CX675662

Overview
NameCX675662
Unique NameCX675662
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length665
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4852 contig Csv1_Contig4852:21..685. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675662 vs. ExPASy Swiss-Prot
Match: HBP2_CASGL (Hemoglobin-2 OS=Casuarina glauca GN=HBII PE=3 SV=1)

HSP 1 Score: 272.322 bits (695), Expect = 1.556e-72
Identity = 135/156 (86.54%), Postives = 147/156 (94.23%), Query Frame = -2
Query:  164 EGRAFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKTHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEAVPEMWSPEMKSAWSEAYDQLVAAIKSEMKPSS 631
            EGR FTEEQEALVVKSW+ MK NAGELGLKFFL+IFEIAPSAQKLFSFL+DSNVPLE+N KLK+HAMSVF+MTCESAVQLRKAGKVTVRES+LKKLGA HFK+GV +EHFEVTKF+LLETIKEAVPE WSPEMK+AW EAYD+LVAAIK EMKPSS
Sbjct:    5 EGRGFTEEQEALVVKSWSAMKPNAGELGLKFFLKIFEIAPSAQKLFSFLKDSNVPLERNPKLKSHAMSVFLMTCESAVQLRKAGKVTVRESSLKKLGASHFKHGVADEHFEVTKFALLETIKEAVPETWSPEMKNAWGEAYDKLVAAIKLEMKPSS 160          
BLAST of CX675662 vs. ExPASy Swiss-Prot
Match: HBL1_MEDSA (Non-symbiotic hemoglobin 1 OS=Medicago sativa GN=MHB1 PE=2 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 5.005e-71
Identity = 133/154 (86.36%), Postives = 143/154 (92.86%), Query Frame = -2
Query:  164 RAFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKTHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEAVPEMWSPEMKSAWSEAYDQLVAAIKSEMKPSS 625
            + FTEEQEALVVKSWN MKKN+ ELGLK FL+IFEIAPSAQKLFSFL+DS VPLEQN KLK HAMSVF+MTCESAVQLRK+GKVTVRES+LKKLGA HFKYGVV+EHFEVTKF+LLETIKEAVPEMWSP MK+AW EAYDQLV AIKSEMKPSS
Sbjct:    7 KGFTEEQEALVVKSWNAMKKNSAELGLKLFLKIFEIAPSAQKLFSFLKDSKVPLEQNTKLKPHAMSVFLMTCESAVQLRKSGKVTVRESSLKKLGANHFKYGVVDEHFEVTKFALLETIKEAVPEMWSPAMKNAWGEAYDQLVNAIKSEMKPSS 160          
BLAST of CX675662 vs. ExPASy Swiss-Prot
Match: HBL1_GOSHI (Non-symbiotic hemoglobin 1 OS=Gossypium hirsutum GN=HB1 PE=2 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 6.537e-71
Identity = 134/156 (85.90%), Postives = 142/156 (91.03%), Query Frame = -2
Query:  164 EGRAFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKTHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEAVPEMWSPEMKSAWSEAYDQLVAAIKSEMKPSS 631
            EG+ FTEEQEALVVKSW VMKK   ELGLKFFL+IFEIAPSA+KLFSFLRDSNVPLEQN KLK HAMSVFVMTCESAVQLRKAGKVTVRES LKKLGA HFKYGVV+EHFEVTKF+LLETIKEAVP+MWS EMK+AW EAYD+LVAAIK EMK  S
Sbjct:    5 EGKVFTEEQEALVVKSWTVMKKKTAELGLKFFLKIFEIAPSAKKLFSFLRDSNVPLEQNTKLKPHAMSVFVMTCESAVQLRKAGKVTVRESNLKKLGATHFKYGVVDEHFEVTKFALLETIKEAVPDMWSDEMKNAWGEAYDRLVAAIKIEMKACS 160          
