CK939370

Overview
NameCK939370
Unique NameCK939370
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length890
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939370 vs. ExPASy Swiss-Prot
Match: PME1_CITSI (Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE=2 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 8.256e-63
Identity = 133/259 (51.35%), Postives = 171/259 (66.02%), Query Frame = 3
Query:  126 TRKNNSSNTNDEXXXXXXXXXXXPVIRSSCSATLYPELCFXXXXXXXXXXXXKVNSPKDVIRLSLNLTITAVQHNYFATKKLITTRKSTLTKREKTSLHDCLEMVDETLDELYKTEHELQGYPAAANNKSIAEQADELKILVSAAMTNQETCLDGFSHERADKKIREELMEGQMHVFHMCSNALAMIKNMTDGDIGKDIVDHYSKARRLDDETK----WPEWLSAGDRRLLQXXXXXXXXXXXXXGSGNYLTVAAAVAA 890
            +RKN+  N N+             +++SSCS+T YP+LCF            KV S KDVI +SLN+T TAV+HNYF  +KL+  +++ LTKREK +LHDCLE +DETLDEL+K   +L+ YP   N KS+++ AD+LK L+SAAMTNQ TCLDGFSH+ A+K +R+ L +GQ+HV  MCSNALAMIKNMTD D+   ++   S  R+L +ET     WP WLS GDRRLLQ             GSGN+ TVAAAVAA
Sbjct:   53 SRKNSGDNGNEPHHA---------ILKSSCSSTRYPDLCFSAIAAVPEASK-KVTSQKDVIEMSLNITTTAVEHNYFGIQKLL--KRTNLTKREKVALHDCLETIDETLDELHKAVEDLEEYP---NKKSLSQHADDLKTLMSAAMTNQGTCLDGFSHDDANKHVRDALSDGQVHVEKMCSNALAMIKNMTDTDM---MIMRTSNNRKLTEETSTVDGWPAWLSPGDRRLLQSSSVTPNAVVAADGSGNFKTVAAAVAA 293          
BLAST of CK939370 vs. ExPASy Swiss-Prot
Match: PME3_CITSI (Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 2.402e-62
Identity = 132/259 (50.97%), Postives = 171/259 (66.02%), Query Frame = 3
Query:  126 TRKNNSSNTNDEXXXXXXXXXXXPVIRSSCSATLYPELCFXXXXXXXXXXXXKVNSPKDVIRLSLNLTITAVQHNYFATKKLITTRKSTLTKREKTSLHDCLEMVDETLDELYKTEHELQGYPAAANNKSIAEQADELKILVSAAMTNQETCLDGFSHERADKKIREELMEGQMHVFHMCSNALAMIKNMTDGDIGKDIVDHYSKARRLDDETK----WPEWLSAGDRRLLQXXXXXXXXXXXXXGSGNYLTVAAAVAA 890
            +RKN+  N N+             +++SSCS+T YP+LCF            KV S KDVI +SLN+T TAV+HNYF  +KL+  +++ LTKREK +LHDCLE +DETLDEL+K   +L+ YP   N KS+++ AD+LK L+SAAMTNQ TCLDGFSH+ A+K +R+ L +GQ+HV  MCSNALAMIKNMTD D+   ++   S  R+L +ET     WP WLS GDRRLLQ             GSGN+ TVAA+VAA
Sbjct:   53 SRKNSGDNGNEPHHA---------ILKSSCSSTRYPDLCFSAIAAVPEASK-KVTSQKDVIEMSLNITTTAVEHNYFGIQKLL--KRTNLTKREKVALHDCLETIDETLDELHKAVEDLEEYP---NKKSLSQHADDLKTLMSAAMTNQGTCLDGFSHDDANKHVRDALSDGQVHVEKMCSNALAMIKNMTDTDM---MIMRTSNNRKLIEETSTVDGWPAWLSTGDRRLLQSSSVTPNVVVAADGSGNFKTVAASVAA 293          
BLAST of CK939370 vs. ExPASy Swiss-Prot
Match: PMEU1_SOLLC (Pectinesterase/pectinesterase inhibitor U1 OS=Solanum lycopersicum GN=PMEU1 PE=2 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 4.530e-61
