIRAKMLYATSKERFRRELDGVHYEIQATDPTEMDLEVLRERAH 143          
BLAST of CK939405 vs. ExPASy Swiss-Prot
Match: ADF6_ARATH (Actin-depolymerizing factor 6 OS=Arabidopsis thaliana GN=ADF6 PE=1 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 1.220e-58
Identity = 110/146 (75.34%), Postives = 119/146 (81.51%), Query Frame = 2
Query:  122 MSFRGLSRPNATSGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLGELRNRAN 559
            MSFRGLSRPNA SGMGVAD SK  F ELQRKK HRYV+FKID          TG P ESY+DF A+LP+NDCRYAVYDFD+VTSENCQKSKIFF AWSPSTS IRAK+LY+TSKD+  REL GIHYEIQATDPTE+DL  LR RAN
Sbjct:    1 MSFRGLSRPNAISGMGVADESKTTFLELQRKKTHRYVVFKIDESKKEVVVEKTGNPTESYDDFLASLPDNDCRYAVYDFDFVTSENCQKSKIFFFAWSPSTSGIRAKVLYSTSKDQLSRELQGIHYEIQATDPTEVDLEVLRERAN 146          
BLAST of CK939405 vs. ExPASy Swiss-Prot
Match: ADF11_ORYSJ (Actin-depolymerizing factor 11 OS=Oryza sativa subsp. japonica GN=ADF11 PE=2 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.445e-51
Identity = 97/140 (69.29%), Postives = 112/140 (80.00%), Query Frame = 2
Query:  140 SRPNATSGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLGELRNRAN 559
            SR NA+SG+GVA   K  F ELQRKK HRYVIFKID          TG   ES++DF  +LPE+DCRYA+YDFD+VT ENCQKSKIFF+AWSPS SRIRAKMLYATSK+RFRRELDG+HYEIQATDP+E+D+  LR RA+
Sbjct:    6 SRANASSGIGVAAECKQTFLELQRKKSHRYVIFKIDDKCKEVVVEKTGSSTESFDDFMDSLPESDCRYAIYDFDFVTEENCQKSKIFFVAWSPSVSRIRAKMLYATSKERFRRELDGVHYEIQATDPSELDIELLRERAH 145          
BLAST of CK939405 vs. ExPASy Swiss-Prot
Match: ADF2_ORYSJ (Actin-depolymerizing factor 2 OS=Oryza sativa subsp. japonica GN=ADF2 PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 3.934e-49
Identity = 96/140 (68.57%), Postives = 109/140 (77.86%), Query Frame = 2
Query:  140 SRPNATSGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLGELRNRAN 559
            S  NA+SGMGVA   ++ F ELQ KK  RYVIFKI+          TG   ESY+DF A+LPENDCRYA+YDFD+VT EN QKSKIFFIAWSPSTSRIRAKMLY+TSKDR ++ELDG HYEIQATDPTE+DL  LR RA+
Sbjct:    6 SHSNASSGMGVAPDIRDTFLELQMKKAFRYVIFKIEEKQKQVVVEKTGATTESYDDFLASLPENDCRYALYDFDFVTGENVQKSKIFFIAWSPSTSRIRAKMLYSTSKDRIKQELDGFHYEIQATDPTEVDLEVLRERAH 145          
BLAST of CK939405 vs. ExPASy Swiss-Prot
Match: ADF1_PETHY (Actin-depolymerizing factor 1 OS=Petunia hybrida GN=ADF1 PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 2.639e-45
Identity = 84/137 (61.31%), Postives = 106/137 (77.37%), Query Frame = 2
Query:  149 NATSGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLGELRNRAN 559
            NA SGM V D  K  F EL+ K+ HR++++KI+           G P ESYEDFAA+LPEN+CRYAVYDFD+VT+ENCQKS+IFFIAW P T+R+R+KM+YA+SKDRF+RELDGI  E+QA DPTEM L  +++RAN
Sbjct:    3 NAASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKIGEPTESYEDFAASLPENECRYAVYDFDFVTAENCQKSRIFFIAWCPDTARVRSKMIYASSKDRFKRELDGIQVELQACDPTEMGLDVIQSRAN 139          
BLAST of CK939405 vs. ExPASy Swiss-Prot
