CK939312

Overview
NameCK939312
Unique NameCK939312
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length486
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1638 contig Csv1_Contig1638:1..461. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of CK939312 vs. ExPASy Swiss-Prot
Match: RL391_ARATH (60S ribosomal protein L39-1 OS=Arabidopsis thaliana GN=RPL39A PE=2 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 1.141e-23
Identity = 48/51 (94.12%), Postives = 50/51 (98.04%), Query Frame = 2
Query:   74 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 226
            MPSHK+FMIKKKL KKMRQNRPIPHWIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct:    1 MPSHKSFMIKKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51          
BLAST of CK939312 vs. ExPASy Swiss-Prot
Match: RL39_ORYSJ (60S ribosomal protein L39 OS=Oryza sativa subsp. japonica GN=RPL39 PE=3 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 1.491e-23
Identity = 49/51 (96.08%), Postives = 50/51 (98.04%), Query Frame = 2
Query:   74 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 226
            MPSHKTF IKKKLAKKMRQNRPIP+WIRMRTDNTIRYNAKRRHWRRTKLGF
Sbjct:    1 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51          
BLAST of CK939312 vs. ExPASy Swiss-Prot
Match: RL39_MAIZE (60S ribosomal protein L39 OS=Zea mays GN=RPL39 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.491e-23
Identity = 49/51 (96.08%), Postives = 50/51 (98.04%), Query Frame = 2
Query:   74 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 226
            MPSHKTF IKKKLAKKMRQNRPIP+WIRMRTDNTIRYNAKRRHWRRTKLGF
Sbjct:    1 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51          
BLAST of CK939312 vs. ExPASy Swiss-Prot
Match: RL392_ARATH (60S ribosomal protein L39-2 OS=Arabidopsis thaliana GN=RPL39B PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 3.672e-22
Identity = 46/51 (90.20%), Postives = 49/51 (96.08%), Query Frame = 2
Query:   74 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 226
            MPSHK+FMIKKKL KKMRQNRPIP+WIR+RTDN IRYNAKRRHWRRTKLGF
Sbjct:    1 MPSHKSFMIKKKLGKKMRQNRPIPNWIRLRTDNKIRYNAKRRHWRRTKLGF 51          
BLAST of CK939312 vs. ExPASy Swiss-Prot
Match: RL39_SPOFR (60S ribosomal protein L39 OS=Spodoptera frugiperda GN=RpL39 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 6.481e-19
Identity = 40/49 (81.63%), Postives = 46/49 (93.88%), Query Frame = 2
Query:   74 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKL 220
            M +HKTF+IK+KLAKK++QNRPIP W+RMRT NTIRYNAKRRHWRRTKL
Sbjct:    1 MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKL 49          
BLAST of CK939312 vs. ExPASy Swiss-Prot
Match: RL39_PLUXY (60S ribosomal protein L39 OS=Plutella xylostella GN=RpL39 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 6.481e-19
Identity = 40/49 (81.63%), Postives = 46/49 (93.88%), Query Frame = 2
Query:   74 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKL 220
            M +HKTF+IK+KLAKK++QNRPIP W+RMRT NTIRYNAKRRHWRRTKL
Sbjct:    1 MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKL 49          
BLAST of CK939312 vs. ExPASy Swiss-Prot
Match: RL39_RAT (60S ribosomal protein L39 OS=Rattus norvegicus GN=Rpl39 PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 2.723e-17
Identity = 39/50 (78.00%), Postives = 43/50 (86.00%), Query Frame = 2
Query:   74 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLG 223
            M SHKTF IK+ LAKK +QNRPIP WIRM+T N IRYN+KRRHWRRTKLG
Sbjct:    1 MSSHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLG 50          
BLAST of CK939312 vs. ExPASy Swiss-Prot
Match: RL39_MOUSE (60S ribosomal protein L39 OS=Mus musculus GN=Rpl39 PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 2.723e-17
Identity = 39/50 (78.00%), Postives = 43/50 (86.00%), Query Frame = 2
Query:   74 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLG 223
            M SHKTF IK+ LAKK +QNRPIP WIRM+T N IRYN+KRRHWRRTKLG
Sbjct:    1 MSSHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLG 50          
BLAST of CK939312 vs. ExPASy Swiss-Prot
Match: RL39_ICTPU (60S ribosomal protein L39 OS=Ictalurus punctatus GN=rpl39 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.723e-17
Identity = 39/50 (78.00%), Postives = 43/50 (86.00%), Query Frame = 2
Query:   74 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLG 223
            M SHKTF IK+ LAKK +QNRPIP WIRM+T N IRYN+KRRHWRRTKLG
Sbjct:    1 MASHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLG 50          
BLAST of CK939312 vs. ExPASy Swiss-Prot
Match: RL39_HUMAN (60S ribosomal protein L39 OS=Homo sapiens GN=RPL39 PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 2.723e-17
Identity = 39/50 (78.00%), Postives = 43/50 (86.00%), Query Frame = 2
Query:   74 MPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLG 223
            M SHKTF IK+ LAKK +QNRPIP WIRM+T N IRYN+KRRHWRRTKLG
Sbjct:    1 MSSHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLG 50          
The following BLAST results are available for this feature:
BLAST of CK939312 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
RL391_ARATH1.141e-2394.1260S ribosomal protein L39-1 OS=Arabidopsis thalian... [more]
RL39_ORYSJ1.491e-2396.0860S ribosomal protein L39 OS=Oryza sativa subsp. j... [more]
RL39_MAIZE1.491e-2396.0860S ribosomal protein L39 OS=Zea mays GN=RPL39 PE=... [more]
RL392_ARATH3.672e-2290.2060S ribosomal protein L39-2 OS=Arabidopsis thalian... [more]
RL39_SPOFR6.481e-1981.6360S ribosomal protein L39 OS=Spodoptera frugiperda... [more]
RL39_PLUXY6.481e-1981.6360S ribosomal protein L39 OS=Plutella xylostella G... [more]
RL39_RAT2.723e-1778.0060S ribosomal protein L39 OS=Rattus norvegicus GN=... [more]
RL39_MOUSE2.723e-1778.0060S ribosomal protein L39 OS=Mus musculus GN=Rpl39... [more]
RL39_ICTPU2.723e-1778.0060S ribosomal protein L39 OS=Ictalurus punctatus G... [more]
RL39_HUMAN2.723e-1778.0060S ribosomal protein L39 OS=Homo sapiens GN=RPL39... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004752_B04 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IVF_B04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939312 ID=CK939312; Name=CK939312; organism=Citrus sinensis; type=EST; length=486bp
AGGGACACATCGTTCAATCTCAGGATTTTACAACTAGGGTTTTCGCTGCA
GCCGATCGAACTAAGAAGCGAAAATGCCGTCACACAAGACATTTATGATC
AAGAAGAAGCTTGCCAAGAAGATGAGGCAAAACAGGCCCATCCCTCACTG
GATCCGTATGCGCACCGACAACACCATCAGATACAACGCAAAGCGCAGGC
ACTGGCGCCGCACAAAGCTTGGATTCTAAGGTGTTTAGGATCAGATGGAT
TTGTTGTTGAGTTTGTTTTAAGCTTATGTTCGAGTAATTTAGACTATGAT
ACCTGGCCTTATGTTTTATATTTAGTTTTGAGAAACTCATTTGTATAAGG
AACTCATTGAGAGTCCTTATTTTATTTTGTGCCCTCTTGAGTTAATTTGG
ACTTATGAAATTTGACTTGTTTCGATCAAAAAAAAAAAAAAAAAAAAAAA
AAAAAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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