CX675671

Overview
NameCX675671
Unique NameCX675671
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length799
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX675671_ssr782 microsatellite CX675671_ssr782:782..791. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX675671 vs. ExPASy Swiss-Prot
Match: ILL3_ORYSJ (IAA-amino acid hydrolase ILR1-like 3 OS=Oryza sativa subsp. japonica GN=ILL3 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.561e-22
Identity = 57/108 (52.78%), Postives = 73/108 (67.59%), Query Frame = -1
Query:  272 QVIEMQAAVHQCSATIDFMEEKMRHYPATVNDEKMYEHGKRVGASMVGEPNVHLTPVEMGAEDFSFYTQRMPAAHFYVKC-----RVSFVFW*VQLHDFPHFLVETAA 580
            +VIE QAAV++C+A +DFME+K+  YPATVNDE+MY H K V  SM+GE NV L+P  MGAEDF FY QR+PAA F +        ++      QLH  PHF+V+  A
Sbjct:  286 EVIEGQAAVNRCTAAVDFMEDKLPPYPATVNDEEMYAHAKAVAESMLGEANVKLSPQGMGAEDFGFYAQRIPAAFFGIGVGNDGGGMAETTTKNQLHS-PHFVVDEEA 392          
BLAST of CX675671 vs. ExPASy Swiss-Prot
Match: ILL4_ORYSJ (IAA-amino acid hydrolase ILR1-like 4 OS=Oryza sativa subsp. japonica GN=ILL4 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.957e-22
Identity = 49/76 (64.47%), Postives = 61/76 (80.26%), Query Frame = -1
Query:  353 QVIEMQAAVHQCSATIDFMEEKMRHYPATVNDEKMYEHGKRVGASMVGEPNVHLTPVEMGAEDFSFYTQRMPAAHF 580
            +VIE QAAV++C+A +DFME+K+R YPATVNDE MY H K V  SM+GE NV ++P+ MGAEDF FY QR+PAA F
Sbjct:  281 EVIEGQAAVNRCTAAVDFMEDKLRPYPATVNDEGMYAHAKAVAESMLGEANVTVSPMCMGAEDFGFYAQRIPAAFF 356          
BLAST of CX675671 vs. ExPASy Swiss-Prot
Match: ILL8_ORYSJ (IAA-amino acid hydrolase ILR1-like 8 OS=Oryza sativa subsp. japonica GN=ILL8 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.164e-19
Identity = 46/107 (42.99%), Postives = 68/107 (63.55%), Query Frame = -1
Query:  347 SNIRGTFTPLTEENCLNSN*GHRNSTYCYQVIEMQAAVHQCSATIDFMEEKMRHYPATVNDEKMYEHGKRVGASMVGEPNVHLTPVEMGAEDFSFYTQRMPAAHFYV 667
            +++ GTF  +T+E         R      ++IE QA V++C+A +DF+EE++R YPATVND+ MY H K V  +M+GE NV +    MG EDF+FY +R P A F++
Sbjct:  294 ASLGGTFRSMTDEGLAYLMKRIR------EIIEAQAGVNRCAAAVDFLEEELRPYPATVNDDGMYGHAKAVAEAMLGEANVRVAARSMGGEDFAFYARRSPGAFFFI 394          
BLAST of CX675671 vs. ExPASy Swiss-Prot
Match: ILL7_ORYSJ (IAA-amino acid hydrolase ILR1-like 7 OS=Oryza sativa subsp. japonica GN=ILL7 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.059e-18
Identity = 45/100 (45.00%), Postives = 61/100 (61.00%), Query Frame = -1
Query:  281 QVIEMQAAVHQCSATIDFMEEKMRHYPATVNDEKMYEHGKRVGASMVGEPNVHLTPVEMGAEDFSFYTQRMPAAHFYVKCRVSFVFW*VQLHDFPHFLVE 580
            +++E  A VH+C+AT+DFMEE+   YPATVNDE MY H + V   ++GE  V +    MG+EDF+FY QR PAA F +          V     PHF+V+
