CX675670

Overview
NameCX675670
Unique NameCX675670
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length744
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9466 contig Csv1_Contig9466:105..848. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675670 vs. ExPASy Swiss-Prot
Match: ARF2_ORYSJ (ADP-ribosylation factor 2 OS=Oryza sativa subsp. japonica GN=ARF PE=2 SV=2)

HSP 1 Score: 334.724 bits (857), Expect = 3.131e-91
Identity = 165/167 (98.80%), Postives = 166/167 (99.40%), Query Frame = -3
Query:  242 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTILTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 742
            KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA
Sbjct:   15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 181          
BLAST of CX675670 vs. ExPASy Swiss-Prot
Match: ARF1_ARATH (ADP-ribosylation factor 1 OS=Arabidopsis thaliana GN=ARF1 PE=1 SV=2)

HSP 1 Score: 334.339 bits (856), Expect = 4.089e-91
Identity = 165/167 (98.80%), Postives = 166/167 (99.40%), Query Frame = -3
Query:  242 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTILTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 742
            KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA+KA
Sbjct:   15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKA 181          
BLAST of CX675670 vs. ExPASy Swiss-Prot
Match: ARF2_ARATH (ADP-ribosylation factor 2 OS=Arabidopsis thaliana GN=ARF2-A PE=2 SV=3)

HSP 1 Score: 333.954 bits (855), Expect = 5.340e-91
Identity = 165/167 (98.80%), Postives = 165/167 (98.80%), Query Frame = -3
Query:  242 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTILTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 742
            KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA KA
Sbjct:   15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAGKA 181          
BLAST of CX675670 vs. ExPASy Swiss-Prot
Match: ARF_VIGUN (ADP-ribosylation factor OS=Vigna unguiculata GN=ARF PE=2 SV=3)

HSP 1 Score: 332.798 bits (852), Expect = 1.190e-90
Identity = 164/167 (98.20%), Postives = 166/167 (99.40%), Query Frame = -3
Query:  242 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTILTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 742
            KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL+WLSNNIA+KA
Sbjct:   15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLEWLSNNIASKA 181          
BLAST of CX675670 vs. ExPASy Swiss-Prot
Match: ARF1_ORYSJ (ADP-ribosylation factor 1 OS=Oryza sativa subsp. japonica GN=Os01g0813400 PE=2 SV=3)

HSP 1 Score: 332.798 bits (852), Expect = 1.190e-90
Identity = 164/167 (98.20%), Postives = 166/167 (99.40%), Query Frame = -3
Query:  242 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTILTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 742
            KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA+KA
Sbjct:   15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKA 181          
BLAST of CX675670 vs. ExPASy Swiss-Prot
Match: ARF1_CHLRE (ADP-ribosylation factor 1 OS=Chlamydomonas reinhardtii GN=ARF1 PE=2 SV=2)

HSP 1 Score: 332.413 bits (851), Expect = 1.554e-90
Identity = 163/166 (98.19%), Postives = 165/166 (99.40%), Query Frame = -3
Query:  245 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTILTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 742
            KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR+RVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN+ANK
Sbjct:   15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNLANK 180          
BLAST of CX675670 vs. ExPASy Swiss-Prot
Match: ARF1_DAUCA (ADP-ribosylation factor 1 OS=Daucus carota GN=ARF1 PE=2 SV=2)

HSP 1 Score: 330.872 bits (847), Expect = 4.521e-90
Identity = 163/167 (97.60%), Postives = 165/167 (98.80%), Query Frame = -3
Query:  242 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTILTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 742
            KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEI DKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA+K+
Sbjct:   15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEIIDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKS 181          
BLAST of CX675670 vs. ExPASy Swiss-Prot
Match: ARF1_SALBA (ADP-ribosylation factor 1 OS=Salix bakko GN=ARF1 PE=2 SV=3)

HSP 1 Score: 330.487 bits (846), Expect = 5.904e-90
Identity = 163/167 (97.60%), Postives = 165/167 (98.80%), Query Frame = -3
Query:  242 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTILTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 742
            KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRV EARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI++KA
Sbjct:   15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVGEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNISSKA 181          
BLAST of CX675670 vs. ExPASy Swiss-Prot
Match: ARF1_CATRO (ADP-ribosylation factor 1 OS=Catharanthus roseus GN=ARF1 PE=2 SV=3)

