CX675672

Overview
NameCX675672
Unique NameCX675672
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length807
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX675672_ssr280 microsatellite CX675672_ssr280:280..303. BLAST: Citrus ESTs to Prunus persica proteins V1
CX675672_ssr306 microsatellite CX675672_ssr306:306..315. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX675672 vs. ExPASy Swiss-Prot
Match: ILL4_ORYSJ (IAA-amino acid hydrolase ILR1-like 4 OS=Oryza sativa subsp. japonica GN=ILL4 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.075e-22
Identity = 49/76 (64.47%), Postives = 61/76 (80.26%), Query Frame = 1
Query:  517 QVIEMQAAVHQCSATIDFMEEKMRHYPATVNDEKMYEHGKRVGASMVGEPNVHLTPVEMGAEDFSFYTQRMPAAHF 744
            +VIE QAAV++C+A +DFME+K+R YPATVNDE MY H K V  SM+GE NV ++P+ MGAEDF FY QR+PAA F
Sbjct:  281 EVIEGQAAVNRCTAAVDFMEDKLRPYPATVNDEGMYAHAKAVAESMLGEANVTVSPMCMGAEDFGFYAQRIPAAFF 356          
BLAST of CX675672 vs. ExPASy Swiss-Prot
Match: ILL3_ORYSJ (IAA-amino acid hydrolase ILR1-like 3 OS=Oryza sativa subsp. japonica GN=ILL3 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 7.935e-22
Identity = 49/76 (64.47%), Postives = 60/76 (78.95%), Query Frame = 1
Query:  517 QVIEMQAAVHQCSATIDFMEEKMRHYPATVNDEKMYEHGKRVGASMVGEPNVHLTPVEMGAEDFSFYTQRMPAAHF 744
            +VIE QAAV++C+A +DFME+K+  YPATVNDE+MY H K V  SM+GE NV L+P  MGAEDF FY QR+PAA F
Sbjct:  286 EVIEGQAAVNRCTAAVDFMEDKLPPYPATVNDEEMYAHAKAVAESMLGEANVKLSPQGMGAEDFGFYAQRIPAAFF 361          
BLAST of CX675672 vs. ExPASy Swiss-Prot
Match: ILL8_ORYSJ (IAA-amino acid hydrolase ILR1-like 8 OS=Oryza sativa subsp. japonica GN=ILL8 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.287e-19
Identity = 46/107 (42.99%), Postives = 68/107 (63.55%), Query Frame = 1
Query:  430 SNIRGTFTPLTEENCLNSN*GHRNSTYCYQVIEMQAAVHQCSATIDFMEEKMRHYPATVNDEKMYEHGKRVGASMVGEPNVHLTPVEMGAEDFSFYTQRMPAAHFYV 750
            +++ GTF  +T+E         R      ++IE QA V++C+A +DF+EE++R YPATVND+ MY H K V  +M+GE NV +    MG EDF+FY +R P A F++
Sbjct:  294 ASLGGTFRSMTDEGLAYLMKRIR------EIIEAQAGVNRCAAAVDFLEEELRPYPATVNDDGMYGHAKAVAEAMLGEANVRVAARSMGGEDFAFYARRSPGAFFFI 394          
BLAST of CX675672 vs. ExPASy Swiss-Prot
Match: ILL7_ORYSJ (IAA-amino acid hydrolase ILR1-like 7 OS=Oryza sativa subsp. japonica GN=ILL7 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.186e-17
Identity = 40/78 (51.28%), Postives = 54/78 (69.23%), Query Frame = 1
Query:  517 QVIEMQAAVHQCSATIDFMEEKMRHYPATVNDEKMYEHGKRVGASMVGEPNVHLTPVEMGAEDFSFYTQRMPAAHFYV 750