Match: ADF10_ORYSJ (Actin-depolymerizing factor 10 OS=Oryza sativa subsp. japonica GN=ADF10 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 1.003e-44
Identity = 84/130 (64.62%), Postives = 103/130 (79.23%), Query Frame = 2
Query:  170 VADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLGELRNRAN 559
            V + SK+AF EL+R+KVHRYVIFKID          TG P ESY+DF A+LP +DCRYAVYD D+V+ +NC+KSKIFFI+WSPS SRIRAK +YA S+++FR ELDG+H+EIQATDP +MDL  LR RAN
Sbjct:   20 VPEKSKSAFWELKRRKVHRYVIFKIDDRREEIVVEKTGAPGESYDDFTASLPADDCRYAVYDLDFVSDDNCRKSKIFFISWSPSVSRIRAKTIYAVSRNQFRHELDGVHFEIQATDPDDMDLEVLRGRAN 149          
BLAST of CK939405 vs. ExPASy Swiss-Prot
Match: ADF7_ORYSJ (Actin-depolymerizing factor 7 OS=Oryza sativa subsp. japonica GN=ADF7 PE=3 SV=2)

HSP 1 Score: 177.948 bits (450), Expect = 6.499e-44
Identity = 82/137 (59.85%), Postives = 104/137 (75.91%), Query Frame = 2
Query:  149 NATSGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLGELRNRAN 559
            NA SGM V D  K  F EL+ K+ +R++I+KID           G P  +Y+DFAA+LP N+CRYA++D+D+VT ENCQKSKIFFIAWSP TSR+R+KM+YA+SKDRF+RELDGI  E+QATDPTE+ L  +R RAN
Sbjct:    3 NAASGMAVDDECKLKFLELKAKRTYRFIIYKIDEKKKMVVVEKVGEPVLNYDDFAASLPANECRYAIFDYDFVTEENCQKSKIFFIAWSPDTSRVRSKMIYASSKDRFKRELDGIQVELQATDPTEVGLDVIRGRAN 139          
BLAST of CK939405 vs. ExPASy Swiss-Prot
Match: ADF1_ARATH (Actin-depolymerizing factor 1 OS=Arabidopsis thaliana GN=ADF1 PE=1 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.109e-43
Identity = 80/137 (58.39%), Postives = 104/137 (75.91%), Query Frame = 2
Query:  149 NATSGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLGELRNRAN 559
            NA SGM V D  K  F EL+ K+ HR++++KI+           G P ++YE+FAA LP ++CRYA+YDFD+VT+ENCQKSKIFFIAW P  +++R+KM+YA+SKDRF+RELDGI  E+QATDPTEMDL   R+RAN
Sbjct:    3 NAASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAACLPADECRYAIYDFDFVTAENCQKSKIFFIAWCPDIAKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMDLDVFRSRAN 139          
BLAST of CK939405 vs. ExPASy Swiss-Prot
Match: ADF4_ARATH (Actin-depolymerizing factor 4 OS=Arabidopsis thaliana GN=ADF4 PE=2 SV=2)

HSP 1 Score: 176.407 bits (446), Expect = 1.891e-43
Identity = 80/137 (58.39%), Postives = 104/137 (75.91%), Query Frame = 2
Query:  149 NATSGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLGELRNRAN 559
            NA SGM V D  K  F EL+ K+ HR++++KI+           G P  +YEDFAA+LP ++CRYA+YDFD+VT+ENCQKSKIFFIAW P  +++R+KM+YA+SKDRF+RELDGI  E+QATDPTEMDL  L++R N
Sbjct:    3 NAASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVIVEKVGEPILTYEDFAASLPADECRYAIYDFDFVTAENCQKSKIFFIAWCPDVAKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMDLDVLKSRVN 139          
BLAST of CK939405 vs. ExPASy Swiss-Prot
Match: ADF10_ARATH (Actin-depolymerizing factor 10 OS=Arabidopsis thaliana GN=ADF10 PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 4.213e-43
