CK939375

Overview
NameCK939375
Unique NameCK939375
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length831
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK939375 vs. ExPASy Swiss-Prot
Match: SFRS7_MOUSE (Splicing factor, arginine/serine-rich 7 OS=Mus musculus GN=Sfrs7 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.591e-12
Identity = 42/109 (38.53%), Postives = 54/109 (49.54%), Query Frame = 1 
Query:  184 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFXXXXXXXXXXXXXXGK----NGWRVELSHNSKXXXXXXXXXXXXXEDL--KCYECGEPGHFAREC 492
            ++VYVGNL     + +LE  F  +G LR+VW+AR PPG+AFVEF              GK    +  RVELS                  D   +CYECGE GH+A +C
Sbjct:   40 TKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDC 148
[Close]
BLAST of CK939375 vs. ExPASy Swiss-Prot
Match: SFRS7_HUMAN (Splicing factor, arginine/serine-rich 7 OS=Homo sapiens GN=SFRS7 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.591e-12
Identity = 42/109 (38.53%), Postives = 54/109 (49.54%), Query Frame = 1 
Query:  184 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFXXXXXXXXXXXXXXGK----NGWRVELSHNSKXXXXXXXXXXXXXEDL--KCYECGEPGHFAREC 492
            ++VYVGNL     + +LE  F  +G LR+VW+AR PPG+AFVEF              GK    +  RVELS                  D   +CYECGE GH+A +C
Sbjct:   11 TKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDC 119
[Close]
BLAST of CK939375 vs. ExPASy Swiss-Prot
Match: SFRS7_BOVIN (Splicing factor, arginine/serine-rich 7 OS=Bos taurus GN=SFRS7 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.591e-12
Identity = 42/109 (38.53%), Postives = 54/109 (49.54%), Query Frame = 1 
Query:  184 SRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFVEFXXXXXXXXXXXXXXGK----NGWRVELSHNSKXXXXXXXXXXXXXEDL--KCYECGEPGHFAREC 492
            ++VYVGNL     + +LE  F  +G LR+VW+AR PPG+AFVEF              GK    +  RVELS                  D   +CYECGE GH+A +C
Sbjct:   11 TKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRPFDPNDRCYECGEKGHYAYDC 119
The following BLAST results are available for this feature:
BLAST of CK939375 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
SFRS7_MOUSE4.591e-1238.53Splicing factor, arginine/serine-rich 7 OS=Mus mus... [more]
SFRS7_HUMAN4.591e-1238.53Splicing factor, arginine/serine-rich 7 OS=Homo sa... [more]
SFRS7_BOVIN4.591e-1238.53Splicing factor, arginine/serine-rich 7 OS=Bos tau... [more]
back to top
Properties
Property NameValue
Genbank descriptionCGF1004751_D12 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IIIF_D12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939375 ID=CK939375; Name=CK939375; organism=Citrus sinensis; type=EST; length=831bp
GGGGGAATAGAAAATATCTTAAACTCGCATTATAAAAGAAGGCCCAGCTC
CTTAATTGAAGCCCGATCTCGGCATTGCCCTCTCTTTAATATTTTTACGC
TCGCGCTCTCAAATCTCCCAAAAAAATCGTACAGAAAAAGTCATACACAG
GTCACTCAAGGTTGAAGGTGGCTTGCAAAAATGTCTAGGGTTTATGTTGG
GAATTTGGATCCTCGGGTATCTGAAAGGGATCTTGAAGATGAGTTTCGCA
TGTTTGGCGTGCTTCGCAGTGTGTGGGTTGCTCGAAGGCCCCCGGGGTAT
GCCTTTGTTGAGTTTGATGATCGCAGGGATGCTGTAGATGCTATTCGTGC
ACTAGATGGGAAAAATGGCTGGCGTGTGGAGCTTTCTCATAACTCTAAGG
GTGGTGGAGGCCGTGGTGGGCGTGGGCGTGGTGGAGGTGAGGACTTGAAG
TGTTATGAGTGTGGTGAGCCTGGTCACTTTGCTCGTGAATGTCGCTTGCG
CATTGGTTCACGTGGCTTGGGGAGTGGACGACGTCGTAGCCCTAGCCCAC
GTCGACGTAGAAGTCCAAGTTATGGGAGCTATAGCCCCCGTGGAAGACGA
TCTCCTCCTCCACGTCGCCGCAGCATGTCACCTCGACGTGGTCGCAGTTA
CAGCAGGTCACCCCCACATCGCCATTCTCGTCGTGGTTCACCTTATGCTA
ATGGGGACTAAGGCTGTAACCTCAACTGAAGCAAATGTGTAATGGATTGG
AGCACATGTTGGCAGTATTGTAGTCGTTATAGGATCAGTTGACGAAAGAG
GATTTATATTAGTTATGTTCATGTCATGACT
back to top