Identity = 128/253 (50.59%), Postives = 168/253 (66.40%), Query Frame = 3
Query:  132 KNNSSNTNDEXXXXXXXXXXXPVIRSSCSATLYPELCFXXXXXXXXXXXXKVNSPKDVIRLSLNLTITAVQHNYFATKKLITTRKSTLTKREKTSLHDCLEMVDETLDELYKTEHELQGYPAAANNKSIAEQADELKILVSAAMTNQETCLDGFSHERADKKIREELMEGQMHVFHMCSNALAMIKNMTDGDIGKDI-VDHYSKARRL-DDETKWPEWLSAGDRRLLQXXXXXXXXXXXXXGSGNYLTVAAAV 884
            K++S N++D             +++S+CS TL+PELC+            KV S KDVI LSLN+T+ AV+ NY+A K+LI TRK  LT REK +LHDCLE +DETLDEL+    +L+ YP   N KS+ E  ++LK L+S+A+TNQETCLDGFSH+ ADKK+R+ L++GQ HV  MCSNALAMI NMTD DI  ++ +   +  R+L +D  +WPEWLSAGDRRLLQ             GSG+Y TV+ AV
Sbjct:   43 KSHSKNSDDHADIMAISSSAHAIVKSACSNTLHPELCYSAIVNVSDFSK-KVTSQKDVIELSLNITVKAVRRNYYAVKELIKTRKG-LTPREKVALHDCLETMDETLDELHTAVEDLELYP---NKKSLKEHVEDLKTLISSAITNQETCLDGFSHDEADKKVRKVLLKGQKHVEKMCSNALAMICNMTDTDIANEMKLSAPANNRKLVEDNGEWPEWLSAGDRRLLQSSTVTPDVVVAADGSGDYKTVSEAV 290          
BLAST of CK939370 vs. ExPASy Swiss-Prot
Match: PME3_ARATH (Pectinesterase/pectinesterase inhibitor 3 OS=Arabidopsis thaliana GN=PME3 PE=2 SV=2)

HSP 1 Score: 233.032 bits (593), Expect = 1.722e-60
Identity = 132/251 (52.59%), Postives = 160/251 (63.75%), Query Frame = 3
Query:  198 VIRSSCSATLYPELCFXXXXXXXXXXXXKVNSPKDVIRLSLNLTITAVQHNYFATKKLITTRKSTLTKREKTSLHDCLEMVDETLDELYKTEHELQGYPAAANNKSIAEQADELKILVSAAMTNQETCLDGFSHERADKKIREELMEGQMHVFHMCSNALAMIKNMTDGDIGK-----DIVDHYSKARRLDDETK---------------WPEWLSAGDRRLLQXXXXXXXXXXXXXGSGNYLTVAAAVAA 890
            V+RSSCS+T YPELC             ++ S KDVI  S+NLTITAV+HNYF  KKLI  RK  LT REKT+LHDCLE +DETLDEL++T  +L  YP     K++ E A +LK L+S+A+TNQETCLDGFSH+ ADK++R+ L++GQ+HV HMCSNALAMIKNMTD DI        I  +  K +  + ET                WP WLSAGDRRLLQ             GSG + TVAAAVAA
Sbjct:   58 VLRSSCSSTRYPELCISAVVTAGGV---ELTSQKDVIEASVNLTITAVEHNYFTVKKLIKKRKG-LTPREKTALHDCLETIDETLDELHETVEDLHLYPT---KKTLREHAGDLKTLISSAITNQETCLDGFSHDDADKQVRKALLKGQIHVEHMCSNALAMIKNMTDTDIANFEQKAKITSNNRKLKEENQETTVAVDIAGAGELDSEGWPTWLSAGDRRLLQGSGVKADATVAADGSGTFKTVAAAVAA 301          
BLAST of CK939370 vs. ExPASy Swiss-Prot
Match: PME2_ARATH (Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 PE=2 SV=2)

HSP 1 Score: 222.631 bits (566), Expect = 2.327e-57
Identity = 125/243 (51.44%), Postives = 157/243 (64.61%), Query Frame = 3
Query:  198 VIRSSCSATLYPELCFXXXXXXXXXXXXKVNSPKDVIRLSLNLTITAVQHNYFATKKLITTRKSTLTKREKTSLHDCLEMVDETLDELYKTEHELQGYPAAANNKSIAEQADELKILVSAAMTNQETCLDGFSHERADKKIREELMEGQMHVFHMCSNALAMIKNMTDGDIG------KDIVDHYSKARRLD------DETKWPEWLSAGDRRLLQXXXXXXXXXXXXXGSGNYLTVAAAVAA 890
