CX675663

Overview
NameCX675663
Unique NameCX675663
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length498
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5593 contig Csv1_Contig5593:119..593. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675663 vs. ExPASy Swiss-Prot
Match: RL37A_GOSHI (60S ribosomal protein L37a OS=Gossypium hirsutum GN=RPL37A PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 7.163e-40
Identity = 78/80 (97.50%), Postives = 79/80 (98.75%), Query Frame = 2
Query:    2 KYGTRYGASLRKQIKKMEVSQHSRYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 241
            KYGTRYGASLRKQIKKMEVSQHS+YFCEFCGKYAVKRKAVGIWGCK CGKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct:   13 KYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKACGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 92          
BLAST of CX675663 vs. ExPASy Swiss-Prot
Match: RL37A_ORYSJ (60S ribosomal protein L37a OS=Oryza sativa subsp. japonica GN=Os01g0679700 PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 9.356e-40
Identity = 76/80 (95.00%), Postives = 80/80 (100.00%), Query Frame = 2
Query:    2 KYGTRYGASLRKQIKKMEVSQHSRYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 241
            KYGTRYGASLRKQIKKMEVSQHS+YFCEFCGK+AVKRKAVGIWGCKDCGKVKAGGAYT+NTASAVTVRSTIRRLREQTE+
Sbjct:   13 KYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKDCGKVKAGGAYTMNTASAVTVRSTIRRLREQTEA 92          
BLAST of CX675663 vs. ExPASy Swiss-Prot
Match: R37A1_ARATH (Putative 60S ribosomal protein L37a-1 OS=Arabidopsis thaliana GN=RPL37AB PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 2.084e-39
Identity = 75/80 (93.75%), Postives = 79/80 (98.75%), Query Frame = 2
Query:    2 KYGTRYGASLRKQIKKMEVSQHSRYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 241
            KYGTRYGASLRKQIKKMEVSQH++YFCEFCGKY+VKRK VGIWGCKDCGKVKAGGAYT+NTASAVTVRSTIRRLREQTES
Sbjct:   13 KYGTRYGASLRKQIKKMEVSQHNKYFCEFCGKYSVKRKVVGIWGCKDCGKVKAGGAYTMNTASAVTVRSTIRRLREQTES 92          
BLAST of CX675663 vs. ExPASy Swiss-Prot
Match: RL37A_PSEMZ (60S ribosomal protein L37a OS=Pseudotsuga menziesii GN=RPL37A PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 7.920e-39
Identity = 75/79 (94.94%), Postives = 78/79 (98.73%), Query Frame = 2
Query:    2 KYGTRYGASLRKQIKKMEVSQHSRYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 238
            KYGTRYGASLRKQIKKMEVSQHS++FCEFCGK+AVKRKAVGIWGCKDCGKVKAGGAYTLNT SAVTVRSTIRRLREQTE
Sbjct:   13 KYGTRYGASLRKQIKKMEVSQHSKFFCEFCGKFAVKRKAVGIWGCKDCGKVKAGGAYTLNTPSAVTVRSTIRRLREQTE 91          
BLAST of CX675663 vs. ExPASy Swiss-Prot
Match: R37A2_ARATH (60S ribosomal protein L37a-2 OS=Arabidopsis thaliana GN=RPL37AC PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.034e-38
Identity = 74/79 (93.67%), Postives = 77/79 (97.47%), Query Frame = 2
Query:    2 KYGTRYGASLRKQIKKMEVSQHSRYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 238
            KYGTRYGAS+RKQIKKMEVSQHS+YFCEFCGKY VKRKAVGIWGCKDCGKVKAGGAYT+NTASAVTVRSTIRRLREQ E
Sbjct:   13 KYGTRYGASIRKQIKKMEVSQHSKYFCEFCGKYGVKRKAVGIWGCKDCGKVKAGGAYTMNTASAVTVRSTIRRLREQIE 91          
BLAST of CX675663 vs. ExPASy Swiss-Prot
Match: RL37A_BRARA (60S ribosomal protein L37a OS=Brassica rapa GN=RPL37A PE=3 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 2.548e-37
Identity = 74/80 (92.50%), Postives = 77/80 (96.25%), Query Frame = 2
Query:    2 KYGTRYGASLRKQIKKMEVSQHSRYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRS-TIRRLREQTE 238
            KYGTRYGAS+RKQIKKMEVSQHS+YFCEFCGKY VKRKAVGIWGCKDCGKVKAGGAYT+NTASAVTVRS TIRRLREQ E
Sbjct:   13 KYGTRYGASIRKQIKKMEVSQHSKYFCEFCGKYGVKRKAVGIWGCKDCGKVKAGGAYTMNTASAVTVRSHTIRRLREQIE 92          
BLAST of CX675663 vs. ExPASy Swiss-Prot
Match: RL37A_OSTLU (60S ribosomal protein L37a OS=Ostreococcus lucimarinus (strain CCE9901) GN=RPL37a PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 4.209e-32
