CX675646
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX675646 vs. ExPASy Swiss-Prot
Match: DPOD2_ARATH (DNA polymerase delta small subunit OS=Arabidopsis thaliana GN=POLD2 PE=2 SV=1) HSP 1 Score: 335.495 bits (859), Expect = 1.725e-91 Identity = 169/248 (68.15%), Postives = 191/248 (77.02%), Query Frame = 3 Query: 9 MEIDGEEARLQRKQATYIFL-----------DEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPNWKPHLPICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYXXXXXXXXXXXXXXXPLQFQLLVDHXTGHLGDEKEQGIAAEIVHVVIAGNSIEIP 719 MEID E+ +RKQ+ Y L DE FEIQKE YRGQQYSQIYFARLHLMR LLYSL P WK HLP+C VL LE+G+EC+I+GTL+KHMKLKP +LDEYSKERS TPLVKPHNFMHPDD+L+LEDESGRVKL G+ L P+ YVTG+VVALHGKET+AGEF V DVL+AGL PQ E P++ EDKY PLQFQLLVDH TGHLGDE+EQG+AA+IVHVVIAGNS E P Sbjct: 1 MEIDSEKIH-ERKQSDYNSLVRTLLLYRLVQDERFEIQKEMYRGQQYSQIYFARLHLMRTLLYSLAPTWKSHLPVCKVLGLEKGKECIIVGTLFKHMKLKPCVLDEYSKERSVTPLVKPHNFMHPDDNLILEDESGRVKLAGSALSPAIYVTGVVVALHGKETNAGEFFVEDVLEAGLPPQIERPIDLQEDKYVVLLSGLCIGSKSANPLQFQLLVDHITGHLGDEEEQGLAAQIVHVVIAGNSFEFP 247
BLAST of CX675646 vs. ExPASy Swiss-Prot
Match: DPOD2_ORYSJ (DNA polymerase delta small subunit OS=Oryza sativa subsp. japonica GN=POLD2 PE=2 SV=1) HSP 1 Score: 311.612 bits (797), Expect = 2.667e-84 Identity = 154/227 (67.84%), Postives = 179/227 (78.85%), Query Frame = 3 Query: 36 LQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPNWKPHLPICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYXXXXXXXXXXXXXXXPLQFQLLVDHXTGHLGDEKEQGIAAEIVHVVIAGNSIEI 716 ++RKQA Y LDE + IQ E Y+GQQYS IYF RLH MR LL++LVP+WKPHLP+ TVL LEEG++C+I+GTLYKHMKLKPSILDEYSKERS PLVKPHNFMHPDDHL+LEDESGRV L GA + P+AYVTG+V+ALHGKETSAG FLV D+L+AG+ PQ LP + EDKY PLQFQLL+DH TGHLGDE EQ IA+ IV VV+AGNS+ I Sbjct: 1 MERKQAEYSNLDERYAIQGEKYQGQQYSHIYFTRLHHMRNLLHALVPSWKPHLPVTTVLGLEEGKDCIIVGTLYKHMKLKPSILDEYSKERSAIPLVKPHNFMHPDDHLILEDESGRVTLAGA-IPPAAYVTGVVIALHGKETSAGNFLVEDILEAGIPPQITLP-SINEDKYVVFVSGLSIGSEKFNPLQFQLLIDHITGHLGDENEQSIASNIVRVVVAGNSVHI 225
BLAST of CX675646 vs. ExPASy Swiss-Prot
Match: DPOD2_MOUSE (DNA polymerase delta subunit 2 OS=Mus musculus GN=Pold2 PE=2 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 2.218e-30 Identity = 85/219 (38.81%), Postives = 116/219 (52.97%), Query Frame = 3 Query: 51 ATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVP-NWKPHLPICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYXXXXXXXXXXXXXXXPLQFQLLVDHXTGHLGDEKEQGIAAEIVHVVIAGN 704 ATY +PF + + ++ +QY+ IY RL MR L + +W + + + EL+ G +C ++GTL+K M L+PSIL E S+E + P ++HPDD LVLEDE R+KL G + S VTG V+A+ G G F V D A LAPQK +P + L QLLVD TG LGDE EQ AA + V++AGN Sbjct: 30 ATYTNSSQPFRLGERSFN-RQYAHIYATRLIQMRPFLVTRAQQHWGSRVEVKKLCELQPGEQCCVVGTLFKAMSLQPSILREISEEHNLVPQPPRSKYIHPDDELVLEDELQRIKLKGT-IDVSKLVTGTVLAVLGSAKDDGRFQVEDHCFADLAPQKPVPPLDTDRFVLLVSGLGLGGGGGESLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGN 246
BLAST of CX675646 vs. ExPASy Swiss-Prot
