CK939308

Overview
NameCK939308
Unique NameCK939308
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length711
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1922 contig Csv1_Contig1922:113..823. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK939308 vs. ExPASy Swiss-Prot
Match: PMP22_ARATH (Peroxisomal membrane protein PMP22 OS=Arabidopsis thaliana GN=PMP22 PE=1 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.696e-49
Identity = 88/177 (49.72%), Postives = 121/177 (68.36%), Query Frame = 3
Query:  120 KEAWRKYLIQLQVHPLRTKAITAGILAGCSDAIAQKISGVKKXXXXXXXXXMFYGFAYGGPFGHFLHKLMDIIFXXXXXXXXXXXXVLLEQLTSSPWNNFLFMMYYGLVVEGRSWSLVKNKVRKDYPSVQLTAWRFWPIVGWVNYQYIPLQFRVVFHSFVASCWAIFLNLKARSVAI 650
            K   ++YL QLQ HPLRTKAITAG+L+G SD ++QK+SG++K         + +   + GP GHF H  +D  F            V+LEQLT SP N+ LFM+YYG+V+E   W+LV+ +++K YP+VQLTAW F+P+VGW+NY+Y+PL FRV+ HS VA  W IFL L+ARS+ +
Sbjct:    8 KTTLQRYLSQLQQHPLRTKAITAGVLSGVSDVVSQKLSGIQKIQLRRVLLKVIFAGGFLGPAGHFFHTYLDKFFKGKKDTQTVAKKVILEQLTLSPLNHLLFMIYYGVVIERTPWTLVRERIKKTYPTVQLTAWTFFPVVGWINYKYVPLHFRVILHSLVAFFWGIFLTLRARSMTL 184          
BLAST of CK939308 vs. ExPASy Swiss-Prot
Match: PXMP2_RAT (Peroxisomal membrane protein 2 OS=Rattus norvegicus GN=Pxmp2 PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 7.567e-15
Identity = 51/183 (27.87%), Postives = 97/183 (53.01%), Query Frame = 3
Query:   96 QTAMSDVAKEAWRKYLIQLQVHPLRTKAITAGILAGCSDAIAQKISGVKKXXXXXXXXX-----MFYGFAYGGPFGHFLHKLMDIIFXXXXXXXXXXXXVLLEQLTSSPWNNFLFMMYYGL-VVEGRSWSLVKNKVRKDY-PSVQLTAWRFWPIVGWVNYQYIPLQFRVVFHSFVASCWAIFL 623
            ++ +  + K A  +YL+ L+ +P+ TKA+++GIL+   + +AQ I   +K              + YG    GP  H+L+  M+  +            +LL++L  +P   FL + ++ + ++EG++ S+   K+R  + P++Q+  WR W  + ++N  Y+PLQFRV+F +  A  W  +L
Sbjct:   11 ESELRSLPKRALAQYLLFLKFYPVVTKAVSSGILSALGNLLAQMIEKKQKKDSRSLEVSGLLRYLVYGLFVTGPLSHYLYLFMEY-WVPPEVPWARVKRLLLDRLFFAP--TFLLLFFFVMNLLEGKNISVFVAKMRSGFWPALQMN-WRMWTPLQFININYVPLQFRVLFANMAALFWYAYL 189          
BLAST of CK939308 vs. ExPASy Swiss-Prot
Match: PXMP2_MOUSE (Peroxisomal membrane protein 2 OS=Mus musculus GN=Pxmp2 PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 9.883e-15
Identity = 50/183 (27.32%), Postives = 97/183 (53.01%), Query Frame = 3
Query:   96 QTAMSDVAKEAWRKYLIQLQVHPLRTKAITAGILAGCSDAIAQKISGVKKXXXXXXXXX-----MFYGFAYGGPFGHFLHKLMDIIFXXXXXXXXXXXXVLLEQLTSSPWNNFLFMMYYGL-VVEGRSWSLVKNKVRKDY-PSVQLTAWRFWPIVGWVNYQYIPLQFRVVFHSFVASCWAIFL 623
            ++ +  + K A  +YL+ L+++P+ TKA+++GIL+   + +AQ I   ++              + YG    GP  H+L+  M+               +LL++L  +P   FL + ++ + ++EG++ S+   K+R  + P++Q+  WR W  + ++N  Y+PLQFRV+F +  A  W  +L
Sbjct:   11 ESELGSLPKRALAQYLLLLKLYPVLTKAVSSGILSALGNLLAQTIEKKQRKDSRLLEVSGLLRYLVYGLFVTGPLSHYLYLFMEYSVPPEVPWASVKR-LLLDRLFFAP--TFLLLFFFVMNLLEGKNVSVFVAKMRSGFWPALQMN-WRMWTPLQFININYVPLQFRVLFANMAALFWYAYL 189          
BLAST of CK939308 vs. ExPASy Swiss-Prot
Match: PXMP2_BOVIN (Peroxisomal membrane protein 2 OS=Bos taurus GN=PXMP2 PE=2 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 1.686e-14
