CK939345

Overview
NameCK939345
Unique NameCK939345
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length501
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2702 contig Csv1_Contig2702:22..522. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK939345 vs. ExPASy Swiss-Prot
Match: RSP40_ARATH (Arginine/serine-rich-splicing factor RSP40 OS=Arabidopsis thaliana GN=RSP40 PE=1 SV=2)

HSP 1 Score: 226.483 bits (576), Expect = 5.461e-59
Identity = 110/145 (75.86%), Postives = 126/145 (86.90%), Query Frame = 1
Query:   67 MRPIFWGNFEYDARQSDLERLFRKCGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFSRKGRKLRVEWTKHERGIIRPGGGSSARRPSTNTRPSKTLFGINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDA 501
            M+P+F GNFEYDAR+ DLERLFRK GKV+RVDMK+GFAF+YM+DERDAEDAIR LDR EF RKGR+LRVEWTK ERG  +  GG S RR S++ RPSKTLF INFD  +TRTRDLE+HFEPYGKI++VRIRRNFAF+QYE QEDA
Sbjct:    1 MKPVFCGNFEYDAREGDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEFGRKGRRLRVEWTKSERGGDKRSGGGS-RRSSSSMRPSKTLFVINFDADNTRTRDLEKHFEPYGKIVNVRIRRNFAFIQYEAQEDA 144          
BLAST of CK939345 vs. ExPASy Swiss-Prot
Match: RSP41_ARATH (Arginine/serine-rich-splicing factor RSP41 OS=Arabidopsis thaliana GN=RSP41 PE=1 SV=2)

HSP 1 Score: 224.557 bits (571), Expect = 2.075e-58
Identity = 109/145 (75.17%), Postives = 125/145 (86.21%), Query Frame = 1
Query:   67 MRPIFWGNFEYDARQSDLERLFRKCGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFSRKGRKLRVEWTKHERGIIRPGGGSSARRPSTNTRPSKTLFGINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDA 501
            M+P+F GNFEYDAR+SDLERLFRK GKV+RVDMK+GFAF+YM+DERDAEDAIR LDR E+ R GR+LRVEWTK++RG     GGS  RR S+  RPSKTLF INFD  +TRTRDLERHFEPYGKI++VRIRRNFAF+QYE QEDA
Sbjct:    1 MKPVFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEYGRTGRRLRVEWTKNDRGGAGRSGGS--RRSSSGLRPSKTLFVINFDAQNTRTRDLERHFEPYGKIVNVRIRRNFAFIQYEAQEDA 143          
BLAST of CK939345 vs. ExPASy Swiss-Prot
Match: RSP31_ARATH (Arginine/serine-rich-splicing factor RSP31 OS=Arabidopsis thaliana GN=RSP31 PE=1 SV=2)