            +++S CS+TLYPELCF            ++ S K+VI  SLNLT  AV+HNYFA KKLI  RK  LT RE T+LHDCLE +DETLDEL+    +L  YP     KS+ + AD+LK L+S+A+TNQ TCLDGFS++ AD+K+R+ L++GQ+HV HMCSNALAMIKNMT+ DI       K      +  R+L       D   WP+WLS GDRRLLQ             GSG++ TVAAAVAA
Sbjct:   61 ILKSVCSSTLYPELCFSAVAATGGK---ELTSQKEVIEASLNLTTKAVKHNYFAVKKLIAKRKG-LTPREVTALHDCLETIDETLDELHVAVEDLHQYP---KQKSLRKHADDLKTLISSAITNQGTCLDGFSYDDADRKVRKALLKGQVHVEHMCSNALAMIKNMTETDIANFELRDKSSTFTNNNNRKLKEVTGDLDSDGWPKWLSVGDRRLLQGSTIKADATVADDGSGDFTTVAAAVAA 296          
BLAST of CK939370 vs. ExPASy Swiss-Prot
Match: 21KD_DAUCA (21 kDa protein OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.428e-14
Identity = 48/164 (29.27%), Postives = 88/164 (53.66%), Query Frame = 3
Query:  201 IRSSCSATLYPELCFXXXXXXXXXXXXKVNSPKDVIRLSLNLTITAVQHNYFATKKLITTRKSTLTKREKTSLHDCLEMVDETLDELYKTEHELQGYPAAANNKSIAEQADELKILVSAAMTNQETCLDGFSHERADKKIREELMEGQMHVFHMCSNALAMIKN 692
            I++SC+ T YP +C               N+P+++   +L +++T  Q      K+L   +   L  R+  ++HDCLE V+++LD + ++  E++    A  N     +   ++  VSAA+T++ TC+DGF+ +  D KI+E +    + V  + SNALA++ N
Sbjct:   29 IKTSCTLTTYPAVCEQSLSAYAKTIQ---NNPQELASTALQVSLTRTQQAQTFMKRL--NKFKGLKARQYAAIHDCLEEVEDSLDRVSRSCDEMKNLSHAKGN-DFTFRMSNVETWVSAALTDETTCMDGFAGKGMDGKIKESVRAQVVAVARVTSNALALVNN 186          
BLAST of CK939370 vs. ExPASy Swiss-Prot
Match: PME40_ARATH (Probable pectinesterase/pectinesterase inhibitor 40 OS=Arabidopsis thaliana GN=PME40 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.181e-14
Identity = 58/209 (27.75%), Postives = 99/209 (47.37%), Query Frame = 3
Query:  300 DVIRLSLNLTITAVQHNYFATKKLITTRKSTLTKREKTSLHDCLEMVDETLDELYKTEHELQGYPAAANNKSIAEQADELKILVSAAMTNQETCLDGFSHERADKK----------IREELMEGQMHVFHMCSNALAMIKNMTDGDIGKDIVDHYSKARRLDDETKWPEWLSAGDRRLLQ--XXXXXXXXXXXXXGSGNYLTVAAAVAA 890
            +++  +LN TI+ V  +      L+    S L+ R+  +  DCLE++D+T+ +L     +L+ +    +N         +K+L+SAAMTN  TCLDGF+    D+           + E L E   ++    S++LAM++N+     GK           + ++  +P W+S  DR LLQ               G+GNY T+  A++A
Sbjct:   39 ELVVTALNQTISNVNLSSSNFSDLLQRLGSNLSHRDLCAFDDCLELLDDTVFDLTTAISKLRSHSPELHN---------VKMLLSAAMTNTRTCLDGFASSDNDENLNNNDNKTYGVAESLKESLFNISSHVSDSLAMLENIPGHIPGK-----------VKEDVGFPMWVSGSDRNLLQDPVDETKVNLVVAQNGTGNYTTIGEAISA 227          
BLAST of CK939370 vs. ExPASy Swiss-Prot
Match: PME45_ARATH (Putative pectinesterase/pectinesterase inhibitor 45 OS=Arabidopsis thaliana GN=PME45 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.132e-11
Identity = 68/241 (28.22%), Postives = 112/241 (46.47%), Query Frame = 3