Identity = 62/79 (78.48%), Postives = 69/79 (87.34%), Query Frame = 2
Query:    2 KYGTRYGASLRKQIKKMEVSQHSRYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 238
            KYGTRYGASLRK +KK EVSQHS++FC+FCGKY +KRKAVGIW CK C K KAGGAY+LNT  +VTVRSTIRRLRE TE
Sbjct:   13 KYGTRYGASLRKVVKKQEVSQHSKFFCDFCGKYGMKRKAVGIWSCKGCNKTKAGGAYSLNTGGSVTVRSTIRRLREATE 91          
BLAST of CX675663 vs. ExPASy Swiss-Prot
Match: RL37A_OSTTA (60S ribosomal protein L37a OS=Ostreococcus tauri GN=RPL37a PE=3 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 3.563e-31
Identity = 61/79 (77.22%), Postives = 69/79 (87.34%), Query Frame = 2
Query:    2 KYGTRYGASLRKQIKKMEVSQHSRYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 238
            KYGTRYGASLRK +KK EVSQHS++FC+FCGKY +KR+AVGIW CK C K KAGGAY+LNT  +VTVRSTIRRLRE TE
Sbjct:   13 KYGTRYGASLRKVVKKTEVSQHSKFFCDFCGKYGMKRQAVGIWCCKGCNKTKAGGAYSLNTGGSVTVRSTIRRLREATE 91          
BLAST of CX675663 vs. ExPASy Swiss-Prot
Match: RL37A_CRYST (60S ribosomal protein L37a OS=Cryptochiton stelleri GN=RPL37A PE=3 SV=3)

HSP 1 Score: 125.561 bits (314), Expect = 1.267e-28
Identity = 57/80 (71.25%), Postives = 68/80 (85.00%), Query Frame = 2
Query:    2 KYGTRYGASLRKQIKKMEVSQHSRYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 241
            KYGTRYGASLRK +KKME++QHS+Y C+FCGK A+KR+AVGIWGCK C KV AGGA+  +T +AVTVRS +RRLRE  ES
Sbjct:   13 KYGTRYGASLRKTVKKMEITQHSKYTCQFCGKDAMKRQAVGIWGCKSCRKVVAGGAWVYSTMAAVTVRSAVRRLREMKES 92          
BLAST of CX675663 vs. ExPASy Swiss-Prot
Match: RL43_ASHGO (60S ribosomal protein L43 OS=Ashbya gossypii GN=RPL43 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 4.077e-27
Identity = 55/80 (68.75%), Postives = 63/80 (78.75%), Query Frame = 2
Query:    2 KYGTRYGASLRKQIKKMEVSQHSRYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 241
            KYG RYG+SLR+Q+KK+EV QH+RY C FCGK AVKR A GIW C  C K  AGGAYT +TA+A TVRSTIRRLRE  E+
Sbjct:   13 KYGVRYGSSLRRQVKKLEVQQHARYDCSFCGKKAVKRGAAGIWNCSSCKKTVAGGAYTFSTAAAATVRSTIRRLREMAEA 92          
The following BLAST results are available for this feature:
BLAST of CX675663 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
RL37A_GOSHI7.163e-4097.5060S ribosomal protein L37a OS=Gossypium hirsutum G... [more]
RL37A_ORYSJ9.356e-4095.0060S ribosomal protein L37a OS=Oryza sativa subsp. ... [more]
R37A1_ARATH2.084e-3993.75Putative 60S ribosomal protein L37a-1 OS=Arabidops... [more]
RL37A_PSEMZ7.920e-3994.9460S ribosomal protein L37a OS=Pseudotsuga menziesi... [more]
R37A2_ARATH1.034e-3893.6760S ribosomal protein L37a-2 OS=Arabidopsis thalia... [more]
RL37A_BRARA2.548e-3792.5060S ribosomal protein L37a OS=Brassica rapa GN=RPL... [more]
RL37A_OSTLU4.209e-3278.4860S ribosomal protein L37a OS=Ostreococcus lucimar... [more]
RL37A_OSTTA3.563e-3177.2260S ribosomal protein L37a OS=Ostreococcus tauri G... [more]
RL37A_CRYST1.267e-2871.2560S ribosomal protein L37a OS=Cryptochiton steller... [more]
RL43_ASHGO4.077e-2768.7560S ribosomal protein L43 OS=Ashbya gossypii GN=RP... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_63H03_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-63H03-O5-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675663 ID=CX675663; Name=CX675663; organism=Citrus sinensis; type=EST; length=498bp
AAAGTATGGTACCCGTTATGGTGCCAGTTTGAGGAAGCAAATTAAGAAGA
TGGAGGTTAGTCAGCATAGCAGATATTTCTGCGAATTTTGCGGGAAGTAT
GCGGTGAAGAGGAAAGCTGTTGGCATTTGGGGCTGCAAGGACTGTGGGAA
AGTCAAGGCAGGCGGTGCCTACACTTTGAACACTGCTAGTGCTGTGACTG
TGAGGAGCACAATCCGTAGGTTGAGGGAGCAAACTGAAAGCTGAGCTTGC
CACCATTGGCTTACTCCCGTGTCTTAGGTCGTTTGATCTTTAGTTTCGGA
TACAACCTTAAATCATTTTTGATGTTGCTTTATTTCTAGATGCAAAACAA
TTGGTTGTTGGAACATGAAACTTTTGGCTGTGTTTTGACTCTTGAGATGT
TCATTCGCTATTTTTCCTATGAAATTATGTTATCTAGTGGGTTTTCCTAT
GAAATTATGTTATCTAGTGGGTTGATTAAATTGTTTTATAAAAAAAAA
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