CK939310

Overview
NameCK939310
Unique NameCK939310
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length747
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1708 contig Csv1_Contig1708:3..749. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK939310 vs. ExPASy Swiss-Prot
Match: VDAC2_SOLTU (Mitochondrial outer membrane protein porin of 36 kDa OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 360.918 bits (925), Expect = 4.110e-99
Identity = 179/225 (79.56%), Postives = 199/225 (88.44%), Query Frame = 3
Query:   72 MVKGPRLYSEIGKKARDLLYKDYQSDHKFTVTTYTSAGGAITSSGVKKGELFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTGIGFTANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDIGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQXXLDPLT 746
            MVKGP LYS+IGKKARDLLY+DY SDHKFTVTTY++ G AIT+SG+KKGELFLADVSTQLKNKNITTDVKVDTNSN++TTITVDEPAPGLK+IFSF+VPDQ+SGKVELQY HEYAGI+T IG TA+P+            ALGTDLSFDTATGNFTKCNAGLS++ +DLIASL LND GDT++ASYYH V P+TNTAVGAELTHSFSSNENTLTIGTQ  LDPLT
Sbjct:    1 MVKGPGLYSDIGKKARDLLYRDYVSDHKFTVTTYSTTGVAITASGLKKGELFLADVSTQLKNKNITTDVKVDTNSNVYTTITVDEPAPGLKTIFSFVVPDQKSGKVELQYLHEYAGINTSIGLTASPLVNFSGVAGNNTVALGTDLSFDTATGNFTKCNAGLSFSSSDLIASLALNDKGDTVSASYYHTVKPVTNTAVGAELTHSFSSNENTLTIGTQHLLDPLT 225          
BLAST of CK939310 vs. ExPASy Swiss-Prot
Match: VDAC1_SOLTU (Mitochondrial outer membrane protein porin of 34 kDa OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 335.109 bits (858), Expect = 2.415e-91
Identity = 164/225 (72.89%), Postives = 188/225 (83.56%), Query Frame = 3
Query:   72 MVKGPRLYSEIGKKARDLLYKDYQSDHKFTVTTYTSAGGAITSSGVKKGELFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTGIGFTANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDIGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQXXLDPLT 746
            M KGP LY+EIGKKARDLLYKDYQSDHKF++TTY+  G  ITSSG KKG+LFLADV+TQLKNKN+TTD+KVDTNSNLFTTITVDE APGLK+I SF VPDQRSGK+E+QY H+YAGI T +G TANPI            ALGTD+SFDT TG+FTKCNAGLS+T+ DL+ASL LN+ GD L ASYYH VSPLT+TAVGAE+ HSFS+NEN +T+GTQ  LDPLT
Sbjct:    1 MGKGPGLYTEIGKKARDLLYKDYQSDHKFSITTYSPTGVVITSSGSKKGDLFLADVNTQLKNKNVTTDIKVDTNSNLFTTITVDEAAPGLKTILSFRVPDQRSGKLEVQYLHDYAGICTSVGLTANPIVNFSGVVGTNIIALGTDVSFDTKTGDFTKCNAGLSFTNADLVASLNLNNKGDNLTASYYHTVSPLTSTAVGAEVNHSFSTNENIITVGTQHRLDPLT 225          
BLAST of CK939310 vs. ExPASy Swiss-Prot
Match: VDAC_PEA (Outer plastidial membrane protein porin OS=Pisum sativum GN=POR1 PE=1 SV=2)

HSP 1 Score: 306.605 bits (784), Expect = 9.198e-83
Identity = 150/225 (66.67%), Postives = 177/225 (78.67%), Query Frame = 3
