CK939325

Overview
NameCK939325
Unique NameCK939325
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length676
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2479 contig Csv1_Contig2479:37..711. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK939325 vs. ExPASy Swiss-Prot
Match: NTF2_ARATH (Nuclear transport factor 2 OS=Arabidopsis thaliana GN=NTF2 PE=2 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 3.490e-59
Identity = 108/125 (86.40%), Postives = 116/125 (92.80%), Query Frame = 1
Query:   91 NQMDPDSVAKAFVEHYYTTFDANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQCQHSITTVDCQPSGPAGGMLAFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRLNYA 465
            +QMDPD+V+KAFVEHYY+TFD NR GLA LYQE SMLTFEGQKIQG Q+IVAKLTSLPFQQC+H I+TVDCQPSGPA GML FVSGNLQLAGE+HALKFSQMFHLMPTPQGSFYV NDIFRLNYA
Sbjct:    2 SQMDPDAVSKAFVEHYYSTFDTNRVGLAGLYQEASMLTFEGQKIQGVQSIVAKLTSLPFQQCKHHISTVDCQPSGPASGMLVFVSGNLQLAGEEHALKFSQMFHLMPTPQGSFYVFNDIFRLNYA 126          
BLAST of CK939325 vs. ExPASy Swiss-Prot
Match: NTF2_ORYSJ (Nuclear transport factor 2 OS=Oryza sativa subsp. japonica GN=NTF2 PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 8.636e-42
Identity = 82/122 (67.21%), Postives = 94/122 (77.05%), Query Frame = 1
Query:   97 MDPDSVAKAFVEHYYTTFDANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQCQHSITTVDCQPSGPAGGMLAFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRLNY 462
            MD D+VAKAFVEHYY TFD NR  L +LYQ+GSMLTFEGQ+  G+  I  KL SLPF QC H I TVDCQPSGP GGML FVSG+L+   ++H LKFSQMF L+P   G+FYV ND+FRLNY
Sbjct:    1 MDADAVAKAFVEHYYRTFDTNRPALVSLYQDGSMLTFEGQQFLGAAAIAGKLGSLPFAQCHHDINTVDCQPSGPQGGMLVFVSGSLRTGPDEHPLKFSQMFQLLPA-GGNFYVQNDMFRLNY 121          
BLAST of CK939325 vs. ExPASy Swiss-Prot
Match: NTF2_ASHGO (Nuclear transport factor 2 OS=Ashbya gossypii GN=NTF2 PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.058e-31
Identity = 66/123 (53.66%), Postives = 91/123 (73.98%), Query Frame = 1
Query:   97 MDPDSVAKAFVEHYYTTFDANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQCQHSITTVDCQPSGPAGGMLAFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRLNYA 465
            MD  ++A+ F E YY  FD +R+ L NLY++ SMLTFE  ++QG+++IV KL SLPFQ+ QH ITT+D QP+ P G +L  ++G+L +  EQ+A +FSQ+FHLMP    S+YV NDIFRLNY+
Sbjct:    3 MDFSALAQQFTEFYYNQFDTDRSQLGNLYRDQSMLTFETSQLQGAKDIVEKLVSLPFQKVQHRITTLDAQPASPNGDVLVMITGDLLIDDEQNAQRFSQVFHLMP-EGNSYYVFNDIFRLNYS 124          
BLAST of CK939325 vs. ExPASy Swiss-Prot
Match: NTF2_KLULA (Nuclear transport factor 2 OS=Kluyveromyces lactis GN=NTF2 PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.858e-31
Identity = 66/123 (53.66%), Postives = 90/123 (73.17%), Query Frame = 1
Query:   97 MDPDSVAKAFVEHYYTTFDANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQCQHSITTVDCQPSGPAGGMLAFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRLNYA 465
            +D  S+A+ F E YY  FD++RT L NLY+E SMLTFE  ++QG+++IV KL SLPFQ+  H ITT+D QP+ P G +L  ++G+L +  EQ+  +FSQ+FHLMP    S+YV NDIFRLNY+
Sbjct:    3 VDFSSLAQQFTEFYYNQFDSDRTQLGNLYREQSMLTFETTQLQGAKDIVEKLVSLPFQKVAHRITTLDAQPASPNGDVLVMITGDLLIDEEQNPQRFSQVFHLMP-EGSSYYVYNDIFRLNYS 124          
