CK939298

Overview
NameCK939298
Unique NameCK939298
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length696
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK939298_ssr62 microsatellite CK939298_ssr62:62..81. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig11510 contig Csv1_Contig11510:1..701. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CK939298 vs. ExPASy Swiss-Prot
Match: NCPR_CATRO (NADPH--cytochrome P450 reductase OS=Catharanthus roseus GN=CPR PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.712e-38
Identity = 89/177 (50.28%), Postives = 104/177 (58.76%), Query Frame = 1 
Query:  175 KVSPFDLMSAIIRGGKXXXXXXXXXXXXXXXXXXX--LDNKEFVMILTTSIAVLIGCVVVFIXXXXXXXXXXXXXXXXXXXXXXXXXXX--DDGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVXXXXXXXXXXXXXXKLKKENIVFFFLATYGDGEPTDNAARFYKWF 693
            K+SPF+LMSAI++G K                     L+NKE VMILTTS+AVLIGCVVV I                             D+GK+K TIFFGTQTGTAEGFAKALA+EA+ARY+KA+ KV+              K +KE + FF LATYGDGEPTDNAARFYKWF
Sbjct:    7 KLSPFELMSAILKGAKLDGSNSSDSGVAVSPAVMAMLLENKELVMILTTSVAVLIGCVVVLIWRRSSGSGKKVVEPPKLIVPKSVVEPEEIDEGKKKFTIFFGTQTGTAEGFAKALAEEAKARYEKAVIKVIDIDDYAADDEEYEEKFRKETLAFFILATYGDGEPTDNAARFYKWF 183
[Close]
BLAST of CK939298 vs. ExPASy Swiss-Prot
Match: NCPR_PHAAU (NADPH--cytochrome P450 reductase OS=Phaseolus aureus PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.742e-27
Identity = 69/135 (51.11%), Postives = 79/135 (58.52%), Query Frame = 1 
Query:  298 VMILTTSIAVLIGCVVVFIXXXXXXXXXXXXXXXXXXXXXXXXXXXD--DGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVXXXXXXXXXXXXXXKLKKENIVFFFLATYGDGEPTDNAARFYKWFT 696
            ++I TTS AV++G +V                              D   GK KVTIFFGTQTGTAEGFAKALA+E +ARY+KA  KVV              KLKKE++VFF LATYGDGEP DNAARFYKWFT
Sbjct:   28 LLIATTSAAVVVGLLVFLWKKSSDRSKEVKPVVVPRDLMMEEEEEVDVAAGKTKVTIFFGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAADDDLYEEKLKKESLVFFMLATYGDGEPIDNAARFYKWFT 162
The following BLAST results are available for this feature:
BLAST of CK939298 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
NCPR_CATRO4.712e-3850.28NADPH--cytochrome P450 reductase OS=Catharanthus r... [more]
NCPR_PHAAU3.742e-2751.11NADPH--cytochrome P450 reductase OS=Phaseolus aure... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004752_F01 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IVF_F01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939298 ID=CK939298; Name=CK939298; organism=Citrus sinensis; type=EST; length=696bp
GGGGGAGGGAAGCTCTCACCTACACCACCAAATTCACCTACACAAAACAA
AGCGCTAGAGTGAGAGAGAGAGAGAGAGAGAGGGGTCTTCTCTTCTCCCG
CTCCATTTCCACTCGCTCTCCGACAAATTCATACTATGCAATCATCATCG
TCGTCATCAGAATCAGGCACGATGAAAGTATCGCCGTTCGACTTGATGTC
CGCGATCATTAGAGGTGGCAAGGTCGATCCGTCCAACGTGTCGTCGTCCG
GTTCAGGAGTTGAAGTTGCTTCGATTGTGCTCGACAATAAGGAGTTCGTT
ATGATCTTGACCACGTCTATTGCCGTCCTCATCGGCTGCGTCGTCGTTTT
TATTTTGCGGAGATCTAGTAGCTCCAAGCCAAAGAAGCTTGAGCCGCTCA
AGCCTTTGGTTGTTAAAGAGCCGGAAGTTGAGGTCGATGATGGAAAGCAG
AAGGTCACTATCTTCTTCGGTACTCAAACTGGCACAGCTGAAGGATTTGC
TAAGGCTTTAGCTGACGAAGCCAGGGCTCGATATGATAAGGCCATTTTTA
AAGTCGTCGATATTGATGATTACGCCGACGAGGAAGATGAATATGAAGAG
AAATTGAAGAAAGAGAATATAGTATTTTTCTTCTTGGCTACATATGGAGA
TGGTGAGCCAACCGACAATGCAGCTAGGTTCTATAAATGGTTTACG
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