CK939337

Overview
NameCK939337
Unique NameCK939337
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length700
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11315 contig Csv1_Contig11315:1..696. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK939337 vs. ExPASy Swiss-Prot
Match: Y3028_ARATH (Uncharacterized acetyltransferase At3g50280 OS=Arabidopsis thaliana GN=At3g50280 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.532e-25
Identity = 76/194 (39.18%), Postives = 105/194 (54.12%), Query Frame = 2
Query:   68 SSTTIISKCTVRP---DQKSRIKPLRLSVSDLPMLSCQYIQKGVLLTAPPFSITHFVSLLRQSLSVALSHFPALAGRFST-----DSDGHISILCNDTGVDFIHAKATFLSVNSLLSPI-DVPDSFKEFFAFDRTISYTGHVRPLAAVQVTELADGVFVGCTVNHAVTDGTSFWHFFNTFAEITNGAXKISKVP 622
            +  T IS   VRP   +Q+ R K + L+  DL +L   Y Q+G+L   P    THF+S LR SLS AL  +   AGR +      D      I C+ +G  FIHA +  +SV+ LL P   VPD F+ F+  +   S  G   PL A+QVTE+ DGVF+G   NH V DG S W+FF T+++I +   + +  P
Sbjct:    2 ADVTFISSSIVRPQIINQEGREK-IHLTPFDLNLLYVDYTQRGLLFPKPDPE-THFISRLRTSLSSALDIYFPFAGRLNKVENHEDETVSFYINCDGSGAKFIHAVSDSVSVSDLLRPDGSVPDFFRIFYPMNGVKSIDGLSEPLLALQVTEMRDGVFIGFGYNHMVADGASIWNFFRTWSKICSNGQRENLQP 193          
BLAST of CK939337 vs. ExPASy Swiss-Prot
Match: DCR_ARATH (BAHD acyltransferase DCR OS=Arabidopsis thaliana GN=DCR PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.003e-21
Identity = 76/213 (35.68%), Postives = 105/213 (49.30%), Query Frame = 2
Query:   80 IISKCTVRPDQKSR-IKPLRLSVSDLPMLSCQYIQKGVL--------LTAPPFSITHFVSLLRQSLSVALSHFPALAGRFSTDSDG--HISILCNDT---GVDFIHAKATFLSVNSLLSPIDVPDSFKEFFAFDRTISYTGHVRPLAAVQVTELADGVFVGCTVNHAVTDGTSFWHFFNTFAEITNGAXKISKVPDFSRDTVFDSPAVLKFPA 676
            I+SK  V+P +     K   L+  DLP L+  Y QK +L        L  P F     V  L+  L + L  F  LAG+ + D +G   +     D+   GV+F  A A  ++V+ L +  D    FKE   ++  ++  G  RPL AVQVT+L DG+ +G   NHAV DGTS WHF +++AEI  GA  IS  P   R    D+   L   A
Sbjct:    5 IMSKTHVKPTKPVLGKKQFHLTTFDLPYLAFYYNQKFLLYKFQNLLDLEEPTFQ-NEVVENLKDGLGLVLEDFYQLAGKLAKDDEGVFRVEYDAEDSEINGVEFSVAHAADVTVDDLTAE-DGTAKFKELVPYNGILNLEGLSRPLLAVQVTKLKDGLAMGLAFNHAVLDGTSTWHFMSSWAEICRGAQSISTQPFLDRSKARDTRVKLDLTA 215          
The following BLAST results are available for this feature:
BLAST of CK939337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
Y3028_ARATH3.532e-2539.18Uncharacterized acetyltransferase At3g50280 OS=Ara... [more]
DCR_ARATH9.003e-2135.68BAHD acyltransferase DCR OS=Arabidopsis thaliana G... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004751_H03 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IIIF_H03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939337 ID=CK939337; Name=CK939337; organism=Citrus sinensis; type=EST; length=700bp
GGGAAACTCATCACCATCATTCATAGATATTGNNTTGAAGGAATAAAAGC
AAGCAAACATGCCTTCTTCTTCAACCACAATCATCTCCAAATGCACAGTG
CGCCCCGATCAAAAATCAAGAATCAAGCCTCTGAGACTCTCTGTTTCAGA
CCTCCCCATGCTCTCTTGCCAGTACATTCAAAAGGGCGTCCTCCTCACGG
CCCCTCCATTTTCAATCACCCATTTCGTTTCATTGCTCAGGCAATCACTT
TCGGTCGCTCTTTCCCACTTCCCCGCCCTCGCCGGCCGCTTCTCCACCGA
CTCCGACGGCCACATCAGCATCCTCTGCAACGATACGGGCGTCGACTTCA
TTCACGCCAAGGCCACTTTCCTTTCCGTCAACAGCCTCCTCTCGCCCATC
GACGTCCCCGATTCTTTCAAGGAGTTCTTCGCTTTTGACAGAACCATCAG
CTACACCGGCCATGTCAGGCCCTTAGCCGCCGTCCAAGTGACGGAGCTAG
CTGACGGCGTCTTCGTCGGTTGTACGGTCAATCACGCCGTCACTGACGGT
ACCTCCTTTTGGCACTTCTTTAATACATTCGCCGAAATCACTAACGGCGC
NNNGAAAATCTCGAAAGTTCCCGACTTCTCCCGCGACACCGTTTTTGACT
CGCCGGCGGTGCTCAAGTTCCCCGCCGGTGGCCCCGCTGTTACTTTCTCC
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