BLAST of CK939325 vs. ExPASy Swiss-Prot
Match: NTF2_EMENI (Nuclear transport factor 2 OS=Emericella nidulans GN=ntf2 PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 8.957e-31
Identity = 65/121 (53.72%), Postives = 85/121 (70.25%), Query Frame = 1
Query:  100 DPDSVAKAFVEHYYTTFDANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQCQHSITTVDCQPSGPAGGMLAFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRLNY 462
            D  S+A+ FV  YY TFD NR GLA LY++ SMLTFE   IQG   I+ KLTSLPFQ+ QH ++T+D QPSG  GG+L  V+G L +  E++ + ++Q F LMP   GS++VLND+FRL Y
Sbjct:    3 DFQSIAQQFVTFYYQTFDGNRAGLAPLYRDHSMLTFETSAIQGVAGIIEKLTSLPFQKVQHQVSTLDAQPSGEHGGILVLVTGALLVDEEKNPMNYTQTFQLMPDGAGSYFVLNDVFRLIY 123          
BLAST of CK939325 vs. ExPASy Swiss-Prot
Match: NTF2_CANGA (Nuclear transport factor 2 OS=Candida glabrata GN=NTF2 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.404e-30
Identity = 63/123 (51.22%), Postives = 91/123 (73.98%), Query Frame = 1
Query:   97 MDPDSVAKAFVEHYYTTFDANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQCQHSITTVDCQPSGPAGGMLAFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRLNYA 465
            MD +++A+ F E YY  FD++R+ L NLY++ SMLTFE  ++QG+++IV KL SLPFQ+  H ITT+D QP+ P G +L  ++G+L +  EQ+  +FSQ+FHL+P    S+YV NDIFRLNY+
Sbjct:    3 MDFNALAQQFTEFYYNQFDSDRSQLGNLYRDESMLTFETSQLQGAKSIVEKLVSLPFQKVAHRITTLDAQPASPNGDVLVMITGDLLIDDEQNPQRFSQVFHLIP-DGNSYYVFNDIFRLNYS 124          
BLAST of CK939325 vs. ExPASy Swiss-Prot
Match: NTF2_YEAST (Nuclear transport factor 2 OS=Saccharomyces cerevisiae GN=NTF2 PE=1 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 1.293e-29
Identity = 62/123 (50.41%), Postives = 90/123 (73.17%), Query Frame = 1
Query:   97 MDPDSVAKAFVEHYYTTFDANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQCQHSITTVDCQPSGPAGGMLAFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRLNYA 465
            +D +++A+ F + YY  FD +R+ L NLY+  SMLTFE  ++QG+++IV KL SLPFQ+ QH ITT+D QP+ P G +L  ++G+L +  EQ+  +FSQ+FHL+P    S+YV NDIFRLNY+
Sbjct:    3 LDFNTLAQNFTQFYYNQFDTDRSQLGNLYRNESMLTFETSQLQGAKDIVEKLVSLPFQKVQHRITTLDAQPASPNGDVLVMITGDLLIDEEQNPQRFSQVFHLIP-DGNSYYVFNDIFRLNYS 124          
BLAST of CK939325 vs. ExPASy Swiss-Prot
Match: NTF2_SCHPO (Nuclear transport factor 2 OS=Schizosaccharomyces pombe GN=ntf2 PE=2 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 1.689e-29
Identity = 62/121 (51.24%), Postives = 91/121 (75.21%), Query Frame = 1
Query:  100 DPDSVAKAFVEHYYTTFDANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQCQHSITTVDCQPSGPAGGMLAFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRLNY 462
            D +++A  F + YY TFD++R+ L++LY+E SML+FEG ++QG++ IV KL SLPFQ+ QH I+T+D QP+G  G ++  V+G L L  EQ A ++SQ+FHL+    G++YVLND+FRLNY
Sbjct:    3 DYNALATQFTQFYYQTFDSDRSQLSSLYREESMLSFEGAQLQGTKAIVEKLVSLPFQRVQHRISTLDAQPTGTTGSVIVMVTGELLLDEEQMAQRYSQVFHLV-NNNGNYYVLNDLFRLNY 122          
BLAST of CK939325 vs. ExPASy Swiss-Prot
Match: NTF2_DEBHA (Nuclear transport factor 2 OS=Debaryomyces hansenii GN=NTF2 PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.689e-29
Identity = 64/123 (52.03%), Postives = 88/123 (71.54%), Query Frame = 1
