CX675654

Overview
NameCX675654
Unique NameCX675654
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length776
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX675654_ssr558 microsatellite CX675654_ssr558:558..569. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX675654 vs. ExPASy Swiss-Prot
Match: RAP23_ARATH (Ethylene-responsive transcription factor RAP2-3 OS=Arabidopsis thaliana GN=RAP2-3 PE=1 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 7.351e-30
Identity = 84/191 (43.98%), Postives = 101/191 (52.88%), Query Frame = -2
Query:  257 EKKTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXAKRIRGDKAKLNF--------------XXXXXXXXXXXAKKRCMPS---PELTQPRFETIGTPPAPAPSPWVGFGYQNEFYQ-PRAVDDEFELSQQISRLESFLGLEPLMSQPSGNVAGGCDSVDFWMLDDVAATQQ 775
            E   +R RKNVYRGIR+RPWGKWAAEIRDP KGVRVWLGTFNT           AK+IRGDKAKLNF                         AKK C+ S    EL+QP F          P   +GFG  +EF       + +++L QQIS LESFL L+   ++    +      VD WMLDDV A+ +
Sbjct:   68 EPGKRRKRKNVYRGIRKRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAAMAYDVAAKQIRGDKAKLNFPDLHHPPPPNYTPPPSSPRSTDQPPAKKVCVVSQSESELSQPSF----------PVECIGFGNGDEFQNLSYGFEPDYDLKQQISSLESFLELDGNTAEQPSQLDESVSEVDMWMLDDVIASYE 248          
BLAST of CX675654 vs. ExPASy Swiss-Prot
Match: ERF1_ORYSJ (Ethylene-responsive transcription factor 1 OS=Oryza sativa subsp. japonica GN=EREBP1 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.897e-18
Identity = 44/66 (66.67%), Postives = 49/66 (74.24%), Query Frame = -2
Query:  575 KKTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXAKRIRGDKAKLNF 772
            K  +R RKN +RGIRQRPWGKWAAEIRDP KGVRVWLGTFN+           A+RIRG KAK+NF
Sbjct:  110 KSAKRKRKNQFRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNSAEEAARAYDAEARRIRGKKAKVNF 175          
BLAST of CX675654 vs. ExPASy Swiss-Prot
Match: RA212_ARATH (Ethylene-responsive transcription factor RAP2-12 OS=Arabidopsis thaliana GN=RAP2-12 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.942e-18
Identity = 43/67 (64.18%), Postives = 47/67 (70.15%), Query Frame = -2
Query:  575 EKKTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXAKRIRGDKAKLNF 775
            EK   R RKN YRGIRQRPWGKWAAEIRDP +G R+WLGTF T           A+RIRG KAK+NF
Sbjct:  114 EKSANRKRKNQYRGIRQRPWGKWAAEIRDPREGARIWLGTFKTAEEAARAYDAAARRIRGSKAKVNF 180          
BLAST of CX675654 vs. ExPASy Swiss-Prot
Match: ERF71_ARATH (Ethylene-responsive transcription factor ERF071 OS=Arabidopsis thaliana GN=ERF071 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.942e-18
Identity = 45/67 (67.16%), Postives = 49/67 (73.13%), Query Frame = -2
Query:  575 EKKTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXAKRIRGDKAKLNF 775
            E+  +R RKN+YRGIRQRPWGKWAAEIRDP KGVRVWLGTF T           A +IRG KAKLNF
Sbjct:   39 ERDGKRERKNLYRGIRQRPWGKWAAEIRDPSKGVRVWLGTFKTADEAARAYDVAAIKIRGRKAKLNF 105          
BLAST of CX675654 vs. ExPASy Swiss-Prot
Match: RAP22_ARATH (Ethylene-responsive transcription factor RAP2-2 OS=Arabidopsis thaliana GN=RAP2-2 PE=2 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 6.455e-18
Identity = 44/67 (65.67%), Postives = 49/67 (73.13%), Query Frame = -2
Query:  575 EKKTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXAKRIRGDKAKLNF 775
            EK ++R RKN YRGIRQRPWGKWAAEIRDP KG R WLGTF+T           A+RIRG KAK+NF
Sbjct:  117 EKSSKRKRKNQYRGIRQRPWGKWAAEIRDPRKGSREWLGTFDTAEEAARAYDAAARRIRGTKAKVNF 183          
BLAST of CX675654 vs. ExPASy Swiss-Prot
Match: ERF73_ARATH (Ethylene-responsive transcription factor ERF073 OS=Arabidopsis thaliana GN=ERF073 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.712e-16
Identity = 44/66 (66.67%), Postives = 47/66 (71.21%), Query Frame = -2
Query:  575 KKTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXAKRIRGDKAKLNF 772
            KK Q  R   Y+GIR+RPWG+WAAEIRDP KGVRVWLGTFNT           AKRIRG KAKLNF
Sbjct:   18 KKKQSSR---YKGIRRRPWGRWAAEIRDPIKGVRVWLGTFNTAEEAARAYDLEAKRIRGAKAKLNF 80          
BLAST of CX675654 vs. ExPASy Swiss-Prot
Match: EF112_ARATH (Ethylene-responsive transcription factor ERF112 OS=Arabidopsis thaliana GN=ERF112 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.626e-16