Query:  198 VIRSSCSATLYPELCFXXXXXXXXXXXXKVNSPKDVIRLSLNLTITAVQHNYFATKKLITTRKSTLTKREKTSLHDCLEMVDETLDELYKTEHELQGYPAAANNKSIAEQADELKILVSAAMTNQETCLDGFSHERADKKIREELMEGQMHVFHMCSNALAMIKNMTDGDIG-------KDIVDHYSKARRLDDETKWPEWLSAGDRRLLQ---XXXXXXXXXXXXXGSGNYLTVAAAVAA 890
            +I++ C++TLY   C             K ++P+   R  L   I AV  +     K + + K T  K +K ++  C  +VDE  +EL  +   +    +  NN   A+   +L   +SA M+ QETC+DGF   +   +IR+     Q+    + SN+LAMIK++ DG +        + +++  S A+  D  T    WLS  +RR+L+                GSGN+ T+ AA+ A
Sbjct:   94 IIQTLCNSTLYKPTC-----QNTLKNETKKDTPQTDPRSLLKSAIVAVNDDLDQVFKRVLSLK-TENKDDKDAIAQCKLLVDEAKEELGTSMKRIND--SEVNN--FAKIVPDLDSWLSAVMSYQETCVDGFEEGKLKTEIRKNFNSSQV----LTSNSLAMIKSL-DGYLSSVPKVKTRLLLEARSSAKETDHIT---SWLSNKERRMLKAVDVKALKPNATVAKDGSGNFTTINAALKA 316          
BLAST of CK939370 vs. ExPASy Swiss-Prot
Match: PME34_ARATH (Probable pectinesterase/pectinesterase inhibitor 34 OS=Arabidopsis thaliana GN=PME34 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.292e-11
Identity = 50/207 (24.15%), Postives = 98/207 (47.34%), Query Frame = 3
Query:  201 IRSSCSATLYPELCFXXXXXXXXXXXXKVNSPKDVIRLSLNLTITAVQHNYFATKKLITTRKSTLTKREKTSLHDCLEMVDETLDELYKTEHELQGYPAAANNKSIAEQADELKILVSAAMTNQETCLDGFSHERADKKIREELMEGQMHVFHMCSNALAMIKNMTDGDIGKDIVDHYSKARRL----DDETKWPEWLSAGDRRLLQ 809
            I  +C  T +PELC               +S KD+I +++N+T+    H  +++  L       +  R +++   C+E++D+++D L +         A ++  S + +  ++   +SAA+TN +TC +GF     D  +++ +     ++  + SN LA+     DGD   D      + RRL    + E K+P W+   +R +L+
Sbjct:   87 ISKACELTRFPELCVDSLMDFPGSLA--ASSSKDLIHVTVNMTLHHFSHALYSSASLSFV---DMPPRARSAYDSCVELLDDSVDALSR---------ALSSVVSSSAKPQDVTTWLSAALTNHDTCTEGFDGV-DDGGVKDHMTAALQNLSELVSNCLAIFSASHDGD---DFAGVPIQNRRLLGVEEREEKFPRWMRPKEREILE 275          
BLAST of CK939370 vs. ExPASy Swiss-Prot
Match: PME61_ARATH (Probable pectinesterase/pectinesterase inhibitor 61 OS=Arabidopsis thaliana GN=PME61 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.616e-11
Identity = 55/231 (23.81%), Postives = 102/231 (44.16%), Query Frame = 3
Query:  201 IRSSCSATLYPELCFXXXXXXXXXXXXKVNSPKDVIRLSLNLTITAVQHNYFATKKLITTRKSTLTKREKTSLHDCLEMVDETLDELYKTEHELQGYPAAANNKSIAEQADELKILVSAAMTNQETCLDGFSH-ERADKKIREELMEGQMHVFHMCSNALAMIKNMTDGDIGKDIVDHYSKARRLDDETKWPEWLSAGDRRLL--QXXXXXXXXXXXXXGSGNYLTVAAAV 884
            I  +CS +LYP LC               N   ++I +S N T+       + +  +  T+   +  R +++   CLE++D+++D L +    L      + ++S ++    +   +S+AMTN +TC DGF   E    +++++++     +  M SN LA+         G  +V++  K    ++  + P WL   DR LL                GSG + T+A A+