Match: DPOD2_RAT (DNA polymerase delta subunit 2 OS=Rattus norvegicus GN=Pold2 PE=1 SV=1) HSP 1 Score: 131.724 bits (330), Expect = 3.783e-30 Identity = 85/219 (38.81%), Postives = 116/219 (52.97%), Query Frame = 3 Query: 51 ATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVP-NWKPHLPICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYXXXXXXXXXXXXXXXPLQFQLLVDHXTGHLGDEKEQGIAAEIVHVVIAGN 704 ATY +PF + + ++ +QY+ IY RL MR L S +W + + + EL+ G +C ++GTL+K M L+PSIL E S+E + P ++HPDD LVLEDE R+KL G + S VTG V+A+ G G+F V D A LAPQ +P + L QLLVD TG LGDE EQ AA + V++AGN Sbjct: 30 ATYTNSSQPFRLGERSFN-RQYAHIYATRLIQMRPFLVSRAQQHWGSQVEVKKLCELQPGEQCCVVGTLFKAMPLQPSILREISEEHNLIPQPPRSKYIHPDDELVLEDELQRIKLKGT-IDVSKLVTGTVLAVFGSVKDDGKFQVEDHCFADLAPQNPVPPLDTDRFVLLVSGLGLGGGGGESLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGN 246
BLAST of CX675646 vs. ExPASy Swiss-Prot
Match: DPOD2_BOVIN (DNA polymerase delta subunit 2 OS=Bos taurus GN=POLD2 PE=1 SV=2) HSP 1 Score: 130.568 bits (327), Expect = 8.427e-30 Identity = 88/220 (40.00%), Postives = 121/220 (55.00%), Query Frame = 3 Query: 54 TYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPN-WKPHLPICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQK-ELPLNSGEDKYXXXXXXXXXXXXXXXP-LQFQLLVDHXTGHLGDEKEQGIAAEIVHVVIAGN 704 TY +PF + + ++ +QY+ IY RL MR L S W + + + EL+ G +C ++GTL+K M L+PSIL E S+E + P ++HPDD L+LEDE R+KL G + S VTG V+A+ G G+FLV D AGLAPQK PL++ D++ L QLLVD TG LGDE EQ AA + V++AGN Sbjct: 31 TYTNSSQPFRLGERSF-SRQYAHIYATRLIQMRPFLVSRAQQRWGSGVLVKKLCELQPGEKCCVVGTLFKAMPLQPSILREVSEEHNLLPQPPRSKYIHPDDELILEDELQRIKLEGT-IDVSKLVTGTVLAVLGSAGDDGKFLVEDHCFAGLAPQKPACPLDT--DRFVLLVSGLGLGGGGGESLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGN 246
BLAST of CX675646 vs. ExPASy Swiss-Prot
Match: DPOD2_HUMAN (DNA polymerase delta subunit 2 OS=Homo sapiens GN=POLD2 PE=1 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 1.437e-29 Identity = 85/219 (38.81%), Postives = 116/219 (52.97%), Query Frame = 3 Query: 51 ATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVP-NWKPHLPICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYXXXXXXXXXXXXXXXPLQFQLLVDHXTGHLGDEKEQGIAAEIVHVVIAGN 704 ATY +PF + + ++ +QY+ IY RL MR L + +W + + + EL+ +C ++GTL+K M L+PSIL E S+E + P ++HPDD LVLEDE R+KL G + S VTG V+A+ G G+FLV D A LAPQK P + L QLLVD TG LGDE EQ AA + V++AGN Sbjct: 30 ATYTNSSQPFRLGERSF-SRQYAHIYATRLIQMRPFLENRAQQHWGSGVGVKKLCELQPEEKCCVVGTLFKAMPLQPSILREVSEEHNLLPQPPRSKYIHPDDELVLEDELQRIKLKGT-IDVSKLVTGTVLAVFGSVRDDGKFLVEDYCFADLAPQKPAPPLDTDRFVLLVSGLGLGGGGGESLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGN 246
BLAST of CX675646 vs. ExPASy Swiss-Prot
Match: DPOD2_XENLA (DNA polymerase delta subunit 2 OS=Xenopus laevis GN=pold2 PE=2 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 6.677e-27 Identity = 81/211 (38.39%), Postives = 113/211 (53.55%), Query Frame = 3 Query: 78 FEIQKETYRGQQYSQIYFARLHLMRALLY-SLVPNWKPHLPICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYXXXXXXXXXXXXXXXPLQ-FQLLVDHXTGHLGDEKEQGIAAEIVHVVIAGN 704 F + + T+ +QY+ IY RL MR LL S W + + + EL+ G +C +IGTL+K M+L+PSIL E S+E + P ++ D L+LEDE R+KL GA + VTG V+A+ G E AG+F+V D L Q LP S ED++ L QLL+D TG G E++QG AA I V++AGN Sbjct: 39 FRLGERTFT-RQYAHIYATRLEQMRPLLIKSAKQRWGDDIAVRKLCELQGGEKCCVIGTLFKSMELQPSILREISEEHNLLPQPARQKYISDSDELILEDELQRIKLEGATDV-QQLVTGAVLAVLGAEEDAGKFVVEDFCLTSLPVQSPLPRLS-EDRFVLLTSGLGLGGGSGDSLMGLQLLLDLVTGQAGAEEDQGCAARISRVILAGN 246
