CX675652

Overview
NameCX675652
Unique NameCX675652
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length609
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675652 vs. ExPASy Swiss-Prot
Match: BIOB_ARATH (Biotin synthase OS=Arabidopsis thaliana GN=BIO2 PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.125e-46
Identity = 98/137 (71.53%), Postives = 104/137 (75.91%), Query Frame = -2
Query:  198 EPEEDRVGXXXXXXXXXXXPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATAXIVMPKAMVRLSAARIRSSMPE*ALCFLAGANSIFTGEKLLTTPNNNFVADQLMFKVLGLTPKAPIFHEDEANVSKVESYQEA 608
            E EEDR+G           PESVPINALLAVKGTPL+DQKPVEIWEMIRMI TA IVMPKAMVRLSA R+R SM E ALCFLAGANSIFTGEKLLTTPNN+F ADQLMFK LGL PK P F ED++     E    A
Sbjct:  240 EAEEDRIGLLHTLATLPSHPESVPINALLAVKGTPLEDQKPVEIWEMIRMIGTARIVMPKAMVRLSAGRVRFSMSEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKTLGLIPKPPSFSEDDSESENCEKVASA 376          
BLAST of CX675652 vs. ExPASy Swiss-Prot
Match: BIOB_CYTH3 (Biotin synthase OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=bioB PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.337e-32
Identity = 77/138 (55.80%), Postives = 92/138 (66.67%), Query Frame = -2
Query:  195 EPEEDRVGXXXXXXXXXXXPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATAXIVMPKAMVRLSAARIRSSMPE*ALCFLAGANSIFTGEKLLTTPNNNFVADQLMFKVLGLTPKAPIFHEDEANVSKVESYQEAI 608
            E   DRVG           PESVP+NAL+ V+GTPL+DQ  V +WEM+RMIATA I+MPKAMVRLSA R+R +  E ALCFLAGANSIF G+KLLTTPN    AD+ MF+VL L P+   F   +A   K E    A+
Sbjct:  199 ESHGDRVGMLHTLANMVEHPESVPVNALVPVEGTPLEDQPRVSVWEMVRMIATARIIMPKAMVRLSAGRVRMNTEEQALCFLAGANSIFAGDKLLTTPNPEVNADKEMFQVLNLKPRQS-FKNGDAPKIKFEQIPSAL 335          
BLAST of CX675652 vs. ExPASy Swiss-Prot
Match: BIOB_FLAPJ (Biotin synthase OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=bioB PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 4.757e-30
Identity = 71/137 (51.82%), Postives = 89/137 (64.96%), Query Frame = -2
Query:  201 DRVGXXXXXXXXXXXPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATAXIVMPKAMVRLSAARIRSSMPE*ALCFLAGANSIFTGEKLLTTPNNNFVADQLMFKVLGLTPKAPIFHED-----EANVSKVESYQE 596
            DR G           PESVPINAL+AV+GTP++++KPVEIWEMIRM+AT  I+MP+  VRLSA R+  +    A+CF AGANSIF G+KLLTTPN +   D  MF++LGL P+ P          EA  S+ ES  E
Sbjct:  203 DRAGMLVALSTLSPQPESVPINALVAVEGTPMEEEKPVEIWEMIRMVATTRIIMPETQVRLSAGRMNMTREGQAMCFFAGANSIFAGDKLLTTPNPDVNEDMKMFEMLGLNPQKPFTKVSQPTTVEAKDSRYESLGE 339          
BLAST of CX675652 vs. ExPASy Swiss-Prot
Match: BIOB_GRAFK (Biotin synthase OS=Gramella forsetii (strain KT0803) GN=bioB PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.384e-29
Identity = 67/117 (57.26%), Postives = 81/117 (69.23%), Query Frame = -2
Query:  258 EPEEDRVGXXXXXXXXXXXPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATAXIVMPKAMVRLSAARIRSSMPE*ALCFLAGANSIFTGEKLLTTPNNNFVADQLMFKVLGLTPK 608
            E E DR G           PESVPINAL+ V+GTP+++Q+PV IWEMIRM+AT  IVMP+  VRLSA R + S    A+CF AGANSIF G+KLLTTPN +   D  MFK+LGL P+
Sbjct:  198 ESEADRAGMLVALSTLNPQPESVPINALVPVEGTPMEEQEPVPIWEMIRMVATTRIVMPETQVRLSAGRTQMSREGQAMCFFAGANSIFAGDKLLTTPNPDVSEDMEMFKMLGLNPQ 314          
