CK939311
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK939311 vs. ExPASy Swiss-Prot
Match: RS18_ARATH (40S ribosomal protein S18 OS=Arabidopsis thaliana GN=RPS18A PE=1 SV=1) HSP 1 Score: 158.303 bits (399), Expect = 1.093e-38 Identity = 76/84 (90.48%), Postives = 80/84 (95.24%), Query Frame = 3 Query: 3 NTNVHGKQRIMCALTSIKGIGRRXANIVCKKADIDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS 254 NTNV GKQ+IM ALTSIKGIGRR ANIVCKKAD+DMNKRAGELSAAE+DNLM +VANPRQFKIPDWFLNRQKDYKDGKYSQVVS Sbjct: 17 NTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAEIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVS 100
BLAST of CK939311 vs. ExPASy Swiss-Prot
Match: RS18_BRABE (40S ribosomal protein S18 OS=Branchiostoma belcheri GN=RPS18 PE=2 SV=1) HSP 1 Score: 131.339 bits (329), Expect = 1.430e-30 Identity = 59/84 (70.24%), Postives = 75/84 (89.29%), Query Frame = 3 Query: 3 NTNVHGKQRIMCALTSIKGIGRRXANIVCKKADIDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS 254 NTN+ G+++IM ALTSIKG+GRR +NIVCKKADID++KRAGELS E++ L+ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++ Sbjct: 17 NTNIDGRRKIMFALTSIKGVGRRYSNIVCKKADIDLSKRAGELSDEEVERLITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVMA 100
BLAST of CK939311 vs. ExPASy Swiss-Prot
Match: RS18_AEQIR (40S ribosomal protein S18 OS=Aequipecten irradians GN=RPS18 PE=2 SV=1) HSP 1 Score: 128.642 bits (322), Expect = 9.272e-30 Identity = 56/84 (66.67%), Postives = 75/84 (89.29%), Query Frame = 3 Query: 3 NTNVHGKQRIMCALTSIKGIGRRXANIVCKKADIDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS 254 NTN+ GK++IM A+T+IKG+GRR AN+VCKKAD+D+ KRAGELS E++ ++ +++NPRQ+KIP+WFLNRQKD KDGKYSQV+S Sbjct: 17 NTNIDGKRKIMFAMTAIKGMGRRYANVVCKKADVDITKRAGELSEDEIERVITIMSNPRQYKIPNWFLNRQKDVKDGKYSQVMS 100
BLAST of CK939311 vs. ExPASy Swiss-Prot
Match: RS18_CHLRE (40S ribosomal protein S18 OS=Chlamydomonas reinhardtii GN=RPS18 PE=2 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 1.480e-27 Identity = 54/84 (64.29%), Postives = 71/84 (84.52%), Query Frame = 3 Query: 3 NTNVHGKQRIMCALTSIKGIGRRXANIVCKKADIDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS 254 NTNV GK +IM A+T+I+GIGRR +N+VCKKA++D+ K AGE SA EL+ +M +VANPR +KIPDWFLNRQKD+K G++SQ+ S Sbjct: 18 NTNVDGKNKIMYAMTAIRGIGRRFSNLVCKKAEVDLRKAAGECSADELERMMGIVANPRAYKIPDWFLNRQKDHKTGRFSQLTS 101
BLAST of CK939311 vs. ExPASy Swiss-Prot
Match: RS18_SPOFR (40S ribosomal protein S18 OS=Spodoptera frugiperda GN=RpS18 PE=2 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 2.525e-27 Identity = 52/84 (61.90%), Postives = 72/84 (85.71%), Query Frame = 3 Query: 3 NTNVHGKQRIMCALTSIKGIGRRXANIVCKKADIDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS 254 NTN+ GK+++M A+T+IKG+GRR +NIV KKADID++KRAGE + E++ ++ +++NPRQ+KIPDWFLNRQKD DGKYSQ+ S Sbjct: 17 NTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIVTIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTS 100
BLAST of CK939311 vs. ExPASy Swiss-Prot
Match: RS18_DANRE (40S ribosomal protein S18 OS=Danio rerio GN=rps18 PE=2 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 2.525e-27 Identity = 52/84 (61.90%), Postives = 73/84 (86.90%), Query Frame = 3 Query: 3 NTNVHGKQRIMCALTSIKGIGRRXANIVCKKADIDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS 254 NTN+ G+++I A+T+IKG+GRR A++V +KADID+NKRAGEL+ E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++ Sbjct: 17 NTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLNKRAGELTEDEVERVVTIMQNPRQYKIPDWFLNRQKDIKDGKYSQVLA 100
BLAST of CK939311 vs. ExPASy Swiss-Prot
Match: RS18_SCHPO (40S ribosomal protein S18 OS=Schizosaccharomyces pombe GN=rps18a PE=1 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 4.307e-27 Identity = 54/84 (64.29%), Postives = 68/84 (80.95%), Query Frame = 3 Query: 3 NTNVHGKQRIMCALTSIKGIGRRXANIVCKKADIDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS 254 NTNV GK ++M A+T IKG+GRR ANIVCKKADIDM+KRAGEL+ EL+ ++ ++ NP QFKIP WFLNRQKD DGK Q+++ Sbjct: 17 NTNVDGKVKVMFAMTQIKGVGRRYANIVCKKADIDMSKRAGELTTEELERIVTIIQNPSQFKIPSWFLNRQKDINDGKSFQLLA 100
BLAST of CK939311 vs. ExPASy Swiss-Prot
Match: RS18_ICTPU (40S ribosomal protein S18 OS=Ictalurus punctatus GN=rps18 PE=2 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 9.595e-27 Identity = 51/84 (60.71%), Postives = 73/84 (86.90%), Query Frame = 3 Query: 3 NTNVHGKQRIMCALTSIKGIGRRXANIVCKKADIDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS 254 NTN+ G+++I A+T+IKG+GRR A++V +KADID++KRAGEL+ E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++ Sbjct: 17 NTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLSKRAGELTEDEVERVVTIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLA 100
BLAST of CK939311 vs. ExPASy Swiss-Prot
Match: RS18_RAT (40S ribosomal protein S18 OS=Rattus norvegicus GN=Rps18 PE=1 SV=3) HSP 1 Score: 118.242 bits (295), Expect = 1.253e-26 Identity = 51/84 (60.71%), Postives = 72/84 (85.71%), Query Frame = 3 Query: 3 NTNVHGKQRIMCALTSIKGIGRRXANIVCKKADIDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS 254 NTN+ G+++I A+T+IKG+GRR A++V +KADID+ KRAGEL+ E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++ Sbjct: 17 NTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLA 100
BLAST of CK939311 vs. ExPASy Swiss-Prot
Match: RS18_PIG (40S ribosomal protein S18 OS=Sus scrofa GN=RPS18 PE=2 SV=3) HSP 1 Score: 118.242 bits (295), Expect = 1.253e-26 Identity = 51/84 (60.71%), Postives = 72/84 (85.71%), Query Frame = 3 Query: 3 NTNVHGKQRIMCALTSIKGIGRRXANIVCKKADIDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVS 254 NTN+ G+++I A+T+IKG+GRR A++V +KADID+ KRAGEL+ E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++ Sbjct: 17 NTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLA 100 The following BLAST results are available for this feature:
BLAST of CK939311 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 23
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Sequences
The
following sequences are available for this feature:
EST sequence >CK939311 ID=CK939311; Name=CK939311; organism=Citrus sinensis; type=EST; length=255bpback to top |