            +++E  A VH+C+AT+DFMEE+   YPATVNDE MY H + V   ++GE  V +    MG+EDF+FY QR PAA F +
Sbjct:  328 EIVEAHATVHRCTATVDFMEEERIPYPATVNDEGMYRHARAVAVDVLGEDGVKVGTPFMGSEDFAFYAQRFPAAFFMI 405          
BLAST of CX675672 vs. ExPASy Swiss-Prot
Match: ILL9_ORYSJ (IAA-amino acid hydrolase ILR1-like 9 OS=Oryza sativa subsp. japonica GN=ILL9 PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 2.236e-16
Identity = 39/78 (50.00%), Postives = 51/78 (65.38%), Query Frame = 1
Query:  517 QVIEMQAAVHQCSATIDFMEEKMRHYPATVNDEKMYEHGKRVGASMVGEPNVHLTPVEMGAEDFSFYTQRMPAAHFYV 750
            +++E QAAV++C   +DFMEE MR YPA VNDE MY H +     ++G   V + P  MGAEDF FY  RMP+A F +
Sbjct:  313 EIVEGQAAVNRCGGGVDFMEESMRPYPAVVNDEGMYAHARASAERLLGAGGVRVAPQLMGAEDFGFYAARMPSAFFTI 390          
BLAST of CX675672 vs. ExPASy Swiss-Prot
Match: ILR1_ARATH (IAA-amino acid hydrolase ILR1 OS=Arabidopsis thaliana GN=ILR1 PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 5.508e-15
Identity = 37/76 (48.68%), Postives = 53/76 (69.74%), Query Frame = 1
Query:  517 QVIEMQAAVHQCSATIDFMEEKMRHYPATVNDEKMYEHGKRVGASMVGEPNVHLTPVEMGAEDFSFYTQRMPAAHF 744
            ++ E QA+V++C A ++F E+K   +P   NDE +YEHGK+V  +M+G+ N H  PV MG EDFSF+TQ+  AA F
Sbjct:  310 EISEAQASVYRCKAEVNFEEKKPSLHPVMNNDEGLYEHGKKVAEAMIGKNNFHDFPVTMGGEDFSFFTQKTKAAIF 385          
BLAST of CX675672 vs. ExPASy Swiss-Prot
Match: ILL6_ORYSJ (IAA-amino acid hydrolase ILR1-like 6 OS=Oryza sativa subsp. japonica GN=ILL6 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.357e-13
Identity = 38/81 (46.91%), Postives = 49/81 (60.49%), Query Frame = 1
Query:  517 QVIEMQAAVHQCSATIDFMEEKMRHYPATVNDEKMYEHGKRVGASMVGEPNVHLTPVEMGAEDFSFYTQRMPAAHFYVKCR 759
            +VI  QA VH C A +DF E +   YP TVND +MY H K V   ++G  +    P  MGAEDFSFY+Q +PA  +Y+  R
Sbjct:  371 EVITAQARVHGCEAAVDFFENQS-FYPPTVNDARMYAHVKAVAGELLGAGSYRDVPPMMGAEDFSFYSQVVPAGFYYIGVR 450          
BLAST of CX675672 vs. ExPASy Swiss-Prot
Match: ILL6_ARATH (IAA-amino acid hydrolase ILR1-like 6 OS=Arabidopsis thaliana GN=ILL6 PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.270e-11
Identity = 34/93 (36.56%), Postives = 56/93 (60.22%), Query Frame = 1
Query:  499 NSTYCY------QVIEMQAAVHQCSATIDFMEEKMRHYPATVNDEKMYEHGKRVGASMVGEPNVHLTPVEMGAEDFSFYTQRMPAAHFYVKCR 759
            NS++ Y      +V+  Q  V  C AT++F E++   YP T N++  Y H K+V   ++G+ +  L P  MGAEDF+FY++ +PAA +++  R
Sbjct:  330 NSSFYYLKKRIQEVLMDQVGVFGCQATVNFFEKQNAIYPPTTNNDATYNHLKKVTIDLLGDSHFTLAPQMMGAEDFAFYSEIIPAAFYFIGIR 422          
BLAST of CX675672 vs. ExPASy Swiss-Prot
