CK939308
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK939308 vs. ExPASy Swiss-Prot
Match: PMP22_ARATH (Peroxisomal membrane protein PMP22 OS=Arabidopsis thaliana GN=PMP22 PE=1 SV=1) HSP 1 Score: 194.512 bits (493), Expect = 4.696e-49 Identity = 88/177 (49.72%), Postives = 121/177 (68.36%), Query Frame = 3 Query: 120 KEAWRKYLIQLQVHPLRTKAITAGILAGCSDAIAQKISGVKKXXXXXXXXXMFYGFAYGGPFGHFLHKLMDIIFXXXXXXXXXXXXVLLEQLTSSPWNNFLFMMYYGLVVEGRSWSLVKNKVRKDYPSVQLTAWRFWPIVGWVNYQYIPLQFRVVFHSFVASCWAIFLNLKARSVAI 650 K ++YL QLQ HPLRTKAITAG+L+G SD ++QK+SG++K + + + GP GHF H +D F V+LEQLT SP N+ LFM+YYG+V+E W+LV+ +++K YP+VQLTAW F+P+VGW+NY+Y+PL FRV+ HS VA W IFL L+ARS+ + Sbjct: 8 KTTLQRYLSQLQQHPLRTKAITAGVLSGVSDVVSQKLSGIQKIQLRRVLLKVIFAGGFLGPAGHFFHTYLDKFFKGKKDTQTVAKKVILEQLTLSPLNHLLFMIYYGVVIERTPWTLVRERIKKTYPTVQLTAWTFFPVVGWINYKYVPLHFRVILHSLVAFFWGIFLTLRARSMTL 184
BLAST of CK939308 vs. ExPASy Swiss-Prot
Match: PXMP2_RAT (Peroxisomal membrane protein 2 OS=Rattus norvegicus GN=Pxmp2 PE=1 SV=2) HSP 1 Score: 80.8777 bits (198), Expect = 7.567e-15 Identity = 51/183 (27.87%), Postives = 97/183 (53.01%), Query Frame = 3 Query: 96 QTAMSDVAKEAWRKYLIQLQVHPLRTKAITAGILAGCSDAIAQKISGVKKXXXXXXXXX-----MFYGFAYGGPFGHFLHKLMDIIFXXXXXXXXXXXXVLLEQLTSSPWNNFLFMMYYGL-VVEGRSWSLVKNKVRKDY-PSVQLTAWRFWPIVGWVNYQYIPLQFRVVFHSFVASCWAIFL 623 ++ + + K A +YL+ L+ +P+ TKA+++GIL+ + +AQ I +K + YG GP H+L+ M+ + +LL++L +P FL + ++ + ++EG++ S+ K+R + P++Q+ WR W + ++N Y+PLQFRV+F + A W +L Sbjct: 11 ESELRSLPKRALAQYLLFLKFYPVVTKAVSSGILSALGNLLAQMIEKKQKKDSRSLEVSGLLRYLVYGLFVTGPLSHYLYLFMEY-WVPPEVPWARVKRLLLDRLFFAP--TFLLLFFFVMNLLEGKNISVFVAKMRSGFWPALQMN-WRMWTPLQFININYVPLQFRVLFANMAALFWYAYL 189
BLAST of CK939308 vs. ExPASy Swiss-Prot
Match: PXMP2_MOUSE (Peroxisomal membrane protein 2 OS=Mus musculus GN=Pxmp2 PE=2 SV=2) HSP 1 Score: 80.4925 bits (197), Expect = 9.883e-15 Identity = 50/183 (27.32%), Postives = 97/183 (53.01%), Query Frame = 3 Query: 96 QTAMSDVAKEAWRKYLIQLQVHPLRTKAITAGILAGCSDAIAQKISGVKKXXXXXXXXX-----MFYGFAYGGPFGHFLHKLMDIIFXXXXXXXXXXXXVLLEQLTSSPWNNFLFMMYYGL-VVEGRSWSLVKNKVRKDY-PSVQLTAWRFWPIVGWVNYQYIPLQFRVVFHSFVASCWAIFL 623 ++ + + K A +YL+ L+++P+ TKA+++GIL+ + +AQ I ++ + YG GP H+L+ M+ +LL++L +P FL + ++ + ++EG++ S+ K+R + P++Q+ WR W + ++N Y+PLQFRV+F + A W +L Sbjct: 11 ESELGSLPKRALAQYLLLLKLYPVLTKAVSSGILSALGNLLAQTIEKKQRKDSRLLEVSGLLRYLVYGLFVTGPLSHYLYLFMEYSVPPEVPWASVKR-LLLDRLFFAP--TFLLLFFFVMNLLEGKNVSVFVAKMRSGFWPALQMN-WRMWTPLQFININYVPLQFRVLFANMAALFWYAYL 189