Query:   97 MDPDSVAKAFVEHYYTTFDANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQCQHSITTVDCQPSGPAGGMLAFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRLNYA 465
            +D ++VA  F   YY  FD++RT L NLY+E SMLTFE  ++QG+++IV KL SLPFQ+  H I+T+D QP  P G +L  V+G L +  EQ+A ++SQ+FHL+P    S+YV NDIFRLNY+
Sbjct:    3 VDFNTVASEFCNFYYQQFDSDRTQLGNLYREQSMLTFETSQLQGAKDIVEKLVSLPFQKVAHRISTLDAQPGSPNGDILVMVTGELIIDDEQNAQRYSQVFHLIP-DGNSYYVFNDIFRLNYS 124          
BLAST of CK939325 vs. ExPASy Swiss-Prot
Match: NTF2_CANAL (Nuclear transport factor 2 OS=Candida albicans GN=NTF2 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.430e-28
Identity = 62/123 (50.41%), Postives = 88/123 (71.54%), Query Frame = 1
Query:   97 MDPDSVAKAFVEHYYTTFDANRTGLANLYQEGSMLTFEGQKIQGSQNIVAKLTSLPFQQCQHSITTVDCQPSGPAGGMLAFVSGNLQLAGEQHALKFSQMFHLMPTPQGSFYVLNDIFRLNYA 465
            +D ++VA  F   YY  FD++R+ L NLY+  SMLTFE  ++QG+++IV KL SLPFQ+  H I+T+D QP+   G +L  V+G L +  EQ+A ++SQ+FHL+P   GS+YV NDIFRLNY+
Sbjct:    3 VDFNAVATEFCNFYYNQFDSDRSQLGNLYRNESMLTFETSQLQGARDIVEKLASLPFQKVAHRISTLDAQPASANGDILVMVTGELLIDEEQNAQRYSQVFHLIP-DNGSYYVFNDIFRLNYS 124          
The following BLAST results are available for this feature:
BLAST of CK939325 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
NTF2_ARATH3.490e-5986.40Nuclear transport factor 2 OS=Arabidopsis thaliana... [more]
NTF2_ORYSJ8.636e-4267.21Nuclear transport factor 2 OS=Oryza sativa subsp. ... [more]
NTF2_ASHGO1.058e-3153.66Nuclear transport factor 2 OS=Ashbya gossypii GN=N... [more]
NTF2_KLULA6.858e-3153.66Nuclear transport factor 2 OS=Kluyveromyces lactis... [more]
NTF2_EMENI8.957e-3153.72Nuclear transport factor 2 OS=Emericella nidulans ... [more]
NTF2_CANGA3.404e-3051.22Nuclear transport factor 2 OS=Candida glabrata GN=... [more]
NTF2_YEAST1.293e-2950.41Nuclear transport factor 2 OS=Saccharomyces cerevi... [more]
NTF2_SCHPO1.689e-2951.24Nuclear transport factor 2 OS=Schizosaccharomyces ... [more]
NTF2_DEBHA1.689e-2952.03Nuclear transport factor 2 OS=Debaryomyces hanseni... [more]
NTF2_CANAL1.430e-2850.41Nuclear transport factor 2 OS=Candida albicans GN=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004752_A04 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IVF_A04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939325 ID=CK939325; Name=CK939325; organism=Citrus sinensis; type=EST; length=676bp
GGGGCTCTCTCNNNAGCGTGAGTCTCAAGCGGAAACAGCAAACGCAAAAT
TCGAAAAGAGAGGCAGGGGTAGGAGGGGATTTTGAAATTCAACCAGATGG
ATCCAGACTCAGTGGCTAAAGCCTTCGTCGAGCACTACTACACGACGTTT
GATGCCAATCGTACGGGGCTCGCCAATCTCTATCAGGAAGGTTCAATGTT
GACTTTTGAAGGTCAAAAAATCCAAGGCTCGCAAAACATCGTCGCTAAGC
TCACTAGCCTTCCCTTCCAGCAGTGCCAGCACTCCATCACCACCGTCGAT
TGCCAGCCCTCCGGTCCCGCTGGCGGCATGCTCGCTTTTGTCTCCGGTAA
TCTCCAACTCGCTGGTGAACAGCACGCTCTCAAGTTCAGCCAGATGTTCC
ATTTGATGCCAACACCTCAGGGAAGCTTTTATGTGTTGAATGACATATTC
AGGTTGAACTATGCATGAAGAGAAGATTGATTGAAAAGGGATGCAACTCC
TGAAGGAGTGAAACATGTTTCCTTATCTTTATTGGATTTTAAACATTTAA
ATGAACACTGGGTTTTTCTGTGGTCGGTTATGTTTAAGGTTCCCTTGTGC
CTTTCCTGAACTTTAAATAGAGACATCTTTTCTGTGATTGGTTGAGCAAA
AAAAAAAAAAAAAAAAAAAAAAAAAA
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