CK939345
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK939345 vs. ExPASy Swiss-Prot
Match: RSP40_ARATH (Arginine/serine-rich-splicing factor RSP40 OS=Arabidopsis thaliana GN=RSP40 PE=1 SV=2) HSP 1 Score: 226.483 bits (576), Expect = 5.461e-59 Identity = 110/145 (75.86%), Postives = 126/145 (86.90%), Query Frame = 1 Query: 67 MRPIFWGNFEYDARQSDLERLFRKCGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFSRKGRKLRVEWTKHERGIIRPGGGSSARRPSTNTRPSKTLFGINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDA 501 M+P+F GNFEYDAR+ DLERLFRK GKV+RVDMK+GFAF+YM+DERDAEDAIR LDR EF RKGR+LRVEWTK ERG + GG S RR S++ RPSKTLF INFD +TRTRDLE+HFEPYGKI++VRIRRNFAF+QYE QEDA Sbjct: 1 MKPVFCGNFEYDAREGDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEFGRKGRRLRVEWTKSERGGDKRSGGGS-RRSSSSMRPSKTLFVINFDADNTRTRDLEKHFEPYGKIVNVRIRRNFAFIQYEAQEDA 144
BLAST of CK939345 vs. ExPASy Swiss-Prot
Match: RSP41_ARATH (Arginine/serine-rich-splicing factor RSP41 OS=Arabidopsis thaliana GN=RSP41 PE=1 SV=2) HSP 1 Score: 224.557 bits (571), Expect = 2.075e-58 Identity = 109/145 (75.17%), Postives = 125/145 (86.21%), Query Frame = 1 Query: 67 MRPIFWGNFEYDARQSDLERLFRKCGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFSRKGRKLRVEWTKHERGIIRPGGGSSARRPSTNTRPSKTLFGINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDA 501 M+P+F GNFEYDAR+SDLERLFRK GKV+RVDMK+GFAF+YM+DERDAEDAIR LDR E+ R GR+LRVEWTK++RG GGS RR S+ RPSKTLF INFD +TRTRDLERHFEPYGKI++VRIRRNFAF+QYE QEDA Sbjct: 1 MKPVFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEYGRTGRRLRVEWTKNDRGGAGRSGGS--RRSSSGLRPSKTLFVINFDAQNTRTRDLERHFEPYGKIVNVRIRRNFAFIQYEAQEDA 143
BLAST of CK939345 vs. ExPASy Swiss-Prot
Match: RSP31_ARATH (Arginine/serine-rich-splicing factor RSP31 OS=Arabidopsis thaliana GN=RSP31 PE=1 SV=2) HSP 1 Score: 191.815 bits (486), Expect = 1.491e-48 Identity = 96/145 (66.21%), Postives = 114/145 (78.62%), Query Frame = 1 Query: 67 MRPIFWGNFEYDARQSDLERLFRKCGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFSRKGRKLRVEWTKHERGIIRPGGGSSARRPSTNTRPSKTLFGINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDA 501 MRP+F GNFEY+ RQSDLERLF K G+VDRVDMKSG+AF+Y +DERDAEDAIR LD F + R+L VEW K ERG RP G A+ PS N +P+KTLF INFDP T+ D+E+HFEPYGK+ +VRIRRNF+FVQ+E QEDA Sbjct: 1 MRPVFVGNFEYETRQSDLERLFDKYGRVDRVDMKSGYAFVYFEDERDAEDAIRKLDNFPFGYEKRRLSVEWAKGERG--RPRG--DAKAPS-NLKPTKTLFVINFDPIRTKEHDIEKHFEPYGKVTNVRIRRNFSFVQFETQEDA 140
BLAST of CK939345 vs. ExPASy Swiss-Prot
Match: RSP5_CAEEL (Probable splicing factor, arginine/serine-rich 5 OS=Caenorhabditis elegans GN=rsp-5 PE=2 SV=3) HSP 1 Score: 67.781 bits (164), Expect = 3.246e-11 Identity = 42/118 (35.59%), Postives = 60/118 (50.85%), Query Frame = 1 Query: 67 MRPIFWGNFEYDARQSDLERLFRKCGKVDRVDMKSGFAFIYMDDERDAEDAIRGLDRTEFSRKGRKLRVEWTKHE-RGIIRPGGGSSARRPSTNTRPSKTLFGINFDPYHTRTRDLER 417 M ++ G Y+AR+ D+ER + GK++ + MK GFAF+ +D RDAEDA LD +L VE + + RG R G S RR + R S+T P R+R +R Sbjct: 1 MPRLYLGKIPYNARERDVERFLKGYGKINNISMKYGFAFVDFEDSRDAEDACHDLDGKTMEGSSMRLVVEMARGKPRGNDRHGSRSPRRRSRSPRRRSRT-------PPRRRSRSRDR 111
BLAST of CK939345 vs. ExPASy Swiss-Prot
Match: RSP3_CAEEL (Probable splicing factor, arginine/serine-rich 3 OS=Caenorhabditis elegans GN=rsp-3 PE=1 SV=2) HSP 1 Score: 67.0106 bits (162), Expect = 5.537e-11 Identity = 51/163 (31.29%), Postives = 75/163 (46.01%), Query Frame = 1 Query: 76 IFWGNFEYDARQSDLERLFRKCGKVDRVDMKSG----FAFIYMDDERDAEDAIRGLDRTEFSRKGRKLRVEWTK-----------------HERGIIRPG-GGSSARRPSTNTRPSKTLFGINFDPYHTRTRDLERHFEPYGKIISVRIRRN----FAFVQYE 486 ++ GN D R+ ++E +F K G++ VD+KSG FAF+ +D RDAEDA+R D EF GR++RVE+T+ H G R G GG P T + G+ P +DL+ H G + + R+ F +YE Sbjct: 11 VYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDGYEFD--GRRIRVEFTRGVGPRGPGGRPLQDGGDHRGGDFRGGRGGGRGGGPQRRTGYRVIVEGL---PPTGSWQDLKDHMRDAGDVCYADVARDGTGVVEFTRYE 168 The following BLAST results are available for this feature:
BLAST of CK939345 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 5
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CK939345 ID=CK939345; Name=CK939345; organism=Citrus sinensis; type=EST; length=501bpback to top |