BLAST of CX675662 vs. ExPASy Swiss-Prot
Match: HBL_TRETO (Non-symbiotic hemoglobin OS=Trema tomentosa GN=GLB1 PE=2 SV=1)

HSP 1 Score: 260.766 bits (665), Expect = 4.685e-69
Identity = 131/161 (81.37%), Postives = 146/161 (90.68%), Query Frame = -2
Query:  164 MANINEGRAFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKTHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEAVPEMWSPEMKSAWSEAYDQLVAAIKSEMKPSS 646
            M++    + FTEEQEALVVKSW VMKKN+ ELGLKFFL+IFEIAPSA+ LFS+L+DS +PLEQN KLK HAM+VFVMTCESAVQLRKAGKVTVRES LK+LGA+HFK GVVNEHFE T+F+LLETIKEAVPEMWSPEMK+AW EAYDQLVAAIKSEMKPSS
Sbjct:    1 MSSSEVDKVFTEEQEALVVKSWAVMKKNSAELGLKFFLKIFEIAPSAKNLFSYLKDSPIPLEQNPKLKPHAMTVFVMTCESAVQLRKAGKVTVRESNLKRLGAIHFKNGVVNEHFE-TRFALLETIKEAVPEMWSPEMKNAWGEAYDQLVAAIKSEMKPSS 160          
BLAST of CX675662 vs. ExPASy Swiss-Prot
Match: HBPL_PARRI (Non-legume hemoglobin OS=Parasponia rigida PE=1 SV=2)

HSP 1 Score: 253.832 bits (647), Expect = 5.727e-67
Identity = 125/161 (77.64%), Postives = 143/161 (88.82%), Query Frame = -2
Query:  164 MANINEGRAFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKTHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEAVPEMWSPEMKSAWSEAYDQLVAAIKSEMKPSS 646
            M++    + FTEEQEALVVK+W VMKKN+ ELGL+FFL+IFEIAPSA+ LFS+L+DS VPLEQN KLK HA +VFVMTCESAVQLRKAGK TV+ES LK++GA+HFK GVVNEHFEVT+F+LLETIKEAVPEMWSPEMK+AW  AYDQLVAAIK EMKPSS
Sbjct:    1 MSSSEVNKVFTEEQEALVVKAWAVMKKNSAELGLQFFLKIFEIAPSAKNLFSYLKDSPVPLEQNPKLKPHATTVFVMTCESAVQLRKAGKATVKESDLKRIGAIHFKTGVVNEHFEVTRFALLETIKEAVPEMWSPEMKNAWGVAYDQLVAAIKFEMKPSS 161          
BLAST of CX675662 vs. ExPASy Swiss-Prot
Match: HBPL_PARAD (Non-legume hemoglobin OS=Parasponia andersonii PE=1 SV=2)

HSP 1 Score: 253.832 bits (647), Expect = 5.727e-67
Identity = 125/161 (77.64%), Postives = 143/161 (88.82%), Query Frame = -2
Query:  164 MANINEGRAFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKTHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEAVPEMWSPEMKSAWSEAYDQLVAAIKSEMKPSS 646
            M++    + FTEEQEALVVK+W VMKKN+ ELGL+FFL+IFEIAPSA+ LFS+L+DS VPLEQN KLK HA +VFVMTCESAVQLRKAGK TV+ES LK++GA+HFK GVVNEHFEVT+F+LLETIKEAVPEMWSPEMK+AW  AYDQLVAAIK EMKPSS
Sbjct:    1 MSSSEVNKVFTEEQEALVVKAWAVMKKNSAELGLQFFLKIFEIAPSAKNLFSYLKDSPVPLEQNPKLKPHATTVFVMTCESAVQLRKAGKATVKESDLKRIGAIHFKTGVVNEHFEVTRFALLETIKEAVPEMWSPEMKNAWGVAYDQLVAAIKFEMKPSS 161          
BLAST of CX675662 vs. ExPASy Swiss-Prot
