CK939353

Overview
NameCK939353
Unique NameCK939353
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length879
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig472 contig Csv1_Contig472:63..942. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK939353 vs. ExPASy Swiss-Prot
Match: PX11D_ARATH (Peroxisomal membrane protein 11D OS=Arabidopsis thaliana GN=PEX11D PE=1 SV=2)

HSP 1 Score: 276.559 bits (706), Expect = 9.011e-101
Identity = 137/151 (90.73%), Postives = 147/151 (97.35%), Query Frame = 1
Query:   85 STLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVFRLFKFVNDLHALISPVPQGTLLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAELLGRISLFCWMGSSVCSTLVELGELGRLSTSM 537
            +TLD +RAELALVV+YLNKAEARDK+CRAIQYGSKFLS GQPGTAQNVDKSTSLARKVFRLFKFVNDLH LISPVP+GT LPLVLLGKSKNALLSTFLFLDQ+VWLGRSGIYKNKERAELLGRISLFCWMGSSVC+TLVE+GE+GRLS+SM
Sbjct:    3 TTLDVSRAELALVVMYLNKAEARDKLCRAIQYGSKFLSGGQPGTAQNVDKSTSLARKVFRLFKFVNDLHGLISPVPKGTPLPLVLLGKSKNALLSTFLFLDQIVWLGRSGIYKNKERAELLGRISLFCWMGSSVCTTLVEVGEMGRLSSSM 153          

HSP 2 Score: 112.849 bits (281), Expect = 9.011e-101
Identity = 55/69 (79.71%), Postives = 61/69 (88.41%), Query Frame = 3
Query:  579 NEQYQAKLKKSNERSLALVKSAMDIVVAVGLLQLAPKKVTPRVTGAFGFVTSLISCYQLLPAPVKAKAP 785
            +E Y+AKLKKSNERSLAL+KSAMDIVVA GLLQLAP K+TPRVTGAFGF+TS+ISCYQLLP   K K P
Sbjct:  168 DEDYRAKLKKSNERSLALIKSAMDIVVAAGLLQLAPTKITPRVTGAFGFITSIISCYQLLPTRPKIKTP 236          
BLAST of CK939353 vs. ExPASy Swiss-Prot
Match: PX11C_ARATH (Peroxisomal membrane protein 11C OS=Arabidopsis thaliana GN=PEX11C PE=1 SV=1)

HSP 1 Score: 275.018 bits (702), Expect = 2.191e-99
Identity = 136/152 (89.47%), Postives = 148/152 (97.37%), Query Frame = 1
Query:   82 MSTLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVFRLFKFVNDLHALISPVPQGTLLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAELLGRISLFCWMGSSVCSTLVELGELGRLSTSM 537
            MSTL+ TRAEL LVV+YLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDK+TSLARKVFRLFKFVNDLHALISPVP+GT LPLVLLGKSKNALLSTFLFLDQ+VWLGR+GIYK+KERAE+LGRISLFCWMGSSVC++LVE+GELGRLS S+
Sbjct:    1 MSTLETTRAELGLVVVYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKNTSLARKVFRLFKFVNDLHALISPVPKGTPLPLVLLGKSKNALLSTFLFLDQIVWLGRTGIYKDKERAEILGRISLFCWMGSSVCTSLVEVGELGRLSASI 152          

HSP 2 Score: 109.768 bits (273), Expect = 2.191e-99
Identity = 53/67 (79.10%), Postives = 62/67 (92.54%), Query Frame = 3
Query:  579 NEQYQAKLKKSNERSLALVKSAMDIVVAVGLLQLAPKKVTPRVTGAFGFVTSLISCYQLLPAPVKAK 779
            NEQY+AK++KSNERSLAL+K+ MD+VVA GLLQLAPKKVTPRVTGAFGF +SLISCYQLLP+  K+K
Sbjct:  167 NEQYRAKVEKSNERSLALIKAGMDVVVAFGLLQLAPKKVTPRVTGAFGFASSLISCYQLLPSHPKSK 233          
BLAST of CK939353 vs. ExPASy Swiss-Prot
Match: PX11E_ARATH (Peroxisomal membrane protein 11E OS=Arabidopsis thaliana GN=PEX11E PE=1 SV=1)