HSP 1 Score: 191.815 bits (486), Expect = 1.491e-48
Identity = 96/145 (66.21%), Postives = 114/145 (78.62%), Query Frame = 1
Query:   67 MRPIFWGNFEYDARQSDLERLFRKCGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFSRKGRKLRVEWTKHERGIIRPGGGSSARRPSTNTRPSKTLFGINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDA 501
            MRP+F GNFEY+ RQSDLERLF K G+VDRVDMKSG+AF+Y +DERDAEDAIR LD   F  + R+L VEW K ERG  RP G   A+ PS N +P+KTLF INFDP  T+  D+E+HFEPYGK+ +VRIRRNF+FVQ+E QEDA
Sbjct:    1 MRPVFVGNFEYETRQSDLERLFDKYGRVDRVDMKSGYAFVYFEDERDAEDAIRKLDNFPFGYEKRRLSVEWAKGERG--RPRG--DAKAPS-NLKPTKTLFVINFDPIRTKEHDIEKHFEPYGKVTNVRIRRNFSFVQFETQEDA 140          
BLAST of CK939345 vs. ExPASy Swiss-Prot
Match: RSP5_CAEEL (Probable splicing factor, arginine/serine-rich 5 OS=Caenorhabditis elegans GN=rsp-5 PE=2 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 3.246e-11
Identity = 42/118 (35.59%), Postives = 60/118 (50.85%), Query Frame = 1
Query:   67 MRPIFWGNFEYDARQSDLERLFRKCGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFSRKGRKLRVEWTKHE-RGIIRPGGGSSARRPSTNTRPSKTLFGINFDPYHTRTRDLER 417
            M  ++ G   Y+AR+ D+ER  +  GK++ + MK GFAF+  +D RDAEDA   LD         +L VE  + + RG  R G  S  RR  +  R S+T       P   R+R  +R
Sbjct:    1 MPRLYLGKIPYNARERDVERFLKGYGKINNISMKYGFAFVDFEDSRDAEDACHDLDGKTMEGSSMRLVVEMARGKPRGNDRHGSRSPRRRSRSPRRRSRT-------PPRRRSRSRDR 111          
BLAST of CK939345 vs. ExPASy Swiss-Prot
Match: RSP3_CAEEL (Probable splicing factor, arginine/serine-rich 3 OS=Caenorhabditis elegans GN=rsp-3 PE=1 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 5.537e-11
Identity = 51/163 (31.29%), Postives = 75/163 (46.01%), Query Frame = 1
Query:   76 IFWGNFEYDARQSDLERLFRKCGKVDRVDMKSG----FAFIYMDDERDAEDAIRGLDRTEFSRKGRKLRVEWTK-----------------HERGIIRPG-GGSSARRPSTNTRPSKTLFGINFDPYHTRTRDLERHFEPYGKIISVRIRRN----FAFVQYE 486
            ++ GN   D R+ ++E +F K G++  VD+KSG    FAF+  +D RDAEDA+R  D  EF   GR++RVE+T+                 H  G  R G GG     P   T     + G+   P     +DL+ H    G +    + R+      F +YE
Sbjct:   11 VYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDGYEFD--GRRIRVEFTRGVGPRGPGGRPLQDGGDHRGGDFRGGRGGGRGGGPQRRTGYRVIVEGL---PPTGSWQDLKDHMRDAGDVCYADVARDGTGVVEFTRYE 168          
The following BLAST results are available for this feature:
BLAST of CK939345 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RSP40_ARATH5.461e-5975.86Arginine/serine-rich-splicing factor RSP40 OS=Arab... [more]
RSP41_ARATH2.075e-5875.17Arginine/serine-rich-splicing factor RSP41 OS=Arab... [more]
RSP31_ARATH1.491e-4866.21Arginine/serine-rich-splicing factor RSP31 OS=Arab... [more]
RSP5_CAEEL3.246e-1135.59Probable splicing factor, arginine/serine-rich 5 O... [more]
RSP3_CAEEL5.537e-1131.29Probable splicing factor, arginine/serine-rich 3 O... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004751_F12 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IIIF_F12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939345 ID=CK939345; Name=CK939345; organism=Citrus sinensis; type=EST; length=501bp
AGACTTTACGTTCTAGGCTTTCAAAGATTACGTTCACAGCTATCAATCGC
CGCTTTCGAAGCTATGATGAGGCCTATCTTCTGGGGGAACTTTGAGTATG
ATGCTCGTCAGTCTGATCTGGAGCGGCTTTTCAGAAAATGTGGAAAAGTT
GATAGAGTGGATATGAAGTCTGGATTTGCATTTATCTATATGGATGATGA
GAGAGATGCTGAGGATGCAATTCGAGGGCTCGATCGAACTGAATTCAGTC
GTAAGGGACGCAAACTTCGTGTTGAATGGACAAAGCATGAACGAGGAATC
ATAAGGCCTGGGGGGGGTTCAAGCGCAAGAAGACCTTCAACAAATACAAG
ACCTTCAAAGACCTTGTTTGGCATTAATTTTGATCCATATCATACGCGCA
CCAGGGACTTAGAAAGGCACTTTGAGCCATATGGAAAAATAATAAGTGTT
AGGATCAGAAGGAATTTTGCATTTGTTCAATATGAAGTGCAGGAGGATGC
C
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