Identity = 57/135 (42.22%), Postives = 66/135 (48.89%), Query Frame = -2
Query:  377 EKKTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXAKRIRGDKAKLNFXXXXXXXXXXXAKKRCMPSPELTQPRFETIGTPPAPAP--SPWVGFGYQNEFYQPRAVDDEFELSQQI 775
            EK   R R   YRG+RQRPWGKWAAEIRDP K  RVWLGTF+T           A   RG KAKLNF              +  PSP  +  R   I TPP+P P  +P +       F Q R+ D    LS  +
Sbjct:   61 EKSNSRQRN--YRGVRQRPWGKWAAEIRDPNKAARVWLGTFDTAEEAALAYDKAAFEFRGHKAKLNF-----PEHIRVNPTQLYPSPATSHDRI--IVTPPSPPPPIAPDILLDQYGHF-QSRSSDSSANLSMNM 185          
BLAST of CX675654 vs. ExPASy Swiss-Prot
Match: EF110_ARATH (Ethylene-responsive transcription factor ERF110 OS=Arabidopsis thaliana GN=ERF110 PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.998e-15
Identity = 38/62 (61.29%), Postives = 44/62 (70.97%), Query Frame = -2
Query:  575 RVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXAKRIRGDKAKLNF 760
            R +K  YRG+RQRPWGKWAAEIRDP++  RVWLGTF+T           A R RG+KAKLNF
Sbjct:   71 REKKRRYRGVRQRPWGKWAAEIRDPHRAARVWLGTFDTAEAAARAYDEAALRFRGNKAKLNF 132          
BLAST of CX675654 vs. ExPASy Swiss-Prot
Match: RAP26_ARATH (Ethylene-responsive transcription factor RAP2-6 OS=Arabidopsis thaliana GN=RAP2-6 PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 8.724e-15
Identity = 38/60 (63.33%), Postives = 40/60 (66.67%), Query Frame = -2
Query:  575 RKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXAKRIRGDKAKLNF 754
            R   YRG+RQRPWGKWAAEIRDP+K  RVWLGTF T           A R RG KAKLNF
Sbjct:   57 RPKKYRGVRQRPWGKWAAEIRDPHKATRVWLGTFETAEAAARAYDAAALRFRGSKAKLNF 116          
BLAST of CX675654 vs. ExPASy Swiss-Prot
Match: EF115_ARATH (Ethylene-responsive transcription factor ERF115 OS=Arabidopsis thaliana GN=ERF115 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.943e-14
Identity = 37/61 (60.66%), Postives = 41/61 (67.21%), Query Frame = -2
Query:  575 VRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXAKRIRGDKAKLNF 757
            +RK  YRG+RQRPWGKWAAEIRDP K  RVWLGTF T           A + +G KAKLNF
Sbjct:   87 LRKRHYRGVRQRPWGKWAAEIRDPQKAARVWLGTFETAEAAALAYDNAALKFKGSKAKLNF 147          
The following BLAST results are available for this feature:
BLAST of CX675654 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
RAP23_ARATH7.351e-3043.98Ethylene-responsive transcription factor RAP2-3 OS... [more]
ERF1_ORYSJ2.897e-1866.67Ethylene-responsive transcription factor 1 OS=Oryz... [more]
RA212_ARATH4.942e-1864.18Ethylene-responsive transcription factor RAP2-12 O... [more]
ERF71_ARATH4.942e-1867.16Ethylene-responsive transcription factor ERF071 OS... [more]
RAP22_ARATH6.455e-1865.67Ethylene-responsive transcription factor RAP2-2 OS... [more]
ERF73_ARATH2.712e-1666.67Ethylene-responsive transcription factor ERF073 OS... [more]
EF112_ARATH4.626e-1642.22Ethylene-responsive transcription factor ERF112 OS... [more]
EF110_ARATH2.998e-1561.29Ethylene-responsive transcription factor ERF110 OS... [more]
RAP26_ARATH8.724e-1563.33Ethylene-responsive transcription factor RAP2-6 OS... [more]
EF115_ARATH1.943e-1460.66Ethylene-responsive transcription factor ERF115 OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_63G09_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-63G09-M17-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675654 ID=CX675654; Name=CX675654; organism=Citrus sinensis; type=EST; length=776bp
TTTTTTTTTTTTTTTTAATTAAGTACCGAGTCATTAACAACATAAAACAC
AAATTAAAATAAACAAAGTCATTAGCAACATAAAACACAAATTAAAATAA
ACAAAGTCATTAACAACATAAAACACAAAATCAAAACTACATAAACAGCA
TTAAACACAATAACTCAAAACACAGACCCACACGAACACACAGCACGGCC
ACAACTCAATTCGTTTATTATTATTTTTCCTAACACAAGAACTGATTGCT
GTTCAGCTGCTGAGTCGCCGCCACGTCATCAAGCATCCAAAAGTCCACCG
AGTCACACCCACCAGCAACGTTTCCACTCGGCTGACTCATTAATGGCTCC
AATCCCAAAAACGATTCCAAGCGCGAAATTTGCTGGCTCAGCTCAAACTC
GTCGTCTACTGCCCTGGGTTGATAAAACTCATTCTGATACCCAAACCCCA
CCCACGGGGACGGCGCCGGAGCCGGTGGGGTTCCGATGGTTTCAAATCTC
GGCTGAGTCAACTCAGGGGATGGCATGCAGCGTTTCTTAGCCGGGGGTGG
AGCTATTGGCGGCGGCGGCTGAGCGAAGTTGAGCTTGGCCTTGTCGCCGC
GGATACGCTTGGCGGCTTCATCATAAGCTCTTGCGGCTTCTTCGGCTGTG
TTGAAAGTGCCGAGCCAAACGCGGACGCCCTTGTAAGGGTCTCTAATTTC
AGCTGCCCATTTTCCCCACGGCCTCTGCCGTATTCCTCTGTACACGTTCT
TGCGAACTCGCTGAGTCTTCTTCTCC
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