Sbjct:  328 EIVEAHATVHRCTATVDFMEEERIPYPATVNDEGMYRHARAVAVDVLGEDGVKVGTPFMGSEDFAFYAQRFPAAFFMIGVGNETTMRKVYPLHSPHFVVD 427          
BLAST of CX675671 vs. ExPASy Swiss-Prot
Match: ILL9_ORYSJ (IAA-amino acid hydrolase ILR1-like 9 OS=Oryza sativa subsp. japonica GN=ILL9 PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 9.842e-17
Identity = 45/105 (42.86%), Postives = 61/105 (58.10%), Query Frame = -1
Query:  272 QVIEMQAAVHQCSATIDFMEEKMRHYPATVNDEKMYEHGKRVGASMVGEPNVHLTPVEMGAEDFSFYTQRMPAAHFYVKCRVSFVFW*VQLH--DFPHFLVETAA 580
            +++E QAAV++C   +DFMEE MR YPA VNDE MY H +     ++G   V + P  MGAEDF FY  RMP+A F +    +        H    PHF+++ AA
Sbjct:  313 EIVEGQAAVNRCGGGVDFMEESMRPYPAVVNDEGMYAHARASAERLLGAGGVRVAPQLMGAEDFGFYAARMPSAFFTIGVGNATTSSARAAHTTHSPHFVIDEAA 417          
BLAST of CX675671 vs. ExPASy Swiss-Prot
Match: ILR1_ARATH (IAA-amino acid hydrolase ILR1 OS=Arabidopsis thaliana GN=ILR1 PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.421e-15
Identity = 43/103 (41.75%), Postives = 64/103 (62.14%), Query Frame = -1
Query:  272 QVIEMQAAVHQCSATIDFMEEKMRHYPATVNDEKMYEHGKRVGASMVGEPNVHLTPVEMGAEDFSFYTQRMPAAHFYVKCRVSFVFW*VQLHDFPHFLVETAA 580
            ++ E QA+V++C A ++F E+K   +P   NDE +YEHGK+V  +M+G+ N H  PV MG EDFSF+TQ+  AA F +  +   +     LH  P+F V+  A
Sbjct:  310 EISEAQASVYRCKAEVNFEEKKPSLHPVMNNDEGLYEHGKKVAEAMIGKNNFHDFPVTMGGEDFSFFTQKTKAAIFVLGVKNETLGAGKPLHS-PYFFVDEEA 411          
BLAST of CX675671 vs. ExPASy Swiss-Prot
Match: ILL6_ORYSJ (IAA-amino acid hydrolase ILR1-like 6 OS=Oryza sativa subsp. japonica GN=ILL6 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.330e-13
Identity = 38/81 (46.91%), Postives = 49/81 (60.49%), Query Frame = -1
Query:  338 QVIEMQAAVHQCSATIDFMEEKMRHYPATVNDEKMYEHGKRVGASMVGEPNVHLTPVEMGAEDFSFYTQRMPAAHFYVKCR 580
            +VI  QA VH C A +DF E +   YP TVND +MY H K V   ++G  +    P  MGAEDFSFY+Q +PA  +Y+  R
Sbjct:  371 EVITAQARVHGCEAAVDFFENQS-FYPPTVNDARMYAHVKAVAGELLGAGSYRDVPPMMGAEDFSFYSQVVPAGFYYIGVR 450          
BLAST of CX675671 vs. ExPASy Swiss-Prot
Match: ILL6_ARATH (IAA-amino acid hydrolase ILR1-like 6 OS=Arabidopsis thaliana GN=ILL6 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.921e-12
Identity = 38/112 (33.93%), Postives = 65/112 (58.04%), Query Frame = -1
Query:  281 NSTYCY------QVIEMQAAVHQCSATIDFMEEKMRHYPATVNDEKMYEHGKRVGASMVGEPNVHLTPVEMGAEDFSFYTQRMPAAHFYVKCRVSFVFW*VQLHDFPHFLVE 598
            NS++ Y      +V+  Q  V  C AT++F E++   YP T N++  Y H K+V   ++G+ +  L P  MGAEDF+FY++ +PAA +++  R +     V +   PHF+++
Sbjct:  330 NSSFYYLKKRIQEVLMDQVGVFGCQATVNFFEKQNAIYPPTTNNDATYNHLKKVTIDLLGDSHFTLAPQMMGAEDFAFYSEIIPAAFYFIGIR-NEELGSVHIAHSPHFMID 440          