Identity = 80/137 (58.39%), Postives = 103/137 (75.18%), Query Frame = 2
Query:  149 NATSGMGVADHSKNAFTELQRKKVHRYVIFKIDXXXXXXXXXXTGGPAESYEDFAAALPENDCRYAVYDFDYVTSENCQKSKIFFIAWSPSTSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTEMDLGELRNRAN 559
            N+ SGM V+D  K  F EL+ K+ +R+++FKID           G P E+YEDF  ++PE++CRYAVYD+D+ T ENCQKSKIFFIAWSP TSR+R+KMLYA+SKDRF+RELDGI  E+QATDP+EM L  ++ R N
Sbjct:    3 NSASGMHVSDECKLKFLELKAKRNYRFIVFKIDEKAQQVMIDKLGNPEETYEDFTRSIPEDECRYAVYDYDFTTPENCQKSKIFFIAWSPDTSRVRSKMLYASSKDRFKRELDGIQVELQATDPSEMSLDIIKGRVN 139          
The following BLAST results are available for this feature:
BLAST of CK939405 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
ADF_VITVI1.179e-6180.14Actin-depolymerizing factor OS=Vitis vinifera PE=2... [more]
ADF6_ARATH1.220e-5875.34Actin-depolymerizing factor 6 OS=Arabidopsis thali... [more]
ADF11_ORYSJ1.445e-5169.29Actin-depolymerizing factor 11 OS=Oryza sativa sub... [more]
ADF2_ORYSJ3.934e-4968.57Actin-depolymerizing factor 2 OS=Oryza sativa subs... [more]
ADF1_PETHY2.639e-4561.31Actin-depolymerizing factor 1 OS=Petunia hybrida G... [more]
ADF10_ORYSJ1.003e-4464.62Actin-depolymerizing factor 10 OS=Oryza sativa sub... [more]
ADF7_ORYSJ6.499e-4459.85Actin-depolymerizing factor 7 OS=Oryza sativa subs... [more]
ADF1_ARATH1.109e-4358.39Actin-depolymerizing factor 1 OS=Arabidopsis thali... [more]
ADF4_ARATH1.891e-4358.39Actin-depolymerizing factor 4 OS=Arabidopsis thali... [more]
ADF10_ARATH4.213e-4358.39Actin-depolymerizing factor 10 OS=Arabidopsis thal... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004751_A08 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IIIF_A08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939405 ID=CK939405; Name=CK939405; organism=Citrus sinensis; type=EST; length=884bp
GGGGATTACGTATAAAACTAGGCCACTTCTTTTAGTTTTATTCTGAGCAC
AATACATTTTCGCTCTCTTTCATTGTTTATTTACTTGCTCTGGTGATCTG
CGTTCTGTTGCTGCCGCCGCCATGTCTTTCAGAGGACTAAGTCGACCAAA
TGCCACTTCTGGCATGGGCGTTGCTGATCACAGCAAAAATGCATTCACGG
AATTGCAAAGGAAGAAGGTTCACCGTTATGTGATTTTTAAGATTGATGAG
AAGAAAAAGGAGGTTGTGGTTGAGAAGACTGGTGGCCCCGCTGAGAGCTA
CGAGGATTTCGCTGCTGCTTTGCCTGAGAATGATTGTCGATATGCTGTAT
ATGACTTTGACTATGTGACTTCTGAGAATTGTCAGAAGAGCAAGATATTC
TTCATTGCATGGTCCCCTTCAACCTCTAGAATCCGTGCCAAGATGCTGTA
CGCCACATCTAAAGACAGATTTCGACGGGAGCTGGATGGTATCCACTATG
AGATTCAGGCTACTGATCCTACAGAGATGGATCTTGGAGAGCTTAGAAAC
CGTGCAAACTGAAGAGTCTGCAGTTTTGCAGTTTCTTCCTTCCATGAAAA
AAAAATCAGCAAGGGGTTCTGCCAACTGTTGCTCCTTGCTTCATTAATCT
ATGTGCAAAAATCTATGCGTAATCTTCGAATAACTGGCAATGTGGGAAGA
CTGATTGGGCTGAGGTTATCTTGTTGTGGTGAAATTAGCTTCCCAGTGGT
TTATTGCTACTCTGATGAATATAAGTTTGTTTGTTGGGTATTTGGAAATC
CTAGAACATATTATCGTAACATTGATCTCTAATTCATATTCGCTGTCCTT
GTACTTCCTCCTTGATTTTATTTTCTATAATGTG
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