HSP 1 Score: 270.781 bits (691), Expect = 4.472e-97
Identity = 134/152 (88.16%), Postives = 144/152 (94.74%), Query Frame = 1
Query:   82 MSTLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVFRLFKFVNDLHALISPVPQGTLLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAELLGRISLFCWMGSSVCSTLVELGELGRLSTSM 537
            M+TLD TRAELAL+VLYLNKAEARDKICRAIQYGSKFLS GQPGTAQ VDK+TSLARKVFRLFKFVND H LISPVP+GT LPLVLLGKSKNALLSTFLFLDQ+VWLGRSGIYKNKER ELLGRISLFCW+GSSVC++ VE+GELGRLS+SM
Sbjct:    1 MTTLDLTRAELALIVLYLNKAEARDKICRAIQYGSKFLSGGQPGTAQTVDKNTSLARKVFRLFKFVNDFHGLISPVPKGTPLPLVLLGKSKNALLSTFLFLDQIVWLGRSGIYKNKERTELLGRISLFCWLGSSVCTSAVEIGELGRLSSSM 152          

HSP 2 Score: 106.301 bits (264), Expect = 4.472e-97
Identity = 50/69 (72.46%), Postives = 62/69 (89.86%), Query Frame = 3
Query:  579 NEQYQAKLKKSNERSLALVKSAMDIVVAVGLLQLAPKKVTPRVTGAFGFVTSLISCYQLLPAPVKAKAP 785
            +E Y+AKL+KSN+R+LAL+KS+MDI+VA+GLLQLAPK ++PRVTGAFGF TSLISCYQLLP+  K K P
Sbjct:  163 DELYRAKLQKSNDRTLALIKSSMDIIVAIGLLQLAPKTISPRVTGAFGFTTSLISCYQLLPSRPKLKTP 231          
BLAST of CK939353 vs. ExPASy Swiss-Prot
Match: PX115_ORYSJ (Peroxisomal membrane protein 11-5 OS=Oryza sativa subsp. japonica GN=PEX11-5 PE=2 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 3.788e-90
Identity = 116/152 (76.32%), Postives = 139/152 (91.45%), Query Frame = 1
Query:   82 MSTLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVFRLFKFVNDLHALISPVPQGTLLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAELLGRISLFCWMGSSVCSTLVELGELGRLSTSM 537
            MS+L++ RA+LAL++LYLNKAEARDKICRAIQYGSKF+S+GQPG AQNVDKSTSLARKVFRLFKFVNDLHALISP  +GT LPL+LLGKSKNALLSTFLFLDQ+VW GR+GIYKNKERAE L +I+ +C++GS+ C++++E+ EL RLS SM
Sbjct:    1 MSSLESARADLALLILYLNKAEARDKICRAIQYGSKFVSNGQPGPAQNVDKSTSLARKVFRLFKFVNDLHALISPPAKGTPLPLILLGKSKNALLSTFLFLDQIVWAGRTGIYKNKERAEFLSKIAFYCFLGSNTCTSIIEVAELQRLSKSM 152          

HSP 2 Score: 113.235 bits (282), Expect = 3.788e-90
Identity = 54/67 (80.60%), Postives = 62/67 (92.54%), Query Frame = 3
Query:  579 NEQYQAKLKKSNERSLALVKSAMDIVVAVGLLQLAPKKVTPRVTGAFGFVTSLISCYQLLPAPVKAK 779
            NEQYQ KL+K NER LAL+KS++DIVVA+GLLQLAPKKVTPRVTGAFGF +SLI+CYQLLPAP K+K
Sbjct:  167 NEQYQMKLQKCNERRLALIKSSLDIVVAIGLLQLAPKKVTPRVTGAFGFASSLIACYQLLPAPAKSK 233          
BLAST of CK939353 vs. ExPASy Swiss-Prot
Match: PX111_ORYSJ (Peroxisomal membrane protein 11-1 OS=Oryza sativa subsp. japonica GN=PEX11-1 PE=2 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 4.143e-89
Identity = 125/152 (82.24%), Postives = 137/152 (90.13%), Query Frame = 1
Query:   82 MSTLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVFRLFKFVNDLHALISPVPQGTLLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAELLGRISLFCWMGSSVCSTLVELGELGRLSTSM 537
            MSTLDATRAEL LVVLYLNKAEARDKICRAIQYGSKF+S+GQPGTAQ+VD+ST+LARKVFRL K+VNDLH LISP  +GT L LVLLGKSKNALLSTFLFLDQ VWLGR+GIYKNKER + + RISL+CWM SSVC+ LVELGEL RLS SM
Sbjct:    1 MSTLDATRAELGLVVLYLNKAEARDKICRAIQYGSKFISNGQPGTAQDVDRSTTLARKVFRLLKWVNDLHGLISPPAKGTPLTLVLLGKSKNALLSTFLFLDQFVWLGRTGIYKNKERTDRIVRISLYCWMASSVCAGLVELGELKRLSKSM 152          

