CK939318

Overview
NameCK939318
Unique NameCK939318
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length763
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1192 contig Csv1_Contig1192:397..1159. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK939318 vs. ExPASy Swiss-Prot
Match: QORH_ARATH (Putative quinone-oxidoreductase homolog, chloroplastic OS=Arabidopsis thaliana GN=At4g13010 PE=2 SV=1)

HSP 1 Score: 301.982 bits (772), Expect = 2.367e-81
Identity = 157/216 (72.69%), Postives = 174/216 (80.56%), Query Frame = 2
Query:  116 MAGKPLMHAVQYNSYGGGAADLKHVELSVPTPSKDEVLPKLEATALNPVDWKVQKGQLRPFLPRKFPCIPATDXXXXXXXXXXXXKIFKAGDKVVAFLNYLVTNGGGLAEFAVAKESSTVTRPPEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGARXXEFVKSLGADXVLDYKTPDGAA 763
            MAGK LMHA+QYNSYGGGAA L+HV++ VPTP  +EV  KLEAT+LNPVDWK+QKG +RPFLPRKFPCIPATD            K FKAGDKVVA L++L   GGGLAEFAVA E  TV RP EV AAE + LPVAGLTA QALT  AG+KLDG+G++ NILVTAASGGVGHYAVQLAKL N HVTA+CGAR  EFVKSLGAD VLDYKTP+GAA
Sbjct:    1 MAGK-LMHALQYNSYGGGAAGLEHVQVPVPTPKSNEVCLKLEATSLNPVDWKIQKGMIRPFLPRKFPCIPATDVAGEVVEVGSGVKNFKAGDKVVAVLSHL--GGGGLAEFAVATEKLTVKRPQEVGAAEAAALPVAGLTALQALTNPAGLKLDGTGKKANILVTAASGGVGHYAVQLAKLANAHVTATCGARNIEFVKSLGADEVLDYKTPEGAA 213          
BLAST of CK939318 vs. ExPASy Swiss-Prot
Match: QORH_SPIOL (Quinone-oxidoreductase homolog, chloroplastic OS=Spinacia oleracea GN=QOR PE=1 SV=1)

HSP 1 Score: 292.738 bits (748), Expect = 1.436e-78
Identity = 148/216 (68.52%), Postives = 169/216 (78.24%), Query Frame = 2
Query:  116 MAGKPLMHAVQYNSYGGGAADLKHVELSVPTPSKDEVLPKLEATALNPVDWKVQKGQLRPFLPRKFPCIPATDXXXXXXXXXXXXKIFKAGDKVVAFLNYLVTNGGGLAEFAVAKESSTVTRPPEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGARXXEFVKSLGADXVLDYKTPDGAA 763
            MA K LMHA+QY+ YGGG   LKHVE++VP P  DE+L K+EA  LNP+DWK+QKG LRP LPRKFP IP TD              FK GDKVVA L++    GG LAE+AVAKE+ TV RPPEVSAAEG+ LPVA LTAHQALTQ A +KLDGSG++KNIL+TAASGGVGHYAVQLAKLGNTHVTA+CGAR  +FVK LGAD VLDYKTP+GA+
Sbjct:    1 MAAK-LMHAIQYSGYGGGTDALKHVEVAVPDPKSDELLLKIEAATLNPIDWKIQKGVLRPLLPRKFPTIPGTDVAGEVVQAGSAVNRFKTGDKVVAVLSH--ATGGALAEYAVAKENLTVARPPEVSAAEGAALPVAALTAHQALTQFANIKLDGSGERKNILITAASGGVGHYAVQLAKLGNTHVTATCGARNLDFVKGLGADEVLDYKTPEGAS 213          
BLAST of CK939318 vs. ExPASy Swiss-Prot
Match: QORL_ARATH (Quinone oxidoreductase-like protein At1g23740, chloroplastic OS=Arabidopsis thaliana GN=At1g23740 PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.156e-19
Identity = 72/212 (33.96%), Postives = 101/212 (47.64%), Query Frame = 2
Query:  134 MHAVQYNSYGGGAADLKHVELSVPTPSKDEVLPKLEATALNPVDWKVQKGQLRPFLPRKFPCIPATDXXXXXXXXXXXXKIFKAGDKVVAFLNYLVTNG----GGLAEFAVAKESSTVTRPPEVSAAEGSGLPVAGLTAHQALTQ---SAGVKLDGSGQQKNILVTAASGGVGHYAVQLAK--LGNTHVTASCGARXXEFVKSLGADXVLDY 742
            M A  Y+ YGG         + VP   +D+VL K+ A ALNPVD K ++G+ +       P +P  D            K  K GD+V A ++     G    G LAE+   +E     +P  +  A+ +GLP+A  TA + L +   SAG         K+ILV   +GGVG   +QLAK   G + V A+      E V+SLGAD  +DY
