CK939311

Overview
NameCK939311
Unique NameCK939311
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length255
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9788 contig Csv1_Contig9788:153..407. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK939311 vs. ExPASy Swiss-Prot
Match: RS18_ARATH (40S ribosomal protein S18 OS=Arabidopsis thaliana GN=RPS18A PE=1 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 1.093e-38
Identity = 76/84 (90.48%), Postives = 80/84 (95.24%), Query Frame = 3
Query:    3 NTNVHGKQRIMCALTSIKGIGRRXANIVCKKADIDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS 254
            NTNV GKQ+IM ALTSIKGIGRR ANIVCKKAD+DMNKRAGELSAAE+DNLM +VANPRQFKIPDWFLNRQKDYKDGKYSQVVS
Sbjct:   17 NTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAEIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVS 100          
BLAST of CK939311 vs. ExPASy Swiss-Prot
Match: RS18_BRABE (40S ribosomal protein S18 OS=Branchiostoma belcheri GN=RPS18 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.430e-30
Identity = 59/84 (70.24%), Postives = 75/84 (89.29%), Query Frame = 3
Query:    3 NTNVHGKQRIMCALTSIKGIGRRXANIVCKKADIDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS 254
            NTN+ G+++IM ALTSIKG+GRR +NIVCKKADID++KRAGELS  E++ L+ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++
Sbjct:   17 NTNIDGRRKIMFALTSIKGVGRRYSNIVCKKADIDLSKRAGELSDEEVERLITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVMA 100          
BLAST of CK939311 vs. ExPASy Swiss-Prot
Match: RS18_AEQIR (40S ribosomal protein S18 OS=Aequipecten irradians GN=RPS18 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 9.272e-30
Identity = 56/84 (66.67%), Postives = 75/84 (89.29%), Query Frame = 3
Query:    3 NTNVHGKQRIMCALTSIKGIGRRXANIVCKKADIDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS 254
            NTN+ GK++IM A+T+IKG+GRR AN+VCKKAD+D+ KRAGELS  E++ ++ +++NPRQ+KIP+WFLNRQKD KDGKYSQV+S
Sbjct:   17 NTNIDGKRKIMFAMTAIKGMGRRYANVVCKKADVDITKRAGELSEDEIERVITIMSNPRQYKIPNWFLNRQKDVKDGKYSQVMS 100          
BLAST of CK939311 vs. ExPASy Swiss-Prot
Match: RS18_CHLRE (40S ribosomal protein S18 OS=Chlamydomonas reinhardtii GN=RPS18 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.480e-27
Identity = 54/84 (64.29%), Postives = 71/84 (84.52%), Query Frame = 3
Query:    3 NTNVHGKQRIMCALTSIKGIGRRXANIVCKKADIDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS 254
            NTNV GK +IM A+T+I+GIGRR +N+VCKKA++D+ K AGE SA EL+ +M +VANPR +KIPDWFLNRQKD+K G++SQ+ S
Sbjct:   18 NTNVDGKNKIMYAMTAIRGIGRRFSNLVCKKAEVDLRKAAGECSADELERMMGIVANPRAYKIPDWFLNRQKDHKTGRFSQLTS 101          
BLAST of CK939311 vs. ExPASy Swiss-Prot
Match: RS18_SPOFR (40S ribosomal protein S18 OS=Spodoptera frugiperda GN=RpS18 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.525e-27
Identity = 52/84 (61.90%), Postives = 72/84 (85.71%), Query Frame = 3
Query:    3 NTNVHGKQRIMCALTSIKGIGRRXANIVCKKADIDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS 254
            NTN+ GK+++M A+T+IKG+GRR +NIV KKADID++KRAGE +  E++ ++ +++NPRQ+KIPDWFLNRQKD  DGKYSQ+ S
Sbjct:   17 NTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIVTIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTS 100          
BLAST of CK939311 vs. ExPASy Swiss-Prot
Match: RS18_DANRE (40S ribosomal protein S18 OS=Danio rerio GN=rps18 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.525e-27
Identity = 52/84 (61.90%), Postives = 73/84 (86.90%), Query Frame = 3
Query:    3 NTNVHGKQRIMCALTSIKGIGRRXANIVCKKADIDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS 254
            NTN+ G+++I  A+T+IKG+GRR A++V +KADID+NKRAGEL+  E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++
Sbjct:   17 NTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLNKRAGELTEDEVERVVTIMQNPRQYKIPDWFLNRQKDIKDGKYSQVLA 100          
BLAST of CK939311 vs. ExPASy Swiss-Prot
Match: RS18_SCHPO (40S ribosomal protein S18 OS=Schizosaccharomyces pombe GN=rps18a PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.307e-27
Identity = 54/84 (64.29%), Postives = 68/84 (80.95%), Query Frame = 3
Query:    3 NTNVHGKQRIMCALTSIKGIGRRXANIVCKKADIDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS 254
            NTNV GK ++M A+T IKG+GRR ANIVCKKADIDM+KRAGEL+  EL+ ++ ++ NP QFKIP WFLNRQKD  DGK  Q+++
Sbjct:   17 NTNVDGKVKVMFAMTQIKGVGRRYANIVCKKADIDMSKRAGELTTEELERIVTIIQNPSQFKIPSWFLNRQKDINDGKSFQLLA 100          
BLAST of CK939311 vs. ExPASy Swiss-Prot
Match: RS18_ICTPU (40S ribosomal protein S18 OS=Ictalurus punctatus GN=rps18 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 9.595e-27
Identity = 51/84 (60.71%), Postives = 73/84 (86.90%), Query Frame = 3
Query:    3 NTNVHGKQRIMCALTSIKGIGRRXANIVCKKADIDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS 254
            NTN+ G+++I  A+T+IKG+GRR A++V +KADID++KRAGEL+  E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++
Sbjct:   17 NTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLSKRAGELTEDEVERVVTIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLA 100          
BLAST of CK939311 vs. ExPASy Swiss-Prot
Match: RS18_RAT (40S ribosomal protein S18 OS=Rattus norvegicus GN=Rps18 PE=1 SV=3)

