CK939302

Overview
NameCK939302
Unique NameCK939302
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length415
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12790 contig Csv1_Contig12790:241..657. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK939302 vs. ExPASy Swiss-Prot
Match: SAP18_ARATH (Histone deacetylase complex subunit SAP18 OS=Arabidopsis thaliana GN=At2g45640 PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.305e-36
Identity = 74/96 (77.08%), Postives = 84/96 (87.50%), Query Frame = 1
Query:    1 EDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDVAI 288
            ED+AVRGKEPKDEVQIYTWKDA+LRELTDLVKEV+ AARRR+ARLSFAFVYP+  G + VREVG+T +Y  R+Q DD K L+EL FEIGDYLDVAI
Sbjct:   56 EDYAVRGKEPKDEVQIYTWKDASLRELTDLVKEVSVAARRRNARLSFAFVYPNNKGGYNVREVGETMAYPNRKQPDDSKTLSELPFEIGDYLDVAI 151          
BLAST of CK939302 vs. ExPASy Swiss-Prot
Match: SAP18_PONAB (Histone deacetylase complex subunit SAP18 OS=Pongo abelii GN=SAP18 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.731e-19
Identity = 48/92 (52.17%), Postives = 60/92 (65.22%), Query Frame = 1
Query:   16 RGKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPD-KNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDVAI 288
            RG  P  E+QIYTW DATL+ELT LVKEV P AR++    +FA V+ D K   + V+E+G T S  GR+  DD   L    F+IGDYLD+AI
Sbjct:   48 RGNVPSSELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFTDVKRPGYRVKEIGSTMS--GRKGTDDSMTLQSQKFQIGDYLDIAI 137          
BLAST of CK939302 vs. ExPASy Swiss-Prot
Match: SAP18_HUMAN (Histone deacetylase complex subunit SAP18 OS=Homo sapiens GN=SAP18 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.731e-19
Identity = 48/92 (52.17%), Postives = 60/92 (65.22%), Query Frame = 1
Query:   16 RGKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPD-KNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDVAI 288
            RG  P  E+QIYTW DATL+ELT LVKEV P AR++    +FA V+ D K   + V+E+G T S  GR+  DD   L    F+IGDYLD+AI
Sbjct:   48 RGNVPSSELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFTDVKRPGYRVKEIGSTMS--GRKGTDDSMTLQSQKFQIGDYLDIAI 137          
BLAST of CK939302 vs. ExPASy Swiss-Prot
Match: SAP18_BOVIN (Histone deacetylase complex subunit SAP18 OS=Bos taurus GN=SAP18 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.731e-19
Identity = 48/92 (52.17%), Postives = 60/92 (65.22%), Query Frame = 1
Query:   16 RGKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPD-KNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDVAI 288
            RG  P  E+QIYTW DATL+ELT LVKEV P AR++    +FA V+ D K   + V+E+G T S  GR+  DD   L    F+IGDYLD+AI
Sbjct:   48 RGNVPSSELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFTDLKRPGYRVKEIGSTMS--GRKGTDDSMTLQSQKFQIGDYLDIAI 137          
BLAST of CK939302 vs. ExPASy Swiss-Prot
Match: SAP18_MOUSE (Histone deacetylase complex subunit SAP18 OS=Mus musculus GN=Sap18 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.271e-18
Identity = 48/92 (52.17%), Postives = 60/92 (65.22%), Query Frame = 1
Query:   16 RGKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPD-KNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDVAI 288
            RG  P  E+QIYTW DATL+ELT LVKEV P AR++    +FA V+ D K   + V+E+G T S  GR+  DD   L    F+IGDYLD+AI
Sbjct:   48 RGNVPSSELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFMDLKRPGYRVKEIGSTMS--GRKGTDDSMTLQSQKFQIGDYLDIAI 137          
BLAST of CK939302 vs. ExPASy Swiss-Prot
Match: SAP18_DROME (Histone deacetylase complex subunit SAP18 OS=Drosophila melanogaster GN=Bin1 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.405e-17
Identity = 43/91 (47.25%), Postives = 63/91 (69.23%), Query Frame = 1
Query:   19 GKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPD-KNGRFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDVAI 288
            G  P +E+QIYTW+DATL ELT LV++V P  R++     FA VYP+ ++  F +RE+G T +  G++ +DD K LA+  F IGD+LD++I
Sbjct:   46 GNVPTNELQIYTWQDATLHELTSLVRDVNPDTRKKGTYFDFAVVYPNFRSNHFQMREIGVTCT--GQKGIDDNKTLAQAKFSIGDFLDISI 134          
BLAST of CK939302 vs. ExPASy Swiss-Prot
Match: SAP18_CAEEL (Probable histone deacetylase complex subunit SAP18 OS=Caenorhabditis elegans GN=C16C10.4 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.108e-17
Identity = 43/91 (47.25%), Postives = 60/91 (65.93%), Query Frame = 1
Query:   19 GKEPKDEVQIYTWKDATLRELTDLVKEVAPAARRRDARLSFAFVYPDKNG-RFMVREVGKTFSYEGRRQLDDGKMLAELGFEIGDYLDVAI 288
            G  P  E+Q++TW D +LRELT L+KEV P ARR+     FA V  D+   R+++R+VG T +  G R +DD K L +  FE+GD++DVAI
Sbjct:   49 GSVPPSELQMHTWMDCSLRELTSLIKEVNPDARRKGTTFDFAIVQADRGSPRYILRDVGNTTN--GERGIDDNKTLQQCKFEVGDFVDVAI 137          
The following BLAST results are available for this feature:
BLAST of CK939302 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
SAP18_ARATH2.305e-3677.08Histone deacetylase complex subunit SAP18 OS=Arabi... [more]
SAP18_PONAB9.731e-1952.17Histone deacetylase complex subunit SAP18 OS=Pongo... [more]
SAP18_HUMAN9.731e-1952.17Histone deacetylase complex subunit SAP18 OS=Homo ... [more]
SAP18_BOVIN9.731e-1952.17Histone deacetylase complex subunit SAP18 OS=Bos t... [more]
SAP18_MOUSE1.271e-1852.17Histone deacetylase complex subunit SAP18 OS=Mus m... [more]
SAP18_DROME1.405e-1747.25Histone deacetylase complex subunit SAP18 OS=Droso... [more]
SAP18_CAEEL9.108e-1747.25Probable histone deacetylase complex subunit SAP18... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004752_D02 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IVF_D02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939302 ID=CK939302; Name=CK939302; organism=Citrus sinensis; type=EST; length=415bp
GAGGATTTTGCAGTCAGAGGCAAGGAACCCAAGGATGAGGTTCAAATTTA
TACTTGGAAGGATGCTACTCTTCGTGAACTAACTGATCTGGTTAAAGAAG
TAGCACCGGCTGCAAGAAGAAGGGATGCAAGGCTTTCTTTTGCTTTTGTT
TATCCCGATAAGAATGGTCGTTTTATGGTGAGAGAGGTGGGGAAGACCTT
CTCTTATGAAGGTAGGAGGCAGTTAGATGATGGCAAAATGTTGGCTGAAC
TTGGCTTTGAGATTGGAGATTACTTGGATGTGGCTATCCTATAAAGTTTA
ACTGTGTAATTTGTTTAGATCGGTTATGATACGACTAGATTTGAGACTTG
GGAAAGGGCCTGTTATGTAACTTAGTCATATTTTAGCATGATTTCACTCT
TTGTTTCAGCCCTGA
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