Sbjct:   78 MKAWVYSDYGGVDVLKLESNIVVPEIKEDQVLIKVVAAALNPVDAKRRQGKFKA-TDSPLPTVPGYDVAGVVVKVGSAVKDLKEGDEVYANVSEKALEGPKQFGSLAEYTAVEEKLLALKPKNIDFAQAAGLPLAIETADEGLVRTEFSAG---------KSILVLNGAGGVGSLVIQLAKHVYGASKVAATASTEKLELVRSLGADLAIDY 279          
BLAST of CK939318 vs. ExPASy Swiss-Prot
Match: RT4I1_HUMAN (Reticulon-4-interacting protein 1, mitochondrial OS=Homo sapiens GN=RTN4IP1 PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.414e-17
Identity = 60/189 (31.75%), Postives = 90/189 (47.62%), Query Frame = 2
Query:  218 DEVLPKLEATALNPVDWKVQKGQLRPFLPRK------------FPCIPATDXXXXXXXXXXXXKIFKAGDKVVAFLNYLVTNGGGLAEFAVAKESSTVTRPPEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGARXXEFVKSLGADXVLDYKT 748
            +EV+ K+ A ++NP+D  ++ G     L  K            FP     D            K FK GD+V A +       G L+EF V   +    +P  ++  + + LP   LTA  A+ +  G+  D +   K +L+  ASGGVG +A+Q+ K  + HVTA C     E V+ LGAD V+DYK+
Sbjct:   72 NEVIVKVHAASVNPIDVNMRSGYGATALNMKRDPLHVKIKGEEFPLTLGRDVSGVVMECGLDVKYFKPGDEVWAAVP--PWKQGTLSEFVVVSGNEVSHKPKSLTHTQAASLPYVALTAWSAINKVGGLN-DKNCTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVCSQDASELVRKLGADDVIDYKS 257          
BLAST of CK939318 vs. ExPASy Swiss-Prot
Match: RT4I1_DANRE (Reticulon-4-interacting protein 1 homolog, mitochondrial OS=Danio rerio GN=rtn4ip1 PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.846e-17
Identity = 58/187 (31.02%), Postives = 84/187 (44.92%), Query Frame = 2
Query:  218 DEVLPKLEATALNPVDWKVQKGQLRPFLPRK------------FPCIPATDXXXXXXXXXXXXKIFKAGDKVVAFLNYLVTNGGGLAEFAVAKESSTVTRPPEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGARXXEFVKSLGADXVLDY 742
            +EV+ K+ A  LNP+D  ++ G     +  K            FP I   D            K FK GD+V A +       G LAEF V   +    +P  +   E + +P    TA  A+  + G+  D S + K +L+   SGGVG +A+Q+ K    HVT +C       V+ LGAD V+DY
Sbjct:   58 NEVVVKVHAAGLNPIDISMRGGYGAATMAMKRDPLNISQSGGEFPLILGRDVSGEIMECGLDVKYFKPGDQVWAAIP--PWKQGSLAEFVVVSGNEVSHKPKSLRHDEAASIPYVAATAWSAIVNTGGLNKDNSAK-KRVLILGGSGGVGTFAIQMVKAWGAHVTVTCSQNAERLVRDLGADDVVDY 241          
BLAST of CK939318 vs. ExPASy Swiss-Prot
Match: RT4I1_BOVIN (Reticulon-4-interacting protein 1, mitochondrial OS=Bos taurus GN=RTN4IP1 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.113e-17
Identity = 59/189 (31.22%), Postives = 90/189 (47.62%), Query Frame = 2
Query:  218 DEVLPKLEATALNPVDWKVQKGQLRPFLPRK------------FPCIPATDXXXXXXXXXXXXKIFKAGDKVVAFLNYLVTNGGGLAEFAVAKESSTVTRPPEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGARXXEFVKSLGADXVLDYKT 748
            +EV+ K+ A ++NP+D  ++ G     L  K            FP     D            + FK GD+V A +       G L+EF V   +    +P  ++  + + LP   LTA  A+ +  G+  D +   K +L+  ASGGVG +A+Q+ K  + HVTA C     E V+ LGAD V+DYK+
Sbjct:   72 NEVIIKVHAASINPIDVNMRSGYGATALNMKRDPLHVKIKGEEFPLTLGRDVSGVVMECGLDVRYFKPGDEVWAAVP--PWKQGTLSEFVVVSGNEVSHKPRSLTHTQAASLPYVALTAWSAINKVGGLN-DRNCTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVCSQDASELVRKLGADDVIDYKS 257          