BLAST of CK939308 vs. ExPASy Swiss-Prot
Match: PXMP2_BOVIN (Peroxisomal membrane protein 2 OS=Bos taurus GN=PXMP2 PE=2 SV=3) HSP 1 Score: 79.7221 bits (195), Expect = 1.686e-14 Identity = 52/184 (28.26%), Postives = 89/184 (48.37%), Query Frame = 3 Query: 93 SQTAMSDVAKEAWRKYLIQLQVHPLRTKAITAGILAGCSDAIAQKISGVKKXXXXXXXXXM-------FYGFAYGGPFGHFLHKLMDIIFXXXXXXXXXXXXVLLEQLTSSPWNNFLFMMYYGLVVEGRSWSLVKNKVRKDYPSVQLTAWRFWPIVGWVNYQYIPLQFRVVFHSFVASCWAIFL 623 ++ + + + A +YL L+++P+ TKA T+GIL+ + +AQ I +K + YGF + GP GHF + LM+ + +LL++L +P LF + + EG+ + K++ + WR W V ++N YIP+QFRV+F + VA W +L Sbjct: 10 AEAGLGPLPRRALSQYLRLLRLYPVLTKAATSGILSALGNFLAQLIEKKQKKENCSQKLDVSGPLRYAIYGFFFTGPLGHFFYLLMER-WIPSEVPLAGIKRLLLDRLLFAPAFLSLFFLVMNFL-EGQDTAAFAAKMKSGFWPALRMNWRVWTPVQFININYIPVQFRVLFANLVALFWYAYL 191
BLAST of CK939308 vs. ExPASy Swiss-Prot
Match: PX24C_DICDI (PXMP2/4 family protein 3 OS=Dictyostelium discoideum GN=DDB_G0290223 PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.686e-14 Identity = 42/166 (25.30%), Postives = 85/166 (51.20%), Query Frame = 3 Query: 138 YLIQLQVHPLRTKAITAGILAGCSDAIAQKISGVKKXXXXXXXXXMFYGFAYGGPFGHFLHKLMDIIFXXXXXXXXXXXXVLLEQLTSSPWNNFLFMMYYGLVVEGRSWSLVKNKVRKDYPSVQLTAWRFWPIVGWVNYQYIPLQFRVVFHSFVASCWAIFLNLKA 635 Y+ +L+ P++TKA+T+ L+ S +AQK KK +G P H+ H ++D +F ++++QL +P+ N F +++G+ S++ +P+++ +W+ WP+ +N++++P RV+F + V CW I+L++ A Sbjct: 17 YMKKLKSKPIQTKALTSATLSFISSVVAQKFIEKKKINWNAVVKFTVWGLI-SSPLVHYWHIILDRLFKNIKDKYQSWGKLIVDQLVFAPFINIAFYSVLA-ILDGKPKSILFKLYFDLFPTLK-ASWKVWPLAQLINFRFVPSHLRVLFGNLVGFCWGIYLSILA 179
BLAST of CK939308 vs. ExPASy Swiss-Prot
Match: PX24D_DICDI (PXMP2/4 family protein 4 OS=Dictyostelium discoideum GN=DDB_G0290631 PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 6.406e-14 Identity = 54/172 (31.40%), Postives = 81/172 (47.09%), Query Frame = 3 Query: 120 KEAWRKYLIQLQVHPLRTKAITAGILAGCSDAIAQKIS----GVKKXXXXXXXXXMFYGFAYGGPFGHFLHKLMDIIFXXXXXXXXXXXXVLLEQLTSSPWNNFLFMMYYGLVVEGRSWSLVKNKVRKDYPSVQLTAWRFWPIVGWVNYQYIPLQFRVVFHSFVASCWAIFL 