CX675655

Overview
NameCX675655
Unique NameCX675655
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length813
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12567 contig Csv1_Contig12567:791..1603. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675655 vs. ExPASy Swiss-Prot
Match: THI4_CITSI (Thiazole biosynthetic enzyme, chloroplastic OS=Citrus sinensis GN=THI1 PE=2 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 3.658e-67
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = -2
Query:  432 DTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELIL 812
            DTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELIL
Sbjct:  219 DTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELIL 345          
BLAST of CX675655 vs. ExPASy Swiss-Prot
Match: THI4_ALNGL (Thiazole biosynthetic enzyme, chloroplastic OS=Alnus glutinosa GN=THI4 PE=2 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.591e-62
Identity = 117/127 (92.13%), Postives = 123/127 (96.85%), Query Frame = -2
Query:  432 DTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELIL 812
            DTQSCMDPNVMEAKVVVSSCGHDGPFGATGVK L+SIGMI+ VPGMKALDMN AEDAIVRLTRE+VPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK+LG PNALDG+YVGG+HPELIL
Sbjct:  215 DTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKSLRSIGMIDTVPGMKALDMNVAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGLPNALDGSYVGGIHPELIL 341          
BLAST of CX675655 vs. ExPASy Swiss-Prot
Match: THI4_ARATH (Thiazole biosynthetic enzyme, chloroplastic OS=Arabidopsis thaliana GN=THI1 PE=1 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 3.667e-59
Identity = 112/126 (88.89%), Postives = 119/126 (94.44%), Query Frame = -2
Query:  432 TQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELIL 809
            TQSCMDPNVMEAK+VVSSCGHDGPFGATGVKRLKSIGMI+ VPGMKALDMN+AEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKA  LALK+LG PNA+DGT VG + PEL+L
Sbjct:  213 TQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRLKSIGMIDHVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAGQLALKALGLPNAIDGTLVGNLSPELVL 338          
BLAST of CX675655 vs. ExPASy Swiss-Prot
Match: THI41_MAIZE (Thiazole biosynthetic enzyme 1-1, chloroplastic OS=Zea mays GN=THI1-1 PE=2 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.304e-56
Identity = 109/127 (85.83%), Postives = 117/127 (92.13%), Query Frame = -2
Query:  432 DTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELIL 812
            DTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRL+ IGMI  VPGMKALDMN+AED IVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK+LG+PNA+DGT    +  EL++
Sbjct:  218 DTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLQDIGMISAVPGMKALDMNTAEDEIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGRPNAVDGTMSPPLREELMI 344          
BLAST of CX675655 vs. ExPASy Swiss-Prot
Match: THI42_MAIZE (Thiazole biosynthetic enzyme 1-2, chloroplastic OS=Zea mays GN=THI1-2 PE=2 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 4.956e-56
Identity = 107/116 (92.24%), Postives = 112/116 (96.55%), Query Frame = -2
Query:  465 DTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGT 812
            DTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRL+ IGMI  VPGMKALDMN+AED IVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK+LG+PNA+DGT
Sbjct:  215 DTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLQDIGMISAVPGMKALDMNAAEDEIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGRPNAVDGT 330          
BLAST of CX675655 vs. ExPASy Swiss-Prot
Match: THI4_FUSSH (Thiazole biosynthetic enzyme, mitochondrial OS=Fusarium solani subsp. phaseoli GN=STI35 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.006e-32
Identity = 69/105 (65.71%), Postives = 85/105 (80.95%), Query Frame = -2
Query:  498 DTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 812
            D QSCMDPN + A +V+S+ GHD P GA  VKRL S+G IE++ GM+ LDMN AEDAIV+ TRE+VPG+IV GME++E+DGA RMGPTFGAM++SG KAA  ALK
Sbjct:  209 DDQSCMDPNTINAPLVISTTGHDAPMGAFCVKRLVSMGRIEKLGGMRGLDMNVAEDAIVKGTREIVPGLIVGGMELSEVDGANRMGPTFGAMVLSGLKAAEEALK 313          
BLAST of CX675655 vs. ExPASy Swiss-Prot
Match: THI4_FUSOX (Thiazole biosynthetic enzyme, mitochondrial OS=Fusarium oxysporum GN=STI35 PE=2 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 3.821e-32