BLAST of CK939318 vs. ExPASy Swiss-Prot
Match: QOR_BOVIN (Zeta-crystallin OS=Bos taurus GN=CRYZ PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 3.482e-16
Identity = 64/214 (29.91%), Postives = 101/214 (47.20%), Query Frame = 2
Query:  122 GKPLMHAVQYNSYGGGAADLKHVELSVPTPSKDEVLPKLEATALNPVDWKVQKG--QLRPFLPRKFPCIPATDXXXXXXXXXXXXKIFKAGDKVVAFLNYLVTNGGGLAEFAVAKESSTVTRPPEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGARXXE-FVKSLGADXVLDYKTPD 754
            G+ LM A++   +GG        +++VP P   +VL K++A  +NPVD  ++ G   ++P L    P  P  D              FK GD+V        T  GG AE+A+A + +  T P ++   +G+ + +   TA++AL  SA VK       +++LV  ASGGVG  A Q+A+     V  +      +  V   GA  V ++K  D
Sbjct:    4 GQKLMRAIRVFEFGGPEVLKLQSDVAVPIPKDHQVLIKVQACGVNPVDTYIRSGTHNIKPLL----PYTPGFDVAGIIEAVGESVSAFKKGDRVFT----TRTISGGYAEYALAADHTVYTLPEKLDFKQGAAIGIPYFTAYRALLHSACVK-----PGESVLVHGASGGVGIAACQIARAYGLKVLGTASTEEGQKIVLENGAHKVFNHKEAD 204          
BLAST of CK939318 vs. ExPASy Swiss-Prot
Match: RT4I1_MOUSE (Reticulon-4-interacting protein 1, mitochondrial OS=Mus musculus GN=Rtn4ip1 PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 5.939e-16
Identity = 58/187 (31.02%), Postives = 87/187 (46.52%), Query Frame = 2
Query:  218 DEVLPKLEATALNPVDWKVQKGQLRPFLPRK------------FPCIPATDXXXXXXXXXXXXKIFKAGDKVVAFLNYLVTNGGGLAEFAVAKESSTVTRPPEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGARXXEFVKSLGADXVLDY 742
            +EV+ K+ A ++NP+D  ++ G     L  K            FP     D            K F+ GD+V A +       G L+EF V   +    +P  ++  + + LP   LTA  A+ +  G+  D + + K  L+  ASGGVG +A+Q+ K    HVTA C     E V+ LGAD V+DY
Sbjct:   72 NEVIIKVHAASVNPIDVNMRSGYGATALNMKRDPLHMKTKGEEFPLTLGRDVSGVVMECGLDVKYFQPGDEVWAAVP--PWKQGTLSEFVVVSGNEVSHKPKSLTHTQAASLPYVALTAWSAINKVGGLS-DKNCKGKRALILGASGGVGTFAIQVMKAWGAHVTAVCSKDASELVRKLGADEVIDY 255          
BLAST of CK939318 vs. ExPASy Swiss-Prot
Match: QOR_LAMGU (Quinone oxidoreductase OS=Lama guanicoe GN=CRYZ PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.567e-15
Identity = 61/209 (29.19%), Postives = 98/209 (46.89%), Query Frame = 2
Query:  122 GKPLMHAVQYNSYGGGAADLKHVELSVPTPSKDEVLPKLEATALNPVDWKVQKGQLRPFLPRKFPCIPATDXXXXXXXXXXXXKIFKAGDKVVAFLNYLVTNGGGLAEFAVAKESSTVTRPPEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGARXXE-FVKSLGADXVLDYK 745
            G+ LM A++ + +GG        +++VP P + +VL K++A  +NPVD  ++ G        + P  P  D              FK GD+V        T  GG AE+A+A + +    P E+   +G+ + V   TA++AL  SA  K       +++LV  ASGGVG  A Q+A+     V  + G    +  V   GA  V +++
Sbjct:    4 GQRLMRAIRVSEFGGPEVLKLQSDVAVPIPEEHQVLIKVQACGVNPVDTYIRSGTYS--RKPRLPYTPGLDVAGLIEAVGERVSAFKKGDRVFT----TSTVSGGYAEYALAADHTVYKLPGELDFQKGAAIGVPYFTAYRALLHSACAKAG-----ESVLVHGASGGVGLAACQIARACCFKVLGTAGTEEGQRVVLQNGAHEVFNHR 201          
BLAST of CK939318 vs. ExPASy Swiss-Prot