Identity = 52/184 (28.26%), Postives = 89/184 (48.37%), Query Frame = 3
Query:   93 SQTAMSDVAKEAWRKYLIQLQVHPLRTKAITAGILAGCSDAIAQKISGVKKXXXXXXXXXM-------FYGFAYGGPFGHFLHKLMDIIFXXXXXXXXXXXXVLLEQLTSSPWNNFLFMMYYGLVVEGRSWSLVKNKVRKDYPSVQLTAWRFWPIVGWVNYQYIPLQFRVVFHSFVASCWAIFL 623
            ++  +  + + A  +YL  L+++P+ TKA T+GIL+   + +AQ I   +K         +        YGF + GP GHF + LM+  +            +LL++L  +P    LF +    + EG+  +    K++  +       WR W  V ++N  YIP+QFRV+F + VA  W  +L
Sbjct:   10 AEAGLGPLPRRALSQYLRLLRLYPVLTKAATSGILSALGNFLAQLIEKKQKKENCSQKLDVSGPLRYAIYGFFFTGPLGHFFYLLMER-WIPSEVPLAGIKRLLLDRLLFAPAFLSLFFLVMNFL-EGQDTAAFAAKMKSGFWPALRMNWRVWTPVQFININYIPVQFRVLFANLVALFWYAYL 191          
BLAST of CK939308 vs. ExPASy Swiss-Prot
Match: PX24C_DICDI (PXMP2/4 family protein 3 OS=Dictyostelium discoideum GN=DDB_G0290223 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.686e-14
Identity = 42/166 (25.30%), Postives = 85/166 (51.20%), Query Frame = 3
Query:  138 YLIQLQVHPLRTKAITAGILAGCSDAIAQKISGVKKXXXXXXXXXMFYGFAYGGPFGHFLHKLMDIIFXXXXXXXXXXXXVLLEQLTSSPWNNFLFMMYYGLVVEGRSWSLVKNKVRKDYPSVQLTAWRFWPIVGWVNYQYIPLQFRVVFHSFVASCWAIFLNLKA 635
            Y+ +L+  P++TKA+T+  L+  S  +AQK    KK           +G     P  H+ H ++D +F            ++++QL  +P+ N  F      +++G+  S++       +P+++  +W+ WP+   +N++++P   RV+F + V  CW I+L++ A
Sbjct:   17 YMKKLKSKPIQTKALTSATLSFISSVVAQKFIEKKKINWNAVVKFTVWGLI-SSPLVHYWHIILDRLFKNIKDKYQSWGKLIVDQLVFAPFINIAFYSVLA-ILDGKPKSILFKLYFDLFPTLK-ASWKVWPLAQLINFRFVPSHLRVLFGNLVGFCWGIYLSILA 179          
BLAST of CK939308 vs. ExPASy Swiss-Prot
Match: PX24D_DICDI (PXMP2/4 family protein 4 OS=Dictyostelium discoideum GN=DDB_G0290631 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.406e-14
Identity = 54/172 (31.40%), Postives = 81/172 (47.09%), Query Frame = 3
Query:  120 KEAWRKYLIQLQVHPLRTKAITAGILAGCSDAIAQKIS----GVKKXXXXXXXXXMFYGFAYGGPFGHFLHKLMDIIFXXXXXXXXXXXXVLLEQLTSSPWNNFLFMMYYGLVVEGRSWSLVKNKVRKDYPSVQLTAWRFWPIVGWVNYQYIPLQFRVVFHSFVASCWAIFL 623
            K A   YL QL  +P+ TKA+T+G L   SD++ Q I       KK           +GFA  GP  H+  K +D  F            + ++Q+  SP  NFLF    G ++EG+S   +  K++KD+ +  ++    WP + +VN+ YI    RV F +     W  FL
Sbjct:    9 KLAQSHYLSQLHKYPVATKAVTSGFLYLISDSLVQGIELSRDKDKKYDFKRSMRMAVFGFAVTGPLFHYWFKYLDKHFPKKSYRHAFIK-LTIDQVVCSPVFNFLFFSGMG-ILEGKSKDDIVEKLKKDWLTTYVSDCVVWPFINFVNFAYISSIHRVTFMNVCNIGWGAFL 178          
BLAST of CK939308 vs. ExPASy Swiss-Prot
Match: PXMP2_HUMAN (Peroxisomal membrane protein 2 OS=Homo sapiens GN=PXMP2 PE=1 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 2.434e-13
Identity = 49/183 (26.78%), Postives = 86/183 (46.99%), Query Frame = 3
Query:   93 SQTAMSDVAKEAWRKYLIQLQVHPLRTKAITAGILAGCSDAIAQKISGVKKXXXXXXXXX------MFYGFAYGGPFGHFLHKLMDIIFXXXXXXXXXXXXVLLEQLTSSPWNNFLFMMYYGLVVEGRSWSLVKNKVRKDYPSVQLTAWRFWPIVGWVNYQYIPLQFRVVFHSFVASCWAIFL 623
            ++  +  + + A  +YL+ L+++P+ TKA T+GIL+   + +AQ I   +K                 YGF + GP  HF +  M+  +            +LL++L  +P    LF +    + EG+  S    K+R  +       WR W  + ++N  Y+PL+FRV+F +  A  W  +L