Match: HBL1_ARATH (Non-symbiotic hemoglobin 1 OS=Arabidopsis thaliana GN=AHB1 PE=1 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 7.740e-64
Identity = 121/158 (76.58%), Postives = 139/158 (87.97%), Query Frame = -2
Query:  164 NEGR-AFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKTHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEAVPEMWSPEMKSAWSEAYDQLVAAIKSEMKPSS 634
            +EG+  FTEEQEALVVKSW+VMKKN+ ELGLK F++IFEIAP+ +K+FSFLRDS +P EQN KLK HAMSVFVM CESAVQLRK GKVTVRE+TLK+LGA H KYGVV+EHFEV K++LLETIKEAVPEMWSPEMK AW +AYD LVAAIK+EM  S+
Sbjct:    3 SEGKIVFTEEQEALVVKSWSVMKKNSAELGLKLFIKIFEIAPTTKKMFSFLRDSPIPAEQNPKLKPHAMSVFVMCCESAVQLRKTGKVTVRETTLKRLGASHSKYGVVDEHFEVAKYALLETIKEAVPEMWSPEMKVAWGQAYDHLVAAIKAEMNLSN 160          
BLAST of CX675662 vs. ExPASy Swiss-Prot
Match: HBL2_ORYSJ (Non-symbiotic hemoglobin 2 OS=Oryza sativa subsp. japonica GN=HB2 PE=2 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 6.552e-63
Identity = 116/153 (75.82%), Postives = 141/153 (92.16%), Query Frame = -2
Query:  167 AFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKTHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEAVP-EMWSPEMKSAWSEAYDQLVAAIKSEMKPS 622
            +F+EEQEALV+KSW +MKK++  +GL+FFL+IFE+APSA ++FSFLR+S+VPLE+N KLKTHAMSVFVMTCE+A QLRKAGKVTVR++TLK+LGA HFKYGV + HFEVT+F+LLETIKEAVP +MWSP MKSAWSEAY+QLVAAIK EMKP+
Sbjct:   16 SFSEEQEALVLKSWAIMKKDSANIGLRFFLKIFEVAPSASQMFSFLRNSDVPLEKNPKLKTHAMSVFVMTCEAAAQLRKAGKVTVRDTTLKRLGATHFKYGVGDAHFEVTRFALLETIKEAVPVDMWSPAMKSAWSEAYNQLVAAIKQEMKPA 168          
BLAST of CX675662 vs. ExPASy Swiss-Prot
Match: HBL_MAIZE (Non-symbiotic hemoglobin OS=Zea mays GN=HB PE=2 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 2.108e-61
Identity = 118/164 (71.95%), Postives = 142/164 (86.59%), Query Frame = -2
Query:  164 SMANINEGRA-FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKTHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEAVP-EMWSPEMKSAWSEAYDQLVAAIKSEMKPSS 649
            ++A  ++G   F EEQEALV+KSW VMKK+A  LGL+FFL++FEIAPSA+++FSFLRDS+VPLE+N KLKTHAMSVFVMTCE+A QLRKAGKVTVRE+TLK+LGA H +YGV + HFEVT F+LLETIKEA+P +MWS EMK AW+EAY QLVAAIK EMKP +
Sbjct:    2 ALAEADDGAVVFGEEQEALVLKSWAVMKKDAANLGLRFFLKVFEIAPSAEQMFSFLRDSDVPLEKNPKLKTHAMSVFVMTCEAAAQLRKAGKVTVRETTLKRLGATHLRYGVADGHFEVTGFALLETIKEALPADMWSLEMKKAWAEAYSQLVAAIKREMKPDA 165          
BLAST of CX675662 vs. ExPASy Swiss-Prot
Match: HBL_ZEAMP (Non-symbiotic hemoglobin OS=Zea mays subsp. parviglumis GN=HB PE=1 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 2.753e-61
Identity = 118/164 (71.95%), Postives = 142/164 (86.59%), Query Frame = -2