BLAST of CX675646 vs. ExPASy Swiss-Prot
Match: DPOD2_DROME (DNA polymerase delta small subunit OS=Drosophila melanogaster GN=CG12018 PE=2 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.153e-17 Identity = 77/235 (32.77%), Postives = 106/235 (45.11%), Query Frame = 3 Query: 42 RKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPN-WKPHLPICTVLEL--EEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELP---------LNSGEDKYXXXXXXXXXXXXXXXPLQFQLLVDHXTGHLGDEKEQGIAAEIVHVVIAGNSI 710 R + Y L F ++ Y+ +Q+ +Y RL M LL L W PI + EL E+ C++IGT++KH KPSIL + S+E P N+ P+D +VLEDE RV+L G +L TG+V A G S G F V D+L PQK L L SG D+ L G LG+ KE G +V +++AGNS+ Sbjct: 4 RLETKYENLSSIFRLKGHDYQ-KQFFHLYAHRLAEMTRLLTPLAQKKWGNKEPIKKLCELRGEQDVHCILIGTIFKHQAHKPSILRDISEENQLAPQPPRQNYSDPEDKIVLEDELQRVRLQG-KLNGQLLATGVVCAALGGTDSDGFFNVEDILFYESGPQKPLAPIKRSRLLVLASGLDQLQAHKFVE----------ALNLFQYWLAGSLGNNKEAG---SMVRLIVAGNSV 223
BLAST of CX675646 vs. ExPASy Swiss-Prot
Match: DPOD2_SCHPO (DNA polymerase subunit delta-2 OS=Schizosaccharomyces pombe GN=cdc1 PE=1 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 2.910e-14 Identity = 62/226 (27.43%), Postives = 103/226 (45.58%), Query Frame = 3 Query: 84 IQKETYRGQQYSQIYFARLHLMRALLYSLVPN-WKPHLPICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERST------TPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGED----KYXXXXXXXXXXXXXXXPLQFQLLVDHXTGHLGDEKEQGIAAEIVHVVIAGN----SIEI 716 + ++TY QQY+ IYFARL +R + W + VL+++ +C ++ T Y LKP+++++ ++ + +P V P + D LED+ GR+ G+ L + VTG+V+A+ G E G F+V+DV G+ +P+ + E +Y +Q LVD G L + I ++I GN SIEI Sbjct: 20 LSQQTY-SQQYASIYFARLTALRPRITEAASKKWPDKQRLERVLDVKSDEDCWVVATAYMTTALKPNVMNDVTQLHTIVTTTEESPYVSPEDAASGDIEYALEDDYGRIDCSGSFLYDAGVVTGVVLAVLGHEDEQGRFVVVDVCFPGIF-SHSIPMTTDESQAQPEYIAAVSGLGLSNDGIEGIQVHQLVDFLRGTL-PHVSSFSPSSIKRLIILGNCLAPSIEI 242
BLAST of CX675646 vs. ExPASy Swiss-Prot
Match: DPOD2_YEAST (DNA polymerase delta small subunit OS=Saccharomyces cerevisiae GN=HYS2 PE=1 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 4.202e-13 Identity = 55/165 (33.33%), Postives = 80/165 (48.48%), Query Frame = 3 Query: 75 PFEI--QKETYRGQQYSQIYFARLHLMRA-LLYSLVPNWKPHLPIC--------TVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTP-LVKPHNFMHP-DDHLVLEDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELP 530 PF++ +K Y G QY IY RL R +L W + VL+++ + C +G++Y MK KP++LDE + P L K + D ++LEDESGRV L G + + ++TG+VV + G E AG F VLD+ PQ P Sbjct: 39 PFQLCYKKRDY-GSQYYHIYQYRLKTFRERVLKECDKRWDAGFTLNGQLVLKKDKVLDIQGNQPCWCVGSIYCEMKYKPNVLDEVINDTYGAPDLTKSYTDKEGGSDEIMLEDESGRVLLVGDFIRSTPFITGVVVGILGMEAEAGTFQVLDICYPTPLPQNPFP 202 The following BLAST results are available for this feature:
BLAST of CX675646 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 10
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX675646 ID=CX675646; Name=CX675646; organism=Citrus sinensis; type=EST; length=721bpback to top |