Match: QOR_HUMAN (Quinone oxidoreductase OS=Homo sapiens GN=CRYZ PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.577e-15
Identity = 61/211 (28.91%), Postives = 99/211 (46.92%), Query Frame = 2
Query:  122 GKPLMHAVQYNSYGGGAADLKHVELSVPTPSKDEVLPKLEATALNPVDWKVQKG--QLRPFLPRKFPCIPATDXXXXXXXXXXXXKIFKAGDKVVAFLNYLVTNGGGLAEFAVAKESSTVTRPPEVSAAEGSGLPVAGLTAHQALTQSAGVKLDGSGQQKNILVTAASGGVGHYAVQLAKLGNTHVTASCGARXXE-FVKSLGADXVLDYK 745
            G+ LM AV+   +GG        +++VP P   +VL K+ A  +NPV+  ++ G    +P L    P  P +D              FK GD+V        T  GG AE+A+A + +    P ++   +G+ + +   TA++AL  SA VK       +++LV  ASGGVG  A Q+A+     +  + G    +  V   GA  V +++
Sbjct:    4 GQKLMRAVRVFEFGGPEVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSRKPLL----PYTPGSDVAGVIEAVGDNASAFKKGDRVFT----SSTISGGYAEYALAADHTVYKLPEKLDFKQGAAIGIPYFTAYRALIHSACVKAG-----ESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAHEVFNHR 201          
The following BLAST results are available for this feature:
BLAST of CK939318 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
QORH_ARATH2.367e-8172.69Putative quinone-oxidoreductase homolog, chloropla... [more]
QORH_SPIOL1.436e-7868.52Quinone-oxidoreductase homolog, chloroplastic OS=S... [more]
QORL_ARATH1.156e-1933.96Quinone oxidoreductase-like protein At1g23740, chl... [more]
RT4I1_HUMAN1.414e-1731.75Reticulon-4-interacting protein 1, mitochondrial O... [more]
RT4I1_DANRE1.846e-1731.02Reticulon-4-interacting protein 1 homolog, mitocho... [more]
RT4I1_BOVIN4.113e-1731.22Reticulon-4-interacting protein 1, mitochondrial O... [more]
QOR_BOVIN3.482e-1629.91Zeta-crystallin OS=Bos taurus GN=CRYZ PE=2 SV=2[more]
RT4I1_MOUSE5.939e-1631.02Reticulon-4-interacting protein 1, mitochondrial O... [more]
QOR_LAMGU6.567e-1529.19Quinone oxidoreductase OS=Lama guanicoe GN=CRYZ PE... [more]
QOR_HUMAN8.577e-1528.91Quinone oxidoreductase OS=Homo sapiens GN=CRYZ PE=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004752_C04 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IVF_C04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939318 ID=CK939318; Name=CK939318; organism=Citrus sinensis; type=EST; length=763bp
GGGGACGCTGTCACTGCGTTACATACATATTATAATCGTATGCAGAGTGG
TCTCTTTGATTCTATCGATAGCACACTCGAAATCCCAGAAACGGCATCGT
GTATTAGCTGTGAAAATGGCAGGAAAGCCTCTTATGCACGCGGTTCAGTA
TAATTCTTATGGTGGAGGAGCTGCTGATTTGAAGCATGTTGAACTGTCGG
TTCCTACCCCAAGCAAAGATGAGGTTTTGCCTAAACTTGAAGCAACCGCT
CTAAATCCGGTTGACTGGAAAGTCCAGAAGGGCCAGTTACGCCCTTTTTT
GCCTCGCAAGTTTCCTTGCATACCTGCAACTGATGTAGCAGGAGAGGTCG
TAGGGGTAGGATCAGAAGTTAAAATTTTCAAAGCTGGTGACAAAGTTGTA
GCTTTTCTTAACTACCTCGTAACTAATGGAGGTGGACTAGCTGAGTTTGC
TGTGGCTAAGGAGAGCTCGACAGTTACCAGGCCACCAGAGGTTTCAGCAG
CTGAAGGTTCTGGCTTACCTGTTGCTGGTCTCACTGCTCACCAGGCCCTT
ACTCAATCTGCAGGTGTCAAGCTTGATGGAAGTGGGCAACAGAAAAACAT
TCTAGTAACTGCCGCCTCAGGGGGTGTAGGTCACTATGCTGTTCAGTTGG
CGAAGCTTGGAAACACGCACGTGACTGCCTCTTGTGGGGCTCGCAANNNN
GAATTTGTCAAGAGTTTAGGGGCTGATGNGGTTCTTGATTACAAGACACC
TGACGGGGCAGCT
back to top