Query:  164 SMANINEGRA-FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKTHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEAVP-EMWSPEMKSAWSEAYDQLVAAIKSEMKPSS 649
            ++A  ++G   F EEQEALV+KSW VMKK+A  LGL+FFL++FEIAPSA+++FSFLRDS+VPLE+N KLKTHAMSVFVMTCE+A QLRKAGKVTVRE+TLK+LGA H +YGV + HFEVT F+LLETIKEA+P +MWS EMK AW+EAY QLVAAIK EMKP +
Sbjct:    2 ALAEADDGAVVFGEEQEALVLKSWAVMKKDAANLGLRFFLKVFEIAPSAKQMFSFLRDSDVPLEKNPKLKTHAMSVFVMTCEAAAQLRKAGKVTVRETTLKRLGATHLRYGVADGHFEVTGFALLETIKEALPADMWSLEMKKAWAEAYSQLVAAIKREMKPDA 165          
The following BLAST results are available for this feature:
BLAST of CX675662 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
HBP2_CASGL1.556e-7286.54Hemoglobin-2 OS=Casuarina glauca GN=HBII PE=3 SV=1[more]
HBL1_MEDSA5.005e-7186.36Non-symbiotic hemoglobin 1 OS=Medicago sativa GN=M... [more]
HBL1_GOSHI6.537e-7185.90Non-symbiotic hemoglobin 1 OS=Gossypium hirsutum G... [more]
HBL_TRETO4.685e-6981.37Non-symbiotic hemoglobin OS=Trema tomentosa GN=GLB... [more]
HBPL_PARRI5.727e-6777.64Non-legume hemoglobin OS=Parasponia rigida PE=1 SV... [more]
HBPL_PARAD5.727e-6777.64Non-legume hemoglobin OS=Parasponia andersonii PE=... [more]
HBL1_ARATH7.740e-6476.58Non-symbiotic hemoglobin 1 OS=Arabidopsis thaliana... [more]
HBL2_ORYSJ6.552e-6375.82Non-symbiotic hemoglobin 2 OS=Oryza sativa subsp. ... [more]
HBL_MAIZE2.108e-6171.95Non-symbiotic hemoglobin OS=Zea mays GN=HB PE=2 SV... [more]
HBL_ZEAMP2.753e-6171.95Non-symbiotic hemoglobin OS=Zea mays subsp. parvig... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_63H01_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-63H01-O1-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675662 ID=CX675662; Name=CX675662; organism=Citrus sinensis; type=EST; length=665bp
AACAAACTTTTGTTATTAAGATTCAAGAGTTGAACACAAGAGATTATACA
AAAAGGCACAAGAAACACACGTGGGTACCAATGCAAAGATTAACAAATAA
ACAATGCTCTTTTTGAAATTCTTTAATATTACAGGGGAAGAGAAATTTGT
TCAGGAAACTCTAAGAGGAGGGCTTCATCTCCGACTTAATGGCTGCAACC
AATTGGTCGTAAGCTTCTGACCAGGCACTCTTCATTTCTGGCGACCACAT
CTCTGGTACTGCCTCTTTTATGGTTTCCAGTAGTGAAAATTTTGTGACCT
CAAAATGCTCATTAACAACACCATATTTGAAGTGGACAGCTCCTAATTTT
TTTAGAGTTGATTCTCTTACTGTCACTTTGCCTGCTTTCCTCAGTTGCAC
TGCTGATTCACACGTCATAACAAAAACAGACATGGCATGGGTCTTGAGCT
TCTGGTTCTGCTCTAGAGGCACATTTGAGTCTCTCAAGAATGAGAACAGC
TTTTGGGCTGATGGTGCAATCTCAAAGATCCTCAAGAAGAATTTAAGACC
CAATTCTCCAGCATTCTTCTTCATTACATTCCATGACTTGACAACTAAAG
CTTCTTGCTCTTCAGTAAAGGCTCTACCTTCGTTAATGTTGGCCATTGAT
TTCTATTTGGACACC
back to top