Match: ILL4_ARATH (IAA-amino acid hydrolase ILR1-like 4 OS=Arabidopsis thaliana GN=ILL4 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.270e-11
Identity = 37/77 (48.05%), Postives = 53/77 (68.83%), Query Frame = 1
Query:  517 QVIEMQAAVHQCSATIDFMEEKMRHYPATVNDEKMYEHGKRVGASMVGEPN-VHLTPVEMGAEDFSFYTQRMPAAHF 744
            QVI  QA+V+ C+AT+DF+EE+   +P TVND+ +++  K V   M+G  N V + P+ MG+EDFSFY Q +P  HF
Sbjct:  306 QVITRQASVNMCNATVDFIEEEKPFFPPTVNDKALHQFFKNVSGDMLGIENYVEMQPL-MGSEDFSFYQQAIP-GHF 380          
The following BLAST results are available for this feature:
BLAST of CX675672 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
ILL4_ORYSJ6.075e-2264.47IAA-amino acid hydrolase ILR1-like 4 OS=Oryza sati... [more]
ILL3_ORYSJ7.935e-2264.47IAA-amino acid hydrolase ILR1-like 3 OS=Oryza sati... [more]
ILL8_ORYSJ6.287e-1942.99IAA-amino acid hydrolase ILR1-like 8 OS=Oryza sati... [more]
ILL7_ORYSJ1.186e-1751.28IAA-amino acid hydrolase ILR1-like 7 OS=Oryza sati... [more]
ILL9_ORYSJ2.236e-1650.00IAA-amino acid hydrolase ILR1-like 9 OS=Oryza sati... [more]
ILR1_ARATH5.508e-1548.68IAA-amino acid hydrolase ILR1 OS=Arabidopsis thali... [more]
ILL6_ORYSJ1.357e-1346.91IAA-amino acid hydrolase ILR1-like 6 OS=Oryza sati... [more]
ILL6_ARATH1.270e-1136.56IAA-amino acid hydrolase ILR1-like 6 OS=Arabidopsi... [more]
ILL4_ARATH1.270e-1148.05IAA-amino acid hydrolase ILR1-like 4 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_63H09_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-63H09-O17-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675672 ID=CX675672; Name=CX675672; organism=Citrus sinensis; type=EST; length=807bp
TAGTCACAGTTGGGTTTATTGTTGCGGGCCAAGCAGGAAATATAATCCCT
GAGATCGTGAGATTTGGAGGCACTTTCCGTAGCTTGACTACAGAAGGTCT
GTTATATCTTGAGCAAAGAATCAAAGAGGTAAAATTATTTGAGGTTGCAT
ATCAATGATACAATGTATTTCTTAGCAGTATTTGCATAATATAATTCATC
AAATTCGCATGAGCTCTAAATAATAATGATTTGCTTCAAATGTAGCTGAA
AGAGTAGACTCCCTTTCAAGGCTGTGATCATATATATATATATATATATA
TATACATATATATATTTATTACATAAGATTATTGCTCAAGAGTACAACTC
ATATTACATGAGATTACAACTGATATTTACAAATCAAACTATTACTAGAA
TTAGTAAGCCTGCCCAGATTTTTACTCTCTCTAATATTCGAGGGACGTTT
ACTCCACTCACAGAAGAAAACTGCCTTAACTCAAATTGAGGTCATAGAAA
TAGCACTTATTGTTATCAGGTCATAGAAATGCAAGCAGCAGTTCATCAGT
GTAGTGCAACAATAGACTTCATGGAGGAAAAAATGAGGCATTATCCGGCA
ACTGTAAATGATGAAAAAATGTATGAACACGGCAAGAGGGTCGGCGCATC
CATGGTTGGAGAGCCAAACGTGCATCTTACTCCAGTTGAGATGGGAGCAG
AGGACTTCAGCTTCTACACTCAGAGGATGCCAGCTGCACATTTTTATGTC
AAATGTAGAGTTTCATTTGTCTTCTGGTGAGTGCAGCTTCATGATTTTCC
ACATTTT
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