Query:   72 MVKGPRLYSEIGKKARDLLYKDYQSDHKFTVTTYTSAGGAITSSGVKKGELFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTGIGFTANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDIGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQXXLDPLT 746
            MVKGP LY++IGKKARDLLYKDY SD KFT++TY+  G AITSSG KKGELFL DV+TQLKNKNITTD+KVDTNSNLFTTITV+EPAPG+K+I SF VP+Q SGKVELQY HEYAGIS+ +G  ANPI            A G D+SFDT  G  TK NA +++   DLI SLTLN+ GD L+ASYYH ++PL+NTAVG +++H FS+ ENT T+GTQ  LDPLT
Sbjct:    1 MVKGPGLYTDIGKKARDLLYKDYHSDKKFTISTYSPTGVAITSSGTKKGELFLGDVNTQLKNKNITTDIKVDTNSNLFTTITVNEPAPGVKAILSFKVPEQTSGKVELQYLHEYAGISSSVGLKANPIVNFSSVIGTNALAFGADISFDTKLGELTKSNAAVNFVKDDLIGSLTLNEKGDLLSASYYHAINPLSNTAVGVDISHRFSTKENTFTLGTQHALDPLT 225          
BLAST of CK939310 vs. ExPASy Swiss-Prot
Match: VDAC1_ARATH (Mitochondrial outer membrane protein porin 1 OS=Arabidopsis thaliana GN=At3g01280 PE=1 SV=3)

HSP 1 Score: 298.516 bits (763), Expect = 2.505e-80
Identity = 150/225 (66.67%), Postives = 176/225 (78.22%), Query Frame = 3
Query:   72 MVKGPRLYSEIGKKARDLLYKDYQSDHKFTVTTYTSAGGAITSSGVKKGELFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTGIGFTANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDIGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQXXLDPLT 746
            MVKGP LY+EIGKKARDLLYKD+ SD KF++TT++ AG AITS+G KKG+L L DV+ Q + KNITTD+KV T+S    T TVDE APGL+SIFSF VPDQ SGKVELQY HEYAGIST +G T NP             A+GTD+SFDT +GNFTK NAGLS+T  DLIASLT+ND GD LNASYYHIV+PL NTAVGAE++H  SS ++T+T+GTQ  LDPLT
Sbjct:    1 MVKGPGLYTEIGKKARDLLYKDHNSDQKFSITTFSPAGVAITSTGTKKGDLLLGDVAFQSRRKNITTDLKVCTDSTFLITATVDEAAPGLRSIFSFKVPDQNSGKVELQYLHEYAGISTSMGLTQNPTVNFSGVIGSNVLAVGTDVSFDTKSGNFTKINAGLSFTKEDLIASLTVNDKGDLLNASYYHIVNPLFNTAVGAEVSHKLSSKDSTITVGTQHSLDPLT 225          
BLAST of CK939310 vs. ExPASy Swiss-Prot
Match: VDAC1_ORYSJ (Mitochondrial outer membrane protein porin OS=Oryza sativa subsp. japonica GN=VDAC1 PE=1 SV=3)

HSP 1 Score: 288.115 bits (736), Expect = 3.386e-77
Identity = 144/222 (64.86%), Postives = 173/222 (77.93%), Query Frame = 3
Query:   81 GPRLYSEIGKKARDLLYKDYQSDHKFTVTTYTSAGGAITSSGVKKGELFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTGIGFTANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDIGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQXXLDPLT 746
            GP LY EIGKKARDLLY+DYQ+DHKFT+TTYTS G AIT++  KK +L   ++ +Q+KNKNIT DVK +++SN+ TT+TVDE  PGLKSI SF VPDQRSGK ELQY H+YAG+S  IG TA+P+            A+G D+S DTATGN TK NAGLS+++ DLIASL LN+ GD+L ASYYHIV+  + TAVGAELTHSFSSNEN+LT GTQ  LDPLT