BLAST of CX675671 vs. ExPASy Swiss-Prot
Match: ILL4_ARATH (IAA-amino acid hydrolase ILR1-like 4 OS=Arabidopsis thaliana GN=ILL4 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.245e-11
Identity = 37/77 (48.05%), Postives = 53/77 (68.83%), Query Frame = -1
Query:  353 QVIEMQAAVHQCSATIDFMEEKMRHYPATVNDEKMYEHGKRVGASMVGEPN-VHLTPVEMGAEDFSFYTQRMPAAHF 580
            QVI  QA+V+ C+AT+DF+EE+   +P TVND+ +++  K V   M+G  N V + P+ MG+EDFSFY Q +P  HF
Sbjct:  306 QVITRQASVNMCNATVDFIEEEKPFFPPTVNDKALHQFFKNVSGDMLGIENYVEMQPL-MGSEDFSFYQQAIP-GHF 380          
The following BLAST results are available for this feature:
BLAST of CX675671 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
ILL3_ORYSJ4.561e-2252.78IAA-amino acid hydrolase ILR1-like 3 OS=Oryza sati... [more]
ILL4_ORYSJ5.957e-2264.47IAA-amino acid hydrolase ILR1-like 4 OS=Oryza sati... [more]
ILL8_ORYSJ6.164e-1942.99IAA-amino acid hydrolase ILR1-like 8 OS=Oryza sati... [more]
ILL7_ORYSJ3.059e-1845.00IAA-amino acid hydrolase ILR1-like 7 OS=Oryza sati... [more]
ILL9_ORYSJ9.842e-1742.86IAA-amino acid hydrolase ILR1-like 9 OS=Oryza sati... [more]
ILR1_ARATH1.421e-1541.75IAA-amino acid hydrolase ILR1 OS=Arabidopsis thali... [more]
ILL6_ORYSJ1.330e-1346.91IAA-amino acid hydrolase ILR1-like 6 OS=Oryza sati... [more]
ILL6_ARATH1.921e-1233.93IAA-amino acid hydrolase ILR1-like 6 OS=Arabidopsi... [more]
ILL4_ARATH1.245e-1148.05IAA-amino acid hydrolase ILR1-like 4 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_63H09_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-63H09-O17-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675671 ID=CX675671; Name=CX675671; organism=Citrus sinensis; type=EST; length=799bp
TTTTTTTTTTTTTTTTTATCACCAATGCTTTTAGCATATTCCCATATTAT
ATTAATGTTGTAAACTGACAAACGTTATGTCAACTAAAAAGTCAAACAAG
CAAAACCCTTGAAAAAAAATCCTAAAAATTGATCCAAAAACATAAGAAAT
ACACTCCAGTCTTGGGCATAATTTGGAGTTGGGACAACAGCCCTTCATGA
TTCCTCATATTGCCATAAGATCACCATAACTGCGCATCAAAAAAATCGAC
GCTGCAAACAGGCCACCAGCACGCAGCAGTTTCTACAAGAAAATGTGGAA
AATCATGAAGCTGCACTCACCAGAAGACAAATGAAACTCTACATTTGACA
TAAAAATGTGCAGCTGGCATCCTCTGAGTGTAGAAGCTGAAGTCCTCTGC
TCCCATCTCAACTGGAGTAAGATGCACGTTTGGCTCTCCAACCATGGATG
CGCCGACCCTCTTGCCGTGTTCATACATTTTTTCATCATTTACAGTTGCC
GGATAATGCCTCATTTTTTCCTCCATGAAGTCTATTGTTGCACTACACTG
ATGAACTGCTGCTTGCATTTCTATGACCTGATAACAATAAGTGCTATTTC
TATGACCTCAATTTGAGTTAAGGCAGTTTTCTTCTGTGAGTGGAGTAAAC
GTCCCTCGAATATTAGAGAGAGTAAAAATCTGGGCAGGCTTACTAATTCT
AGTAATAGTTTGATTTGTAAATATCAGTTGTAATCTCATGTAATATGAGT
TGTACTCTTGAGCAATAATCTTATGTAATAAATATATATATGTATATAT
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