CX675664

Overview
NameCX675664
Unique NameCX675664
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length498
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5593 contig Csv1_Contig5593:120..593. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675664 vs. ExPASy Swiss-Prot
Match: RL37A_ORYSJ (60S ribosomal protein L37a OS=Oryza sativa subsp. japonica GN=Os01g0679700 PE=1 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 1.624e-39
Identity = 77/80 (96.25%), Postives = 79/80 (98.75%), Query Frame = -1
Query:  259 KYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKSAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 498
            KYGTRYGASLRKQIKKMEVSQHSKYFCEFCGK AVKRKAVGIWGCKDCGKVKAGGAYT+NTASAVTVRSTIRRLREQTE+
Sbjct:   13 KYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKDCGKVKAGGAYTMNTASAVTVRSTIRRLREQTEA 92          
BLAST of CX675664 vs. ExPASy Swiss-Prot
Match: RL37A_GOSHI (60S ribosomal protein L37a OS=Gossypium hirsutum GN=RPL37A PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 3.618e-39
Identity = 78/80 (97.50%), Postives = 78/80 (97.50%), Query Frame = -1
Query:  259 KYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKSAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 498
            KYGTRYGASLRKQIKKMEVSQHSKYFCEFCGK AVKRKAVGIWGCK CGKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct:   13 KYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKACGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 92          
BLAST of CX675664 vs. ExPASy Swiss-Prot
Match: R37A1_ARATH (Putative 60S ribosomal protein L37a-1 OS=Arabidopsis thaliana GN=RPL37AB PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.053e-38
Identity = 75/80 (93.75%), Postives = 78/80 (97.50%), Query Frame = -1
Query:  259 KYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKSAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 498
            KYGTRYGASLRKQIKKMEVSQH+KYFCEFCGK +VKRK VGIWGCKDCGKVKAGGAYT+NTASAVTVRSTIRRLREQTES
Sbjct:   13 KYGTRYGASLRKQIKKMEVSQHNKYFCEFCGKYSVKRKVVGIWGCKDCGKVKAGGAYTMNTASAVTVRSTIRRLREQTES 92          
BLAST of CX675664 vs. ExPASy Swiss-Prot
Match: RL37A_PSEMZ (60S ribosomal protein L37a OS=Pseudotsuga menziesii GN=RPL37A PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 1.375e-38
Identity = 76/79 (96.20%), Postives = 77/79 (97.47%), Query Frame = -1
Query:  262 KYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKSAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 498
            KYGTRYGASLRKQIKKMEVSQHSK+FCEFCGK AVKRKAVGIWGCKDCGKVKAGGAYTLNT SAVTVRSTIRRLREQTE
Sbjct:   13 KYGTRYGASLRKQIKKMEVSQHSKFFCEFCGKFAVKRKAVGIWGCKDCGKVKAGGAYTLNTPSAVTVRSTIRRLREQTE 91          
BLAST of CX675664 vs. ExPASy Swiss-Prot
Match: R37A2_ARATH (60S ribosomal protein L37a-2 OS=Arabidopsis thaliana GN=RPL37AC PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 5.224e-38
Identity = 74/79 (93.67%), Postives = 76/79 (96.20%), Query Frame = -1
Query:  262 KYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKSAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 498
            KYGTRYGAS+RKQIKKMEVSQHSKYFCEFCGK  VKRKAVGIWGCKDCGKVKAGGAYT+NTASAVTVRSTIRRLREQ E
Sbjct:   13 KYGTRYGASIRKQIKKMEVSQHSKYFCEFCGKYGVKRKAVGIWGCKDCGKVKAGGAYTMNTASAVTVRSTIRRLREQIE 91          
BLAST of CX675664 vs. ExPASy Swiss-Prot
Match: RL37A_BRARA (60S ribosomal protein L37a OS=Brassica rapa GN=RPL37A PE=3 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 1.287e-36
Identity = 74/80 (92.50%), Postives = 76/80 (95.00%), Query Frame = -1
Query:  262 KYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKSAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRS-TIRRLREQTE 498
            KYGTRYGAS+RKQIKKMEVSQHSKYFCEFCGK  VKRKAVGIWGCKDCGKVKAGGAYT+NTASAVTVRS TIRRLREQ E
Sbjct:   13 KYGTRYGASIRKQIKKMEVSQHSKYFCEFCGKYGVKRKAVGIWGCKDCGKVKAGGAYTMNTASAVTVRSHTIRRLREQIE 92          
BLAST of CX675664 vs. ExPASy Swiss-Prot
Match: RL37A_OSTLU (60S ribosomal protein L37a OS=Ostreococcus lucimarinus (strain CCE9901) GN=RPL37a PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 2.126e-31