HSP 1 Score: 118.242 bits (295), Expect = 1.253e-26
Identity = 51/84 (60.71%), Postives = 72/84 (85.71%), Query Frame = 3
Query:    3 NTNVHGKQRIMCALTSIKGIGRRXANIVCKKADIDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS 254
            NTN+ G+++I  A+T+IKG+GRR A++V +KADID+ KRAGEL+  E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++
Sbjct:   17 NTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLA 100          
BLAST of CK939311 vs. ExPASy Swiss-Prot
Match: RS18_PIG (40S ribosomal protein S18 OS=Sus scrofa GN=RPS18 PE=2 SV=3)

HSP 1 Score: 118.242 bits (295), Expect = 1.253e-26
Identity = 51/84 (60.71%), Postives = 72/84 (85.71%), Query Frame = 3
Query:    3 NTNVHGKQRIMCALTSIKGIGRRXANIVCKKADIDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS 254
            NTN+ G+++I  A+T+IKG+GRR A++V +KADID+ KRAGEL+  E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++
Sbjct:   17 NTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLA 100          
The following BLAST results are available for this feature:
BLAST of CK939311 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
RS18_ARATH1.093e-3890.4840S ribosomal protein S18 OS=Arabidopsis thaliana ... [more]
RS18_BRABE1.430e-3070.2440S ribosomal protein S18 OS=Branchiostoma belcher... [more]
RS18_AEQIR9.272e-3066.6740S ribosomal protein S18 OS=Aequipecten irradians... [more]
RS18_CHLRE1.480e-2764.2940S ribosomal protein S18 OS=Chlamydomonas reinhar... [more]
RS18_SPOFR2.525e-2761.9040S ribosomal protein S18 OS=Spodoptera frugiperda... [more]
RS18_DANRE2.525e-2761.9040S ribosomal protein S18 OS=Danio rerio GN=rps18 ... [more]
RS18_SCHPO4.307e-2764.2940S ribosomal protein S18 OS=Schizosaccharomyces p... [more]
RS18_ICTPU9.595e-2760.7140S ribosomal protein S18 OS=Ictalurus punctatus G... [more]
RS18_RAT1.253e-2660.7140S ribosomal protein S18 OS=Rattus norvegicus GN=... [more]
RS18_PIG1.253e-2660.7140S ribosomal protein S18 OS=Sus scrofa GN=RPS18 P... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004752_B03 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IVF_B03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939311 ID=CK939311; Name=CK939311; organism=Citrus sinensis; type=EST; length=255bp
TGAACACTAACGTCCACGGGAAGCAGAGGATTATGTGTGCTCTTACTTCA
ATTAAGGGTATTGGAAGGCGNNNGGCTAATATCGTTTGCAAGAAAGCTGA
TATTGACATGAACAAGAGGGCCGGGGAACTATCTGCTGCTGAACTTGACA
ATCTCATGGTCGTTGTTGCAAATCCCCGACAGTTTAAAATCCCTGATTGG
TTCTTGAACAGACAGAAGGATTACAAGGATGGAAAGTATTCTCAGGTTGT
ATCCA
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