BLAST of CX675652 vs. ExPASy Swiss-Prot
Match: BIOB_FLAJ1 (Biotin synthase OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=bioB PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.384e-29
Identity = 67/119 (56.30%), Postives = 81/119 (68.07%), Query Frame = -2
Query:  252 EPEEDRVGXXXXXXXXXXXPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATAXIVMPKAMVRLSAARIRSSMPE*ALCFLAGANSIFTGEKLLTTPNNNFVADQLMFKVLGLTPKAP 608
            E  EDR G           PESVPINAL+AV+GTP++++KPVEIWEMIRM+AT  IVMP+  VRLSA R   S    A+CF AGANSIF G+KLLTTPN +   D  MF+ LG+  + P
Sbjct:  200 ESIEDRAGMLVALSTLNPQPESVPINALVAVEGTPMEEEKPVEIWEMIRMVATTRIVMPETQVRLSAGRTNMSREGQAMCFFAGANSIFAGDKLLTTPNPDVNEDMKMFETLGMVAQKP 318          
BLAST of CX675652 vs. ExPASy Swiss-Prot
Match: BIOB_CHLPN (Biotin synthase OS=Chlamydia pneumoniae GN=bioB PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.191e-26
Identity = 63/127 (49.61%), Postives = 81/127 (63.78%), Query Frame = -2
Query:  228 EPEEDRVGXXXXXXXXXXXPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATAXIVMPKAMVRLSAARIRSSMPE*ALCFLAGANSIFTGEKLLTTPNNNFVADQLMFKVLGLTPKAPIFHEDEAN 608
            E EEDR+            PESVP+N L  + GTPLQDQ P+  WE++R IATA +V P++MVRL+A R   ++ +  LCFLAGANSIF G+KLLT  NN+   D  M K+LGL P+ P F  +  N
Sbjct:  199 ESEEDRIKLLHVLATRDHIPESVPVNLLWPIDGTPLQDQPPISFWEVLRTIATARVVFPRSMVRLAAGRAFLTVEQQTLCFLAGANSIFYGDKLLTVENNDIDEDAEMIKLLGLIPR-PSFGIERGN 324          
BLAST of CX675652 vs. ExPASy Swiss-Prot
Match: BIOB_GLOVI (Biotin synthase OS=Gloeobacter violaceus GN=bioB PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.900e-24
Identity = 57/97 (58.76%), Postives = 69/97 (71.13%), Query Frame = -2
Query:  258 ESVPINALLAVKGTPLQDQKPVEIWEMIRMIATAXIVMPKAMVRLSAARIRSSMPE*ALCFLAGANSIFTGEKLLTTPNNNFVADQLMFKVLGLTPK 548
            ES+PIN L+ V GTPL D  PVE  +++RM+AT  I+ P AMVRLSA R++ S    ALCFLAGANSIFTG KLLTTPN     DQ + + LG+ PK
Sbjct:  219 ESIPINCLVPVAGTPLADSSPVEPLDLVRMVATTRILFPDAMVRLSAGRLQMSEELQALCFLAGANSIFTGPKLLTTPNPEHSHDQKLLEKLGMEPK 315          
BLAST of CX675652 vs. ExPASy Swiss-Prot
Match: BIOB_CHLFF (Biotin synthase OS=Chlamydophila felis (strain Fe/C-56) GN=bioB PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.094e-24
Identity = 59/125 (47.20%), Postives = 76/125 (60.80%), Query Frame = -2
Query:  234 EPEEDRVGXXXXXXXXXXXPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATAXIVMPKAMVRLSAARIRSSMPE*ALCFLAGANSIFTGEKLLTTPNNNFVADQLMFKVLGLTPKAPIFHEDE 608
            E  EDR+G           PESVP+N L  ++GTPLQDQ+    WE++R IATA IV P +MVRL+A R   S+ +  LCF+AGANSIF GEKLLT  NN+   D  M  +LG+  +     + E
Sbjct:  199 ETTEDRIGLLHTLACRERAPESVPVNVLWPIEGTPLQDQQTPSFWEILRTIATARIVFPLSMVRLAAGRAFLSVEQQTLCFIAGANSIFYGEKLLTVDNNDMDEDTAMLNLLGMRHRPAFSRKQE 323          
BLAST of CX675652 vs. ExPASy Swiss-Prot
Match: BIOB_CHLAB (Biotin synthase OS=Chlamydophila abortus GN=bioB PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.094e-24
Identity = 59/114 (51.75%), Postives = 73/114 (64.04%), Query Frame = -2