Sbjct:    3 GPGLYPEIGKKARDLLYRDYQTDHKFTLTTYTSNGVAITATSTKKADLIFGEIQSQIKNKNITVDVKANSDSNVVTTVTVDELTPGLKSILSFAVPDQRSGKFELQYSHDYAGVSASIGLTASPVVNLSSVFGTKALAVGADVSLDTATGNLTKYNAGLSFSNDDLIASLNLNNKGDSLTASYYHIVNH-SATAVGAELTHSFSSNENSLTFGTQHTLDPLT 223          
BLAST of CK939310 vs. ExPASy Swiss-Prot
Match: VDAC1_WHEAT (Mitochondrial outer membrane porin OS=Triticum aestivum GN=VDAC1 PE=2 SV=1)

HSP 1 Score: 278.485 bits (711), Expect = 2.683e-74
Identity = 142/223 (63.68%), Postives = 171/223 (76.68%), Query Frame = 3
Query:   81 GPRLYSEIGKKARDLLYKDYQSDHKFTVTTYTSAGGAITSSGVKKGELFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDE-PAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTGIGFTANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDIGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQXXLDPLT 746
            GP LYS IGKKA+DLLY+DYQ+DHKFT+TTYT+ G AIT++  KK +L + ++ +Q+KNKNIT DVK ++ SN+ TTIT D+  APGLK+I SF VPDQ+SGKVELQY H+YAGI+  IG TANP+            A+G D+S DTAT NF K NA LSYT+ DLIASL LN+ GD+L ASYYHIV   + TAVGAELTHSFSSNEN+LT GTQ  LDPLT
Sbjct:    3 GPGLYSGIGKKAKDLLYRDYQTDHKFTLTTYTANGPAITATSTKKADLTVGEIQSQIKNKNITVDVKANSASNVITTITADDLAAPGLKTILSFAVPDQKSGKVELQYLHDYAGINASIGLTANPVVNLSGAFGTSALAVGADVSLDTATKNFAKYNAALSYTNQDLIASLNLNNKGDSLTASYYHIVEK-SGTAVGAELTHSFSSNENSLTFGTQHTLDPLT 224          
BLAST of CK939310 vs. ExPASy Swiss-Prot
Match: VDAC2_ARATH (Mitochondrial outer membrane protein porin 2 OS=Arabidopsis thaliana GN=HSR2 PE=1 SV=3)

HSP 1 Score: 275.018 bits (702), Expect = 2.966e-73
Identity = 136/225 (60.44%), Postives = 169/225 (75.11%), Query Frame = 3
Query:   72 MVKGPRLYSEIGKKARDLLYKDYQSDHKFTVTTYTSAGGAITSSGVKKGELFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDEPAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTGIGFTANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDIGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQXXLDPLT 746
            MVKGP LY+EIGKKARDLLY+DYQ D KF+VTTY+S G AIT++G  KG LFL DV+TQ+KN N T DVKV T+S+L TT+T DEPAPGLK I    +PD +SGK E+QY H+YAGIST +GFTA PI            +LGTD++++T +GNF   NAG ++T  DL ASL LND G+ LNASYY IVSP  +T VGAE++H+F++ EN +T+GTQ  LDPLT
Sbjct:    1 MVKGPGLYTEIGKKARDLLYRDYQGDQKFSVTTYSSTGVAITTTGTNKGSLFLGDVATQVKNNNFTADVKVSTDSSLLTTLTFDEPAPGLKVIVQAKLPDHKSGKAEVQYFHDYAGISTSVGFTATPIVNFSGVVGTNGLSLGTDVAYNTESGNFKHFNAGFNFTKDDLTASLILNDKGEKLNASYYQIVSP--STVVGAEISHNFTTKENAITVGTQHALDPLT 223          
BLAST of CK939310 vs. ExPASy Swiss-Prot
