CK939305

Overview
NameCK939305
Unique NameCK939305
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length811
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK939305_ssr104 microsatellite CK939305_ssr104:104..113. BLAST: Citrus ESTs to Prunus persica proteins V1
CK939305_ssr250 microsatellite CK939305_ssr250:250..261. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of CK939305 vs. ExPASy Swiss-Prot
Match: PAP6_ARATH (Probable plastid-lipid-associated protein 6, chloroplastic OS=Arabidopsis thaliana GN=PAP6 PE=1 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 2.801e-67
Identity = 119/159 (74.84%), Postives = 140/159 (88.05%), Query Frame = 1 
Query:  328 VSGLNRGLAANTDDLQKADAAAKELEAVGGPVDLSVGLDRLQGKWRLLYSSAFSSRTLGGNRPGPPTGRLLPITLGQVFQRIDILSKDFDNIAELELGVPWPLPPVEVTATLAHKFELIGSSNIKIIFEKTTVKTTGNLSQLPPLELPRFPDALRPPSD 804
            VSGLNRGL A+ DDL++A+ AAKELE  GGPVDL+  LD+LQGKWRLLYSSAFSSR+LGG+RPG PTGRL+P+TLGQVFQRID+ SKDFDNIAE+ELG PWP PP+E TATLAHKFEL+G+  IKI FEKTTVKT+GNLSQ+PP ++PR PD+ RP S+
Sbjct:   95 VSGLNRGLVASVDDLERAEVAAKELETAGGPVDLTDDLDKLQGKWRLLYSSAFSSRSLGGSRPGLPTGRLIPVTLGQVFQRIDVFSKDFDNIAEVELGAPWPFPPLEATATLAHKFELLGTCKIKITFEKTTVKTSGNLSQIPPFDIPRLPDSFRPSSN 253
The following BLAST results are available for this feature:
BLAST of CK939305 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PAP6_ARATH2.801e-6774.84Probable plastid-lipid-associated protein 6, chlor... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004752_D07 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IVF_D07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939305 ID=CK939305; Name=CK939305; organism=Citrus sinensis; type=EST; length=811bp
GGGGAAACACACGCCGACATTGAAACTCCCCCCACCCACATCATGGCTTC
TCTGACTCTAACCCCTCTTTTTCATTCACCAACATTTCTTTCCAGCAATA
CTAACACACACACAGTCACAAAAAAACTGTCTTTTCCATCTCCAACGCGA
CGTCGTCTGCTTGTTAATGGTAAAGAGTATCGAAGTAGAAGAAGAAGCCT
TGTTTTGAGGAGGTCAGCCGTTGATGACGTTCCTGTTCTTGACCCACCAC
CTCCTCCTCCTCCCGATTCTTCAGAAAGCGACAAAACTGAGCTCATTGCT
TCTTTGAAGCTCAAGTTGCTTAGTGCTGTTTCTGGGCTGAACAGAGGTCT
TGCTGCAAACACAGATGATCTGCAGAAGGCAGACGCTGCTGCAAAAGAGC
TTGAGGCTGTTGGAGGACCAGTAGACCTCTCGGTTGGTCTCGATAGACTA
CAAGGGAAATGGAGACTACTGTACAGCAGTGCATTCTCATCTCGCACTCT
AGGTGGAAATCGGCCTGGACCTCCCACTGGAAGGCTACTCCCCATAACTC
TTGGCCAGGTCTTTCAACGGATTGACATCTTAAGCAAAGATTTTGATAAC
ATAGCAGAACTTGAATTGGGTGTTCCATGGCCCCTGCCACCAGTTGAAGT
GACTGCCACATTAGCCCATAAATTTGAACTCATAGGATCATCAAATATTA
AAATAATATTTGAGAAGACAACTGTAAAGACAACAGGGAACTTATCACAG
CTTCCACCCCTTGAGTTACCTCGTTTTCCAGATGCATTAAGGCCTCCATC
TGACACAAGAA
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