Sbjct:   75 ISRTCSKSLYPNLCIDTLLDFPGSLTADEN---ELIHISFNATLQKFSKALYTSSTITYTQ---MPPRVRSAYDSCLELLDDSVDALTRA---LSSVVVVSGDESHSD----VMTWLSSAMTNHDTCTDGFDEIEGQGGEVKDQVIGAVKDLSEMVSNCLAIFAGKVKDLSGVPVVNN-RKLLGTEETEELPNWLKREDRELLGTPTSAIQADITVSKDGSGTFKTIAEAI 291          
The following BLAST results are available for this feature:
BLAST of CK939370 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
PME1_CITSI8.256e-6351.35Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE... [more]
PME3_CITSI2.402e-6250.97Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1[more]
PMEU1_SOLLC4.530e-6150.59Pectinesterase/pectinesterase inhibitor U1 OS=Sola... [more]
PME3_ARATH1.722e-6052.59Pectinesterase/pectinesterase inhibitor 3 OS=Arabi... [more]
PME2_ARATH2.327e-5751.44Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 P... [more]
21KD_DAUCA1.428e-1429.2721 kDa protein OS=Daucus carota PE=2 SV=1[more]
PME40_ARATH3.181e-1427.75Probable pectinesterase/pectinesterase inhibitor 4... [more]
PME45_ARATH1.132e-1128.22Putative pectinesterase/pectinesterase inhibitor 4... [more]
PME34_ARATH3.292e-1124.15Probable pectinesterase/pectinesterase inhibitor 3... [more]
PME61_ARATH5.616e-1123.81Probable pectinesterase/pectinesterase inhibitor 6... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004751_D07 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IIIF_D07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939370 ID=CK939370; Name=CK939370; organism=Citrus sinensis; type=EST; length=890bp
GGGGAATCACACGAAACCAAGCCTTATCAACAAAAATCTTTACCACAATG
GCACAACCCAGAAAGCTTTTCTTGGCTCTCTTTGCATTAGTCCTCGTAGT
CACTGCCGTTGTCACTATAATAGCCACCAGAAAGAACAACTCTAGCAACA
CAAATGATGAGCACATTGCGGCTCATGCTCATGCTTACGCTCACCCAGTT
ATCAGATCTTCCTGCAGTGCCACATTGTACCCAGAGCTATGCTTCTCAGC
ACTCTCCGCAGCTCCAGCTGCTGCAGTGTCAAAAGTGAACAGCCCAAAAG
ATGTGATACGACTGTCGCTCAACCTCACCATCACTGCAGTTCAACACAAC
TACTTCGCCACCAAGAAACTCATCACCACTCGCAAGAGCACGCTCACGAA
GCGTGAGAAGACTTCACTACACGACTGTCTCGAAATGGTCGATGAAACTC
TCGACGAGCTTTACAAAACTGAACATGAGCTTCAGGGTTATCCTGCAGCA
GCTAATAACAAGTCGATAGCTGAACAAGCTGATGAGTTAAAGATCCTTGT
GAGTGCTGCAATGACTAATCAAGAAACTTGCCTTGATGGGTTCTCCCACG
AGCGCGCTGATAAAAAGATCCGTGAAGAATTAATGGAGGGTCAAATGCAC
GTGTTTCACATGTGCAGCAATGCCTTGGCAATGATCAAGAACATGACTGA
TGGCGATATAGGCAAAGACATTGTTGATCATTACTCTAAAGCCCGGCGTC
TTGATGATGAAACGAAATGGCCTGAGTGGTTATCAGCTGGGGACAGGAGG
CTGCTGCAGGCGACAACGGTGGTACCTGATGTTACCGTGGCGGCTGATGG
AAGCGGTAACTACCTGACTGTGGCCGCGGCGGTGGCGGCT
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