Match: VDAC_MAIZE (Outer plastidial membrane protein porin OS=Zea mays GN=POR1 PE=2 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 8.096e-63
Identity = 124/226 (54.87%), Postives = 157/226 (69.47%), Query Frame = 3
Query:   72 MVKGPRLYSEIGKKARDLLYKDYQSDHKFTVTTYTSAGGAITSSGVKKGELFLADVSTQLKNKNITTDVKVDTNSNLFTTITVDE-PAPGLKSIFSFIVPDQRSGKVELQYQHEYAGISTGIGFTANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDIGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQXXLDPLT 746
            MV    LY++IGKK RDLLYKDY +  KF +TT +  G AIT++G +K E    ++ TQ+KNK +T DVK ++ S+L TTITVDE   PGLKSI + +VPDQRSGK+E QY HEYAG++  +G  +NP+            ++G D+SFDTAT +FTK NA LS T  DLIASL LN+ GDTL ASYYH+V   + TAVGAEL+HS S NE+TL  G+Q  LDP T
Sbjct:    1 MVVAVGLYTDIGKKTRDLLYKDYNTHQKFCLTTSSPNGVAITAAGTRKNESIFGELHTQIKNKKLTVDVKANSESDLLTTITVDEFGTPGLKSIINLVVPDQRSGKLEFQYLHEYAGVNASVGLNSNPMVNLSGAFGSKALSVGVDVSFDTATSDFTKYNAALSLTSPDLIASLHLNNHGDTLVASYYHLVKNHSGTAVGAELSHSMSRNESTLIFGSQHSLDPHT 226          
BLAST of CK939310 vs. ExPASy Swiss-Prot
Match: VDAC2_XENLA (Voltage-dependent anion-selective channel protein 2 OS=Xenopus laevis GN=vdac2 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.449e-11
Identity = 65/228 (28.51%), Postives = 95/228 (41.67%), Query Frame = 3
Query:   84 PRLYSEIGKKARDLLYKDYQSD-HKFTVTTYTSAGGAITSSGVKKGELFLADVSTQLKNK----NITTDVKVDTNSNLFTTITV-DEPAPGLKSIFSFIV---PDQRSGKVELQYQHEYAGISTGIGFT-ANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDIGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQXXLD 737
            P  Y+++GK ARD+  K Y     K  V T ++ G   T+SG    +    + S + K K     +T   K +T++ L T I + D+ A GLK  F         ++SGKV+  Y+ EY  +   + F  A P               G  ++FD+A    TK N  + Y   D      +ND G     S Y  VS    TAV   L  +  +N     I  +  LD
Sbjct:    3 PPSYADLGKSARDIFNKGYGFGLVKLDVKTKSATGVEFTTSGTSNTDSGKVNGSLETKYKWGEYGLTFTEKWNTDNTLGTEIAIEDQIAKGLKLTFDTTFSPNTGKKSGKVKAAYKQEYVNLGCDVDFDFAGPAIHGSAVVGYEGWLAGYQMTFDSAKSKLTKNNFAVGYKTGDFQLHTNVND-GSEFAGSIYQKVSDKMETAV--NLAWTSGNNSTRFGIAAKYQLD 227          
BLAST of CK939310 vs. ExPASy Swiss-Prot
Match: VDAC_DROME (Voltage-dependent anion-selective channel OS=Drosophila melanogaster GN=porin PE=1 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 9.392e-11
Identity = 60/228 (26.32%), Postives = 101/228 (44.30%), Query Frame = 3
Query:   84 PRLYSEIGKKARDLLYKDYQSD-HKFTVTTYTSAGGAITSSG---VKKGELF-LADVSTQLKNKNITTDVKVDTNSNLFTTITV-DEPAPGLK-SIFSFIVPD--QRSGKVELQYQHEYAGISTGIGF-TANPIXXXXXXXXXXXXALGTDLSFDTATGNFTKCNAGLSYTHTDLIASLTLNDIGDTLNASYYHIVSPLTNTAVGAELTHSFSSNENTLTIGTQXXLD 737