Identity = 62/79 (78.48%), Postives = 68/79 (86.08%), Query Frame = -1
Query:  262 KYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKSAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 498
            KYGTRYGASLRK +KK EVSQHSK+FC+FCGK  +KRKAVGIW CK C K KAGGAY+LNT  +VTVRSTIRRLRE TE
Sbjct:   13 KYGTRYGASLRKVVKKQEVSQHSKFFCDFCGKYGMKRKAVGIWSCKGCNKTKAGGAYSLNTGGSVTVRSTIRRLREATE 91          
BLAST of CX675664 vs. ExPASy Swiss-Prot
Match: RL37A_OSTTA (60S ribosomal protein L37a OS=Ostreococcus tauri GN=RPL37a PE=3 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 1.800e-30
Identity = 61/79 (77.22%), Postives = 68/79 (86.08%), Query Frame = -1
Query:  262 KYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKSAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 498
            KYGTRYGASLRK +KK EVSQHSK+FC+FCGK  +KR+AVGIW CK C K KAGGAY+LNT  +VTVRSTIRRLRE TE
Sbjct:   13 KYGTRYGASLRKVVKKTEVSQHSKFFCDFCGKYGMKRQAVGIWCCKGCNKTKAGGAYSLNTGGSVTVRSTIRRLREATE 91          
BLAST of CX675664 vs. ExPASy Swiss-Prot
Match: RL37A_CRYST (60S ribosomal protein L37a OS=Cryptochiton stelleri GN=RPL37A PE=3 SV=3)

HSP 1 Score: 127.872 bits (320), Expect = 2.599e-29
Identity = 58/80 (72.50%), Postives = 68/80 (85.00%), Query Frame = -1
Query:  259 KYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKSAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 498
            KYGTRYGASLRK +KKME++QHSKY C+FCGK A+KR+AVGIWGCK C KV AGGA+  +T +AVTVRS +RRLRE  ES
Sbjct:   13 KYGTRYGASLRKTVKKMEITQHSKYTCQFCGKDAMKRQAVGIWGCKSCRKVVAGGAWVYSTMAAVTVRSAVRRLREMKES 92          
BLAST of CX675664 vs. ExPASy Swiss-Prot
Match: RL43_ASHGO (60S ribosomal protein L43 OS=Ashbya gossypii GN=RPL43 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 5.418e-27
Identity = 54/80 (67.50%), Postives = 63/80 (78.75%), Query Frame = -1
Query:  259 KYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKSAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 498
            KYG RYG+SLR+Q+KK+EV QH++Y C FCGK AVKR A GIW C  C K  AGGAYT +TA+A TVRSTIRRLRE  E+
Sbjct:   13 KYGVRYGSSLRRQVKKLEVQQHARYDCSFCGKKAVKRGAAGIWNCSSCKKTVAGGAYTFSTAAAATVRSTIRRLREMAEA 92          
The following BLAST results are available for this feature:
BLAST of CX675664 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
RL37A_ORYSJ1.624e-3996.2560S ribosomal protein L37a OS=Oryza sativa subsp. ... [more]
RL37A_GOSHI3.618e-3997.5060S ribosomal protein L37a OS=Gossypium hirsutum G... [more]
R37A1_ARATH1.053e-3893.75Putative 60S ribosomal protein L37a-1 OS=Arabidops... [more]
RL37A_PSEMZ1.375e-3896.2060S ribosomal protein L37a OS=Pseudotsuga menziesi... [more]
R37A2_ARATH5.224e-3893.6760S ribosomal protein L37a-2 OS=Arabidopsis thalia... [more]
RL37A_BRARA1.287e-3692.5060S ribosomal protein L37a OS=Brassica rapa GN=RPL... [more]
RL37A_OSTLU2.126e-3178.4860S ribosomal protein L37a OS=Ostreococcus lucimar... [more]
RL37A_OSTTA1.800e-3077.2260S ribosomal protein L37a OS=Ostreococcus tauri G... [more]
RL37A_CRYST2.599e-2972.5060S ribosomal protein L37a OS=Cryptochiton steller... [more]
RL43_ASHGO5.418e-2767.5060S ribosomal protein L43 OS=Ashbya gossypii GN=RP... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_63H03_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-63H03-O5-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675664 ID=CX675664; Name=CX675664; organism=Citrus sinensis; type=EST; length=498bp
TTTTTTTTTTATAAAACAATTTAATCAACCCACTAGATAACATAATTTCA
TAGGAAAACCCACTAGATAACATAATTTCATAGGAAAAATAGCGAATGAA
CATCTCAAGAGTCAAAACACAGCCGAAAGTTTCATGTTCCAACAACCAAT
TGTTTTGCATCTAGAAATAAAGCAACATCAAAAATGATTTAAGGTTGTAT
CCGAAACTAAAGATCAAACGACCTAAGACACGGGAGTAAGCCAATGGTGG
CAAGCTCAGCTTTCAGTTTGCTCCCTCAACCTACGGATTGTGCTCCTCAC
AGTCACAGCACTAGCAGTGTTCAAAGTGTAGGCACCGCCGGCCTTGACTT
TCCCACAGTCCTTGCAGCCCCAAATGCCAACAGCTTTCCTCTTCACCGCA
GACTTCCCGCAAAATTCGCAGAAATATTTGCTATGCTGACTAACCTCCAT
CTTCTTAATTTGCTTCCTCAAACTGGCACCATAACGGGTACCATACTT
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