Query:  267 EPEEDRVGXXXXXXXXXXXPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATAXIVMPKAMVRLSAARIRSSMPE*ALCFLAGANSIFTGEKLLTTPNNNFVADQLMFKVLGL 608
            E  EDRV            PESVP+N L  +KGTPL DQ  +  WE++R IATA IV P++MVRL+A R   S+ +  LCF+AGANSIF GEKLLT  NN+  AD  M  +LG+
Sbjct:  199 ETVEDRVELLHNLARRERMPESVPVNVLWPIKGTPLYDQASISFWEILRTIATARIVFPQSMVRLAAGRAFLSVEQQTLCFIAGANSIFYGEKLLTVDNNDMDADTAMLNLLGM 312          
BLAST of CX675652 vs. ExPASy Swiss-Prot
Match: BIOB_MARAV (Biotin synthase OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=bioB PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.528e-23
Identity = 64/141 (45.39%), Postives = 86/141 (60.99%), Query Frame = -2
Query:  186 EPEEDRVGXXXXXXXXXXXPESVPINALLAVKGTPLQDQKPVEIWEMIRMIATAXIVMPKAMVRLSAARIRSSMPE*ALCFLAGANSIFTGEKLLTTPNNNFVADQLMFKVLGLTPKAPIFHEDEANVSKVESYQEAISSS 608
            E E+DRVG           PESVP+N L+ VKGTPL+D + ++ ++ IR+IA A I+MP + VRLSA R + +    ALCF+AGANSIF GEKLLTT N    AD  +F+ LG+ P      E     +  E  +EAI+ +
Sbjct:  200 EDEDDRVGLLVQLANLPQHPESVPVNMLVKVKGTPLEDVEDLDPFDFIRIIAVARIMMPASHVRLSAGREQMNEQMQALCFMAGANSIFYGEKLLTTSNPEADADMQLFRKLGIRP------EQREQCATEEQEEEAIAEA 334          
The following BLAST results are available for this feature:
BLAST of CX675652 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 367
Match NameE-valueIdentityDescription
BIOB_ARATH2.125e-4671.53Biotin synthase OS=Arabidopsis thaliana GN=BIO2 PE... [more]
BIOB_CYTH31.337e-3255.80Biotin synthase OS=Cytophaga hutchinsonii (strain ... [more]
BIOB_FLAPJ4.757e-3051.82Biotin synthase OS=Flavobacterium psychrophilum (s... [more]
BIOB_GRAFK1.384e-2957.26Biotin synthase OS=Gramella forsetii (strain KT080... [more]
BIOB_FLAJ11.384e-2956.30Biotin synthase OS=Flavobacterium johnsoniae (stra... [more]
BIOB_CHLPN3.191e-2649.61Biotin synthase OS=Chlamydia pneumoniae GN=bioB PE... [more]
BIOB_GLOVI3.900e-2458.76Biotin synthase OS=Gloeobacter violaceus GN=bioB P... [more]
BIOB_CHLFF5.094e-2447.20Biotin synthase OS=Chlamydophila felis (strain Fe/... [more]
BIOB_CHLAB5.094e-2451.75Biotin synthase OS=Chlamydophila abortus GN=bioB P... [more]
BIOB_MARAV2.528e-2345.39Biotin synthase OS=Marinobacter aquaeolei (strain ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_63G08_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-63G08-M15-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675652 ID=CX675652; Name=CX675652; organism=Citrus sinensis; type=EST; length=609bp
AATAATTATTATTAATTAGTCTTGTACATGCAATCAATGTTGAAACTGAA
CAATGTACCATTGAACTCCAACAATCATAACAAATGCCAATGCATTAGCA
TGGAGTCCGAATGTAATAAACAGGGCAATAACACAAATAATACCTTGGAA
GTAGGCACCACCGTGCAAATTGTAAAGTCTCAACCTGAAGAGGAAATAGC
TTCCTGATAACTCTCTACTTTGGAAACATTTGCTTCGTCTTCATGAAAAA
TGGGAGCTTTAGGAGTGAGTCCAAGAACCTTGAACATGAGTTGATCAGCA
ACGAAATTGTTGTTCGGAGTTGTCAAAAGTTTCTCGCCAGTAAAGATGGA
ATTAGCACCAGCAAGAAAACACAGTGCCTACTCTGGCATGGAAGAACGAA
TTCTTGCAGCTGATAATCTGACCATTGCTTTTGGCATGACTATNCNTGCT
GTAGCAATCATCCGAATCATCTCCCATATTTCAACTGGCTTCTGATCTTG
AAGAGGGGTTCCTTTCACTGCAAGCAGCGCATTGATGGGAACACTCTCTG
GATGAGTAGGGAGTGTTGCTAGTGTATGCAACAGACCAACTCTGTCCTCC
TCTGGTTCT
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