            P  YS++GK+ARD+  K Y     K  + T TS+G    ++G    + G++F   +   ++K+  +T   K +T++ LFT + V D+   GLK S+     P    ++GK ++ Y HE     + +      P+              G   +FDT     T  N  L YT  D +    +ND G   + S +   S   +  VG +L+ +  ++     IG +  LD
Sbjct:    3 PPSYSDLGKQARDIFSKGYNFGLWKLDLKTKTSSGIEFNTAGHSNQESGKVFGSLETKYKVKDYGLTLTEKWNTDNTLFTEVAVQDQLLEGLKLSLEGNFAPQSGNKNGKFKVAYGHENVKADSDVNIDLKGPLINASAVLGYQGWLAGYQTAFDTQQSKLTTNNFALGYTTKDFVLHTAVND-GQEFSGSIFQRTSDKLD--VGVQLSWASGTSNTKFAIGAKYQLD 227          
The following BLAST results are available for this feature:
BLAST of CK939310 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
VDAC2_SOLTU4.110e-9979.56Mitochondrial outer membrane protein porin of 36 k... [more]
VDAC1_SOLTU2.415e-9172.89Mitochondrial outer membrane protein porin of 34 k... [more]
VDAC_PEA9.198e-8366.67Outer plastidial membrane protein porin OS=Pisum s... [more]
VDAC1_ARATH2.505e-8066.67Mitochondrial outer membrane protein porin 1 OS=Ar... [more]
VDAC1_ORYSJ3.386e-7764.86Mitochondrial outer membrane protein porin OS=Oryz... [more]
VDAC1_WHEAT2.683e-7463.68Mitochondrial outer membrane porin OS=Triticum aes... [more]
VDAC2_ARATH2.966e-7360.44Mitochondrial outer membrane protein porin 2 OS=Ar... [more]
VDAC_MAIZE8.096e-6354.87Outer plastidial membrane protein porin OS=Zea may... [more]
VDAC2_XENLA1.449e-1128.51Voltage-dependent anion-selective channel protein ... [more]
VDAC_DROME9.392e-1126.32Voltage-dependent anion-selective channel OS=Droso... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004752_E03 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IVF_E03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939310 ID=CK939310; Name=CK939310; organism=Citrus sinensis; type=EST; length=747bp
GGGGGTCCTCCAGCTGAAATAATCAAAACTAATATTTCTCACCGTTTCCT
TTCCATTTTCTCTGGAGAATCATGGTGAAAGGCCCCAGGCTCTACTCTGA
AATCGGCAAGAAAGCCCGAGATCTTCTCTACAAGGACTACCAGAGCGACC
ACAAGTTCACTGTCACTACTTACACCTCAGCTGGAGGCGCGATAACTTCG
AGTGGTGTTAAGAAAGGTGAGCTTTTTTTGGCTGATGTCAGCACTCAGTT
GAAGAACAAGAACATCACTACTGATGTTAAAGTTGATACTAACTCTAATC
TTTTTACAACCATCACTGTCGATGAGCCTGCTCCTGGACTCAAGTCAATC
TTTAGCTTTATCGTTCCTGATCAGAGATCTGGCAAGGTGGAACTCCAATA
TCAGCATGAATATGCTGGAATAAGCACTGGCATTGGATTCACTGCAAATC
CCATTGTTAACTTTTCTGGTGTGGTTGGAAACAATTCTGTTGCTCTTGGG
ACTGATCTCTCATTTGATACTGCCACTGGCAACTTCACCAAGTGCAATGC
GGGGCTGAGCTATACACATACTGACCTCATTGCTTCCCTGACATTGAATG
ACATAGGTGACACCCTTAATGCTTCCTACTACCACATTGTAAGCCCACTG
ACCAATACCGCTGTTGGGGCGGAGCTGACCCATAGCTTTTCAAGCAACGA
GAACACTCTGACAATCGGAACTCAACANGNNCTTGATCCTTTGACCT
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