CK939331

Overview
NameCK939331
Unique NameCK939331
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length535
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12161 contig Csv1_Contig12161:148..680. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK939331 vs. ExPASy Swiss-Prot
Match: RED_RAT (Protein Red OS=Rattus norvegicus GN=Ik PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.606e-28
Identity = 68/155 (43.87%), Postives = 104/155 (67.10%), Query Frame = 2 
Query:    8 NPDYEPTEL----GSFHAVAPPGNVDLRLADAQKLSIEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIDKKPDAGDDTDGK-SRTSKEDQ----QLSFRTAMAKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSN-DIPTTLHRSKADCP 442
            N DYE TEL     ++ AV P    D   A+ ++  I++SK+LGGD+EHTHLVKGLD+ALL KVR+EI  K    ++   K  + +K+D+    ++ F+T + ++VY+ + K ++  + NE+FLPGRM+++ + +  Y++ DIPTTL RSKADCP
Sbjct:  111 NKDYEETELISTTANYRAVGPTAEADKSAAEKRRQLIQESKFLGGDMEHTHLVKGLDFALLQKVRAEIASKEKEEEELMEKPQKETKKDEDPENKIEFKTRLGRNVYRMLFKSKS-YERNELFLPGRMAYVVDLDDEYADTDIPTTLIRSKADCP 264
[Close]
BLAST of CK939331 vs. ExPASy Swiss-Prot
Match: RED_MOUSE (Protein Red OS=Mus musculus GN=Ik PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.606e-28
Identity = 68/155 (43.87%), Postives = 104/155 (67.10%), Query Frame = 2 
Query:    8 NPDYEPTEL----GSFHAVAPPGNVDLRLADAQKLSIEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIDKKPDAGDDTDGK-SRTSKEDQ----QLSFRTAMAKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSN-DIPTTLHRSKADCP 442
            N DYE TEL     ++ AV P    D   A+ ++  I++SK+LGGD+EHTHLVKGLD+ALL KVR+EI  K    ++   K  + +K+D+    ++ F+T + ++VY+ + K ++  + NE+FLPGRM+++ + +  Y++ DIPTTL RSKADCP
Sbjct:  111 NKDYEETELISTTANYRAVGPTAEADKSAAEKRRQLIQESKFLGGDMEHTHLVKGLDFALLQKVRAEIASKEKEEEELMEKPQKETKKDEDPENKIEFKTRLGRNVYRMLFKSKS-YERNELFLPGRMAYVVDLDDEYADTDIPTTLIRSKADCP 264
[Close]
BLAST of CK939331 vs. ExPASy Swiss-Prot
Match: RED_PONAB (Protein Red OS=Pongo abelii GN=IK PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.404e-28
Identity = 68/155 (43.87%), Postives = 103/155 (66.45%), Query Frame = 2 
Query:    8 NPDYEPTEL----GSFHAVAPPGNVDLRLADAQKLSIEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIDKKPDAGDDTDGK-SRTSKEDQ----QLSFRTAMAKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSN-DIPTTLHRSKADCP 442
            N DYE TEL     ++ AV P    D   A+ ++  I++SK+LGGD+EHTHLVKGLD+ALL KVR+EI  K    ++   K  + +K+D+    ++ F+T + ++VY+ + K +   + NE+FLPGRM+++ + +  Y++ DIPTTL RSKADCP
Sbjct:  111 NKDYEETELISTTANYRAVGPTAEADKSAAEKRRQLIQESKFLGGDMEHTHLVKGLDFALLQKVRAEIASKEKEEEELMEKPQKETKKDEDPENKIEFKTRLGRNVYRMLFKSK-AYERNELFLPGRMAYVVDLDDEYADTDIPTTLIRSKADCP 264
[Close]
BLAST of CK939331 vs. ExPASy Swiss-Prot
Match: RED_HUMAN (Protein Red OS=Homo sapiens GN=IK PE=1 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 7.583e-28
Identity = 68/155 (43.87%), Postives = 102/155 (65.81%), Query Frame = 2 
Query:    8 NPDYEPTEL----GSFHAVAPPGNVDLRLADAQKLSIEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIDKKPDAGDDTDGK-SRTSKEDQ----QLSFRTAMAKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSN-DIPTTLHRSKADCP 442
            N DYE TEL     ++ AV P    D   A+ ++  I++SK+LGGD+EHTHLVKGLD+ALL KVR EI  K    ++   K  + +K+D+    ++ F+T + ++VY+ + K +   + NE+FLPGRM+++ + +  Y++ DIPTTL RSKADCP
Sbjct:  111 NKDYEETELISTTANYRAVGPTAEADKSAAEKRRQLIQESKFLGGDMEHTHLVKGLDFALLQKVRLEIASKDKEEEELMEKPQKETKKDEDPENKIEFKTRLGRNVYRMLFKSK-AYERNELFLPGRMAYVVDLDDEYADTDIPTTLIRSKADCP 264
The following BLAST results are available for this feature:
BLAST of CK939331 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
RED_RAT2.606e-2843.87Protein Red OS=Rattus norvegicus GN=Ik PE=1 SV=1[more]
RED_MOUSE2.606e-2843.87Protein Red OS=Mus musculus GN=Ik PE=2 SV=1[more]
RED_PONAB3.404e-2843.87Protein Red OS=Pongo abelii GN=IK PE=2 SV=1[more]
RED_HUMAN7.583e-2843.87Protein Red OS=Homo sapiens GN=IK PE=1 SV=2[more]
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Properties
Property NameValue
Genbank descriptionCGF1004752_A11 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IVF_A11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939331 ID=CK939331; Name=CK939331; organism=Citrus sinensis; type=EST; length=535bp
GGATCAGAACCCAGATTATGAACCTACAGAATTGGGCTCATTTCACGCCG
TCGCTCCTCCTGGCAACGTTGATCTCCGGTTGGCTGATGCACAAAAGCTT
TCCATCGAGAAGAGCAAGTACCTTGGAGGCGACGTGGAGCACACTCATTT
GGTCAAGGGGTTGGATTATGCGCTGCTTAACAAAGTGAGAAGTGAGATTG
ACAAGAAACCTGATGCTGGGGATGATACTGATGGAAAGTCTAGAACTTCG
AAGGAAGATCAACAATTGTCATTTCGCACTGCAATGGCTAAGTCGGTGTA
TCAATGGATAGTCAAGCCTCAAACTGTTATGAAGACAAATGAGATGTTCC
TCCCAGGTCGAATGTCATTTATTTTTAACACGGAGGGTGGATACTCTAAT
GACATACCAACCACCTTGCATAGAAGTAAAGCTGATTGTCCTGTTTCCAG
ATGAAATGGTTACTGTCAGCGTTGATGGTTCTGTGCTAGACCGAATTGCA
AAAATTATGACATATCTACGCCTTGGATCATCTGG
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