CK939334

Overview
NameCK939334
Unique NameCK939334
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length816
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK939334_ssr36 microsatellite CK939334_ssr36:36..53. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13103 contig Csv1_Contig13103:62..877. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CK939334 vs. ExPASy Swiss-Prot
Match: Y3721_ARATH (Uncharacterized protein At3g27210 OS=Arabidopsis thaliana GN=Y-2 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.791e-21
Identity = 74/214 (34.58%), Postives = 104/214 (48.60%), Query Frame = 3 
Query:  195 DSAAAMKMDLSSPFGSNSEKLAIPPS----PVKQAATVNAFR-GLGSKEETFFDSQPWLDSDCEDDFYSVNGDFTPSRGNTPVHHNFAGAPQVNSTSLPDKTPG-SISEPSPTGKKPKLAELFRQISKEGSEDQHVDEQNTQGSQNMANGKTEIRTTILDVLPSANGTPYVSGVNSVCSSERTPNGDSMMEDKPMRS---AQCCLPSFVSCRSS 809
            D+ + +   +   F S  +  +IP +    PVK   + ++ +   GSK+ETFFDSQPWL SD +DDF+SVNGDFTPS GNTP        P+ ++    +K P    S P+P  ++ KL ELFR   +E        E+   GS                   SA  TPY+SG NS     R  N  ++ +++  +S      CLP F SC  S
Sbjct:   34 DNVSILSPSVKKSFESPRKSTSIPANNNLTPVKSRWSFSSSKKSFGSKDETFFDSQPWLQSDSDDDFHSVNGDFTPSLGNTPKSSFSDRPPRFHNLIFHEKKPSRGSSSPAPLPRRKKLGELFRDSIRE--------EREESGSS------------------SAISTPYLSGANS-----REFNDTAIEKEEKKKSNWHHHRCLPGFSSCGGS 216
The following BLAST results are available for this feature:
BLAST of CK939334 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y3721_ARATH1.791e-2134.58Uncharacterized protein At3g27210 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004751_G12 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IIIF_G12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939334 ID=CK939334; Name=CK939334; organism=Citrus sinensis; type=EST; length=816bp
GGGGACTGGGTCTTGTTTTGTATAATTCACTTTCGCTCTCTCTCTCTCTC
TCTTCTGGTGTCTCTACAGAAGAAGATTTTCTGATGCTAAGAGCGTCGCT
GGCTTCTTAGTTTTATTATACCTTTTGTCAATTTAAATAAAGAGAATTTA
GAGACATGGGTTCGTGCGTATCATCAGCACACAAGAGAACAGCAGACTCA
GCCGCTGCCATGAAAATGGACTTATCATCACCATTTGGGTCCAATAGTGA
GAAGCTTGCGATTCCACCTTCCCCCGTGAAACAAGCGGCGACTGTCAACG
CGTTTAGAGGCCTTGGTAGTAAAGAGGAAACCTTTTTCGATTCTCAACCA
TGGCTAGATTCTGACTGCGAAGATGATTTTTACAGTGTCAATGGAGATTT
TACCCCATCTCGTGGCAATACTCCAGTCCATCACAACTTTGCAGGGGCTC
CTCAAGTCAACAGCACTTCTCTTCCGGACAAAACTCCCGGTTCCATTTCT
GAACCATCCCCAACAGGAAAGAAACCGAAACTAGCTGAACTGTTCCGGCA
AATTTCTAAAGAAGGTTCAGAAGACCAACATGTTGATGAACAAAACACCC
AAGGTAGCCAAAACATGGCCAATGGGAAGACAGAAATTAGGACAACTATA
CTTGATGTACTTCCATCAGCAAATGGTACCCCATATGTTTCTGGAGTTAA
CTCTGTGTGTAGTAGTGAAAGGACTCCTAATGGAGATTCTATGATGGAGG
ACAAGCCAATGAGATCGGCACAATGTTGCCTTCCAAGCTTTGTATCATGT
CGTAGTTCTACTGACA
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