623 K A YL QL +P+ TKA+T+G L SD++ Q I KK +GFA GP H+ K +D F + ++Q+ SP NFLF G ++EG+S + K++KD+ + ++ WP + +VN+ YI RV F + W FL Sbjct: 9 KLAQSHYLSQLHKYPVATKAVTSGFLYLISDSLVQGIELSRDKDKKYDFKRSMRMAVFGFAVTGPLFHYWFKYLDKHFPKKSYRHAFIK-LTIDQVVCSPVFNFLFFSGMG-ILEGKSKDDIVEKLKKDWLTTYVSDCVVWPFINFVNFAYISSIHRVTFMNVCNIGWGAFL 178
BLAST of CK939308 vs. ExPASy Swiss-Prot
Match: PXMP2_HUMAN (Peroxisomal membrane protein 2 OS=Homo sapiens GN=PXMP2 PE=1 SV=3) HSP 1 Score: 75.8702 bits (185), Expect = 2.434e-13 Identity = 49/183 (26.78%), Postives = 86/183 (46.99%), Query Frame = 3 Query: 93 SQTAMSDVAKEAWRKYLIQLQVHPLRTKAITAGILAGCSDAIAQKISGVKKXXXXXXXXX------MFYGFAYGGPFGHFLHKLMDIIFXXXXXXXXXXXXVLLEQLTSSPWNNFLFMMYYGLVVEGRSWSLVKNKVRKDYPSVQLTAWRFWPIVGWVNYQYIPLQFRVVFHSFVASCWAIFL 623 ++ + + + A +YL+ L+++P+ TKA T+GIL+ + +AQ I +K YGF + GP HF + M+ + +LL++L +P LF + + EG+ S K+R + WR W + ++N Y+PL+FRV+F + A W +L Sbjct: 10 AEAGLGALPRRALAQYLLFLRLYPVLTKAATSGILSALGNFLAQMIEKKRKKENSRSLDVGGPLRYAVYGFFFTGPLSHFFYFFMEH-WIPPEVPLAGLRRLLLDRLVFAPAFLMLFFLIMNFL-EGKDASAFAAKMRGGFWPALRMNWRVWTPLQFININYVPLKFRVLFANLAALFWYAYL 190
BLAST of CK939308 vs. ExPASy Swiss-Prot
Match: MPV17_XENLA (Protein Mpv17 OS=Xenopus laevis GN=mpv17 PE=2 SV=2) HSP 1 Score: 74.3294 bits (181), Expect = 7.082e-13 Identity = 50/172 (29.07%), Postives = 78/172 (45.35%), Query Frame = 3 Query: 129 WRKYLIQLQVHPLRTKAITAGILAGCSDAIAQKI---SGVKKXXXXXXXXXMFYGFAYGGPFGHFLHKLMDIIFXXXXXXXXXXXXVLLEQLTSSPWNNFLFMMYYGLVVEGRSWSLVKNKVRKDYPSVQLTAWRFWPIVGWVNYQYIPLQFRVVFHSFVASCWAIFLNLKA 635 WR Y L HP + + +TAG L G D I+Q++ G+K M GF + GP +K++D I +LL+Q+ +P F+ + G S + K+++DY +T + WP V N+ +IPL R+ FVA W +L+ KA Sbjct: 5 WRAYQRLLGAHPWKVQIVTAGSLVGVGDVISQQLLERKGLKGHSIERTVKMMGIGFCFVGPVVGGWYKILDRIIPGSGKPVALKK-MLLDQVAFAPCFLGCFLSIAS-ALNGLSGEQIWGKLKRDYKDALITNYYIWPAVQVANFYFIPLYHRLAVVQFVAIIWNSYLSWKA 174 The following BLAST results are available for this feature:
BLAST of CK939308 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 8
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CK939308 ID=CK939308; Name=CK939308; organism=Citrus sinensis; type=EST; length=711bpback to top |