HSP 2 Score: 104.76 bits (260), Expect = 4.143e-89
Identity = 52/71 (73.24%), Postives = 64/71 (90.14%), Query Frame = 3
Query:  579 NEQYQAKLKKSNERSLALVKSAMDIVVAVGLLQLAPKKVTPRVTGAFGFVTSLISCYQLLPA---PVKAKA 782
            N+QY++K+K+S+ER LALVK+AMD+VVAVGLLQL+PKK+TPRVTGAFGFVTSLISCYQ LP+    +K KA
Sbjct:  167 NDQYKSKMKQSDERLLALVKAAMDVVVAVGLLQLSPKKITPRVTGAFGFVTSLISCYQQLPSRAPAIKVKA 237          
The following BLAST results are available for this feature:
BLAST of CK939353 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
PX11D_ARATH9.011e-10190.73Peroxisomal membrane protein 11D OS=Arabidopsis th... [more]
PX11C_ARATH2.191e-9989.47Peroxisomal membrane protein 11C OS=Arabidopsis th... [more]
PX11E_ARATH4.472e-9788.16Peroxisomal membrane protein 11E OS=Arabidopsis th... [more]
PX115_ORYSJ3.788e-9076.32Peroxisomal membrane protein 11-5 OS=Oryza sativa ... [more]
PX111_ORYSJ4.143e-8982.24Peroxisomal membrane protein 11-1 OS=Oryza sativa ... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004751_F02 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IIIF_F02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939353 ID=CK939353; Name=CK939353; organism=Citrus sinensis; type=EST; length=879bp
GCGGGAAGGGAAATAAGANAAAAAAAGGCAAAATTNNNGCTTTTCGAGGC
CAAATCGTTGCGCACTTTTTTCGGATAAAAAATGAGTACACTGGATGCAA
CCAGAGCAGAACTTGCACTTGTGGTTTTGTATTTGAATAAGGCTGAAGCC
AGGGACAAGATATGCAGAGCTATACAATATGGTTCAAAATTCTTGAGTGA
TGGACAGCCTGGTACTGCCCAAAATGTTGACAAGTCAACCAGCTTAGCCC
GGAAAGTTTTCCGTCTTTTTAAGTTTGTCAATGATTTGCACGCTCTTATC
AGCCCAGTTCCCCAAGGAACTCTGCTACCACTTGTTTTGCTGGGAAAGTC
CAAGAATGCATTATTGTCAACTTTCTTATTTCTTGATCAAGTCGTTTGGC
TTGGCAGATCAGGCATCTACAAGAACAAAGAGCGTGCAGAATTGCTTGGT
CGGATATCTCTTTTTTGTTGGATGGGTTCCTCAGTTTGTAGCACATTAGT
TGAGCTTGGAGAGCTTGGGAGGCTTTCTACATCAATGAAAAAGTTAGAGA
AGGAGCTTAAGGACAGTGATAAGCATAAAATGAACAATACCAAGCTAAAC
TTAAAAAATCAAATGAGAGGTCTCTAGCACTTGTCAAATCAGCCATGGAC
ATTGTGGTGGCGGTTGGGCTGCTTCAATTGGCCCCCAAGAAAGTTACTCC
TCGTGTAACAGGAGCATTTGGATTTGTTACCTCTCTCATCTCTTGTTATC
AGCTACTTCCAGCTCCAGTAAAAGCCAAGGCACCATGAATGGAAAAGGCG
GCTTTGCTGCACAAGCTTCAGTGACATTAAAATAATTATTCGTAGTGGTT
ACATAAGTCAGATGTTGATGTATGCTTTT
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