HSP 1 Score: 327.405 bits (838), Expect = 4.998e-89
Identity = 162/167 (97.01%), Postives = 164/167 (98.20%), Query Frame = -3
Query:  242 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTILTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 742
            KKEMRILMVGLDAAGKTTILY+LKLGEIVTTI TIGFNVETVEY+ ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDK GLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA
Sbjct:   15 KKEMRILMVGLDAAGKTTILYQLKLGEIVTTIPTIGFNVETVEYQYISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKHGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 181          
BLAST of CX675670 vs. ExPASy Swiss-Prot
Match: ARF_MAIZE (ADP-ribosylation factor OS=Zea mays GN=ARF1 PE=2 SV=2)

HSP 1 Score: 327.02 bits (837), Expect = 6.528e-89
Identity = 161/167 (96.41%), Postives = 165/167 (98.80%), Query Frame = -3
Query:  242 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTILTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 742
            KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL+SLRQRHWYIQSTCAT+GEGLYEGLDWLS+NIA K+
Sbjct:   15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLNSLRQRHWYIQSTCATTGEGLYEGLDWLSSNIATKS 181          
The following BLAST results are available for this feature:
BLAST of CX675670 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 217
Match NameE-valueIdentityDescription
ARF2_ORYSJ3.131e-9198.80ADP-ribosylation factor 2 OS=Oryza sativa subsp. j... [more]
ARF1_ARATH4.089e-9198.80ADP-ribosylation factor 1 OS=Arabidopsis thaliana ... [more]
ARF2_ARATH5.340e-9198.80ADP-ribosylation factor 2 OS=Arabidopsis thaliana ... [more]
ARF_VIGUN1.190e-9098.20ADP-ribosylation factor OS=Vigna unguiculata GN=AR... [more]
ARF1_ORYSJ1.190e-9098.20ADP-ribosylation factor 1 OS=Oryza sativa subsp. j... [more]
ARF1_CHLRE1.554e-9098.19ADP-ribosylation factor 1 OS=Chlamydomonas reinhar... [more]
ARF1_DAUCA4.521e-9097.60ADP-ribosylation factor 1 OS=Daucus carota GN=ARF1... [more]
ARF1_SALBA5.904e-9097.60ADP-ribosylation factor 1 OS=Salix bakko GN=ARF1 P... [more]
ARF1_CATRO4.998e-8997.01ADP-ribosylation factor 1 OS=Catharanthus roseus G... [more]
ARF_MAIZE6.528e-8996.41ADP-ribosylation factor OS=Zea mays GN=ARF1 PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_63H07_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-63H07-O13-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675670 ID=CX675670; Name=CX675670; organism=Citrus sinensis; type=EST; length=744bp
TTTTTTTAACAGCCAAAAAATCATTGAATTCTGAATAATGAGGGTAATTT
AAACTCTACAATGACAATGCAGAAAACTTTATAGTATGGTGCCAATCAAA
TATCTAACACAAACAAATACATTCTACTGAACGTAGGTAGTAAAGCCCAA
AAAGAATCCCCGACAAAATAAACAAAAGCATAGTAACATCATTCACATAG
ATGCTGCCGCAAAGAGTCGCTCAGACTTGACCAATCACTTAAGCCTTGTT
AGCGATGTTGTTGGAGAGCCAGTCCAGACCCTCATAGAGTCCTTCCCCAG
ATGTTGCACATGTGCTCTGGATGTACCAGTGGCGTTGGCGAAGTGAGTGA
AGACCAAGCTTATCAGTGATCTCTGCAGCATTCATGGCATTTGGAAGATC
TTGCTTGTTGGCAAAAACAAGCAGCACAGCATCCCTCAACTCATCCTCAT
TCAGCATCCGGTGCAGTTCATCTCTAGCTTCAACCACACGGTCACGATCA
TTGCTATCAACCACAAAGATAAGTCCTTGAGTGTTTTGGAAGTAATGTCT
CCACAAAGGACGAATCTTATCCTGACCCCCAACATCCCAAACAGTGAAGC
TGATGTTCTTATATTCCACAGTCTCCACGTTGAAACCAATGGTAAGAATG
GTTGTCACAATCTCACCGAGCTTGAGCTTGTACAAAATGGTGGTCTTACC
AGCAGCGTCGAGACCCACCATCAGAATTCGCATCTCTTTCTTGG
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