Sbjct:   10 AEAGLGALPRRALAQYLLFLRLYPVLTKAATSGILSALGNFLAQMIEKKRKKENSRSLDVGGPLRYAVYGFFFTGPLSHFFYFFMEH-WIPPEVPLAGLRRLLLDRLVFAPAFLMLFFLIMNFL-EGKDASAFAAKMRGGFWPALRMNWRVWTPLQFININYVPLKFRVLFANLAALFWYAYL 190          
BLAST of CK939308 vs. ExPASy Swiss-Prot
Match: MPV17_XENLA (Protein Mpv17 OS=Xenopus laevis GN=mpv17 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 7.082e-13
Identity = 50/172 (29.07%), Postives = 78/172 (45.35%), Query Frame = 3
Query:  129 WRKYLIQLQVHPLRTKAITAGILAGCSDAIAQKI---SGVKKXXXXXXXXXMFYGFAYGGPFGHFLHKLMDIIFXXXXXXXXXXXXVLLEQLTSSPWNNFLFMMYYGLVVEGRSWSLVKNKVRKDYPSVQLTAWRFWPIVGWVNYQYIPLQFRVVFHSFVASCWAIFLNLKA 635
            WR Y   L  HP + + +TAG L G  D I+Q++    G+K          M  GF + GP     +K++D I             +LL+Q+  +P     F+      + G S   +  K+++DY    +T +  WP V   N+ +IPL  R+    FVA  W  +L+ KA
Sbjct:    5 WRAYQRLLGAHPWKVQIVTAGSLVGVGDVISQQLLERKGLKGHSIERTVKMMGIGFCFVGPVVGGWYKILDRIIPGSGKPVALKK-MLLDQVAFAPCFLGCFLSIAS-ALNGLSGEQIWGKLKRDYKDALITNYYIWPAVQVANFYFIPLYHRLAVVQFVAIIWNSYLSWKA 174          
The following BLAST results are available for this feature:
BLAST of CK939308 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
PMP22_ARATH4.696e-4949.72Peroxisomal membrane protein PMP22 OS=Arabidopsis ... [more]
PXMP2_RAT7.567e-1527.87Peroxisomal membrane protein 2 OS=Rattus norvegicu... [more]
PXMP2_MOUSE9.883e-1527.32Peroxisomal membrane protein 2 OS=Mus musculus GN=... [more]
PXMP2_BOVIN1.686e-1428.26Peroxisomal membrane protein 2 OS=Bos taurus GN=PX... [more]
PX24C_DICDI1.686e-1425.30PXMP2/4 family protein 3 OS=Dictyostelium discoide... [more]
PX24D_DICDI6.406e-1431.40PXMP2/4 family protein 4 OS=Dictyostelium discoide... [more]
PXMP2_HUMAN2.434e-1326.78Peroxisomal membrane protein 2 OS=Homo sapiens GN=... [more]
MPV17_XENLA7.082e-1329.07Protein Mpv17 OS=Xenopus laevis GN=mpv17 PE=2 SV=2[more]
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Properties
Property NameValue
Genbank descriptionCGF1004752_E01 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IVF_E01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939308 ID=CK939308; Name=CK939308; organism=Citrus sinensis; type=EST; length=711bp
TGTCTGCGTAAGAATTAATACTGAGTTTTTGAAGAGCAGTTGTTGAATCG
TCATTCGTCCATCACCAGGCTCTTCGCAGGCTTACGGCCGCCAGCCAGAC
AGCCATGTCTGATGTAGCCAAAGAAGCTTGGAGAAAATATCTCATACAAC
TCCAAGTTCACCCTTTGAGAACCAAGGCAATCACCGCTGGTATATTAGCT
GGGTGTAGTGATGCCATTGCCCAGAAGATTTCTGGGGTCAAAAAGCTTCA
ACTTACAAGATTGTTGCTTCTTATGTTTTATGGTTTTGCATATGGAGGAC
CATTTGGGCATTTTCTTCACAAATTGATGGATATTATTTTCAAGGGAAAG
AAGGACAAGAAAACTGTTGCGAAGAAGGTGTTGTTGGAGCAACTAACTTC
TTCACCTTGGAACAATTTCCTTTTCATGATGTACTATGGCTTGGTGGTTG
AAGGAAGATCATGGAGTTTAGTCAAGAATAAAGTTCGGAAGGACTATCCT
TCTGTTCAGTTGACTGCATGGAGGTTTTGGCCTATAGTTGGCTGGGTGAA
CTACCAGTACATCCCTCTGCAATTTCGAGTTGTGTTTCATAGCTTTGTTG
CCTCATGCTGGGCTATCTTCCTCAATTTGAAAGCAAGATCCGTTGCAATC
AAGAAGGACTAGACGTAGGAACCTTTTTAATATCTGTCCAATTTAATTTC
TTAGATTTTTA
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