Identity = 68/105 (64.76%), Postives = 84/105 (80.00%), Query Frame = -2
Query:  498 DTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 812
            D QSCMDPN + A +++S+ GHDGP GA  VKRL S+  IE++ GM+ LDMN AEDAIV+ TRE+VPG+IV GME++E+DGA RMGPTFGAM +SG KAA  ALK
Sbjct:  205 DDQSCMDPNTINAPLIISTTGHDGPMGAFCVKRLVSMQRIEKLGGMRGLDMNLAEDAIVKGTREIVPGLIVGGMELSEVDGANRMGPTFGAMALSGLKAAEEALK 309          
BLAST of CX675655 vs. ExPASy Swiss-Prot
Match: THI4_ASPOR (Thiazole biosynthetic enzyme, mitochondrial OS=Aspergillus oryzae GN=thiA PE=3 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 1.112e-31
Identity = 66/105 (62.86%), Postives = 83/105 (79.05%), Query Frame = -2
Query:  498 DTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 812
            D  SCMDPN + A V++S+ GHDGPFGA   KRL S+G ++++ GM+ LDMNSAEDAIV+ TREV  G+I+ GME++EIDG  RMGPTFGAM++SG KAA  ALK
Sbjct:  212 DDHSCMDPNTINAPVIISTTGHDGPFGAFCAKRLVSMGSVDKLGGMRGLDMNSAEDAIVKNTREVTKGLIIGGMELSEIDGFNRMGPTFGAMVLSGVKAAEEALK 316          
BLAST of CX675655 vs. ExPASy Swiss-Prot
Match: THI2_SCHPO (Thiazole biosynthetic enzyme, mitochondrial OS=Schizosaccharomyces pombe GN=thi2 PE=2 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 3.577e-30
Identity = 68/116 (58.62%), Postives = 82/116 (70.69%), Query Frame = -2
Query:  459 QSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYV 806
            QSCMDPN + A +VVS+ GHDGPFGA  VKRL S  ++  +  M+ LDMN AED IV+ TREV PGMIV GME++E DGA RMGPTFG MM SG KAA  AL    +  A++  Y+
Sbjct:  213 QSCMDPNTINAHLVVSATGHDGPFGAFCVKRLASAQLVSNLHDMRPLDMNRAEDLIVKGTREVFPGMIVGGMELSEFDGANRMGPTFGGMMFSGIKAAQEALAIFDERKAVNEKYL 328          
BLAST of CX675655 vs. ExPASy Swiss-Prot
Match: THI4_UROFA (Thiazole biosynthetic enzyme, mitochondrial OS=Uromyces fabae GN=THI2 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.671e-30
Identity = 65/119 (54.62%), Postives = 86/119 (72.27%), Query Frame = -2
Query:  456 DTQSCMDPNVMEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVG 812
            D QSCMDP+ + A +V S  GHDGPFGA  VKR+ S G+ E +  M+ LDM  AED I   TRE++PG+IV GME++E DG+ RMGPTFGAM++SG++AA +AL+SL +    +G  VG
Sbjct:  217 DHQSCMDPSTITAPLVCSFAGHDGPFGAFCVKRVASAGLSEGLGDMRPLDMERAEDHIANKTREILPGLIVGGMELSEFDGSARMGPTFGAMLLSGKRAAEVALQSLDRVKIEEGEVVG 335          
The following BLAST results are available for this feature:
BLAST of CX675655 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
THI4_CITSI3.658e-67100.00Thiazole biosynthetic enzyme, chloroplastic OS=Cit... [more]
THI4_ALNGL1.591e-6292.13Thiazole biosynthetic enzyme, chloroplastic OS=Aln... [more]
THI4_ARATH3.667e-5988.89Thiazole biosynthetic enzyme, chloroplastic OS=Ara... [more]
THI41_MAIZE1.304e-5685.83Thiazole biosynthetic enzyme 1-1, chloroplastic OS... [more]
THI42_MAIZE4.956e-5692.24Thiazole biosynthetic enzyme 1-2, chloroplastic OS... [more]
THI4_FUSSH1.006e-3265.71Thiazole biosynthetic enzyme, mitochondrial OS=Fus... [more]
THI4_FUSOX3.821e-3264.76Thiazole biosynthetic enzyme, mitochondrial OS=Fus... [more]
THI4_ASPOR1.112e-3162.86Thiazole biosynthetic enzyme, mitochondrial OS=Asp... [more]
THI2_SCHPO3.577e-3058.62Thiazole biosynthetic enzyme, mitochondrial OS=Sch... [more]
THI4_UROFA4.671e-3054.62Thiazole biosynthetic enzyme, mitochondrial OS=Uro... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_63G10_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-63G10-M19-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675655 ID=CX675655; Name=CX675655; organism=Citrus sinensis; type=EST; length=813bp
TTTTTTAAAACAGAGTAAGCTCAGATCTTCATCATTGATCTTAATCACAT
CAGCACTTTCCCATTGGCTGATGCCTCAAGTTATAAACATACAAGGCAAA
GAAAAGGGAACAGCCCAAGGGCAGTCTTACACATAACACAGATAACAAGG
ACTAGATACGCAACTGCAAATTCACCTCCGAAAAACTCACAACGGTTTCT
TACAAGAGGAGAAAGAAATTAAAATTAAAGGTTCCATGATGGACCGGAAA
CAAACACTTTATTCACAAAACCTCACAACATTATCTCATTATTCGCATCA
ACCATCCATCACAACCACCTAAATACAACTACTTTTTTGCCAGAGTTTAT
TTGCATGCACACAGCTGATGAGTGATGATGCCTGTTATTACCAAATTAAG
CATCAGCAGTCTCAGCAGAATCAGCTGCAGCTAAGATCAGCTCAGGGTGA
ACGCCTCCCACATATGTACCGTCTAATGCATTCGGCTGGCCCAGTGACTT
CAACGCCAAATGCGCAGCCTTCTGCCCCGATATCATCATTGCTCCAAATG
TTGGCCCCATTCGAGGAGCACCATCAATCTCGGCAACTTCCATGCCGGTA
ACTATCATACCAGGCACAACCTCCCTGGTCAGCCTCACAATAGCATCTTC
TGCAGAGTTCATGTCCAGTGCCTTCATTCCAGGCACTTCCTCAATCATTC
CGATACTCTTCAACCTCTTTACTCCGGTGGCCCCAAAAGGCCCATCATGG
CCACAAGAGCTCACAACCACCTTCGCTTCCATTACATTGGGATCCATGCA
AGACTGTGTATCG
back to top