CX675646

Overview
NameCX675646
Unique NameCX675646
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length721
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5515 contig Csv1_Contig5515:1..721. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675646 vs. ExPASy Swiss-Prot
Match: DPOD2_ARATH (DNA polymerase delta small subunit OS=Arabidopsis thaliana GN=POLD2 PE=2 SV=1)

HSP 1 Score: 335.495 bits (859), Expect = 1.725e-91
Identity = 169/248 (68.15%), Postives = 191/248 (77.02%), Query Frame = 3
Query:    9 MEIDGEEARLQRKQATYIFL-----------DEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPNWKPHLPICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYXXXXXXXXXXXXXXXPLQFQLLVDHXTGHLGDEKEQGIAAEIVHVVIAGNSIEIP 719
            MEID E+   +RKQ+ Y  L           DE FEIQKE YRGQQYSQIYFARLHLMR LLYSL P WK HLP+C VL LE+G+EC+I+GTL+KHMKLKP +LDEYSKERS TPLVKPHNFMHPDD+L+LEDESGRVKL G+ L P+ YVTG+VVALHGKET+AGEF V DVL+AGL PQ E P++  EDKY               PLQFQLLVDH TGHLGDE+EQG+AA+IVHVVIAGNS E P
Sbjct:    1 MEIDSEKIH-ERKQSDYNSLVRTLLLYRLVQDERFEIQKEMYRGQQYSQIYFARLHLMRTLLYSLAPTWKSHLPVCKVLGLEKGKECIIVGTLFKHMKLKPCVLDEYSKERSVTPLVKPHNFMHPDDNLILEDESGRVKLAGSALSPAIYVTGVVVALHGKETNAGEFFVEDVLEAGLPPQIERPIDLQEDKYVVLLSGLCIGSKSANPLQFQLLVDHITGHLGDEEEQGLAAQIVHVVIAGNSFEFP 247          
BLAST of CX675646 vs. ExPASy Swiss-Prot
Match: DPOD2_ORYSJ (DNA polymerase delta small subunit OS=Oryza sativa subsp. japonica GN=POLD2 PE=2 SV=1)

HSP 1 Score: 311.612 bits (797), Expect = 2.667e-84
Identity = 154/227 (67.84%), Postives = 179/227 (78.85%), Query Frame = 3
Query:   36 LQRKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPNWKPHLPICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYXXXXXXXXXXXXXXXPLQFQLLVDHXTGHLGDEKEQGIAAEIVHVVIAGNSIEI 716
            ++RKQA Y  LDE + IQ E Y+GQQYS IYF RLH MR LL++LVP+WKPHLP+ TVL LEEG++C+I+GTLYKHMKLKPSILDEYSKERS  PLVKPHNFMHPDDHL+LEDESGRV L GA + P+AYVTG+V+ALHGKETSAG FLV D+L+AG+ PQ  LP +  EDKY               PLQFQLL+DH TGHLGDE EQ IA+ IV VV+AGNS+ I
Sbjct:    1 MERKQAEYSNLDERYAIQGEKYQGQQYSHIYFTRLHHMRNLLHALVPSWKPHLPVTTVLGLEEGKDCIIVGTLYKHMKLKPSILDEYSKERSAIPLVKPHNFMHPDDHLILEDESGRVTLAGA-IPPAAYVTGVVIALHGKETSAGNFLVEDILEAGIPPQITLP-SINEDKYVVFVSGLSIGSEKFNPLQFQLLIDHITGHLGDENEQSIASNIVRVVVAGNSVHI 225          
BLAST of CX675646 vs. ExPASy Swiss-Prot
Match: DPOD2_MOUSE (DNA polymerase delta subunit 2 OS=Mus musculus GN=Pold2 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.218e-30
Identity = 85/219 (38.81%), Postives = 116/219 (52.97%), Query Frame = 3
Query:   51 ATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVP-NWKPHLPICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYXXXXXXXXXXXXXXXPLQFQLLVDHXTGHLGDEKEQGIAAEIVHVVIAGN 704
            ATY    +PF + + ++  +QY+ IY  RL  MR  L +    +W   + +  + EL+ G +C ++GTL+K M L+PSIL E S+E +  P      ++HPDD LVLEDE  R+KL G  +  S  VTG V+A+ G     G F V D   A LAPQK +P    +                   L  QLLVD  TG LGDE EQ  AA +  V++AGN
Sbjct:   30 ATYTNSSQPFRLGERSFN-RQYAHIYATRLIQMRPFLVTRAQQHWGSRVEVKKLCELQPGEQCCVVGTLFKAMSLQPSILREISEEHNLVPQPPRSKYIHPDDELVLEDELQRIKLKGT-IDVSKLVTGTVLAVLGSAKDDGRFQVEDHCFADLAPQKPVPPLDTDRFVLLVSGLGLGGGGGESLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGN 246          
BLAST of CX675646 vs. ExPASy Swiss-Prot
Match: DPOD2_RAT (DNA polymerase delta subunit 2 OS=Rattus norvegicus GN=Pold2 PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.783e-30
Identity = 85/219 (38.81%), Postives = 116/219 (52.97%), Query Frame = 3
Query:   51 ATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVP-NWKPHLPICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYXXXXXXXXXXXXXXXPLQFQLLVDHXTGHLGDEKEQGIAAEIVHVVIAGN 704
            ATY    +PF + + ++  +QY+ IY  RL  MR  L S    +W   + +  + EL+ G +C ++GTL+K M L+PSIL E S+E +  P      ++HPDD LVLEDE  R+KL G  +  S  VTG V+A+ G     G+F V D   A LAPQ  +P    +                   L  QLLVD  TG LGDE EQ  AA +  V++AGN
Sbjct:   30 ATYTNSSQPFRLGERSFN-RQYAHIYATRLIQMRPFLVSRAQQHWGSQVEVKKLCELQPGEQCCVVGTLFKAMPLQPSILREISEEHNLIPQPPRSKYIHPDDELVLEDELQRIKLKGT-IDVSKLVTGTVLAVFGSVKDDGKFQVEDHCFADLAPQNPVPPLDTDRFVLLVSGLGLGGGGGESLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGN 246          
BLAST of CX675646 vs. ExPASy Swiss-Prot
Match: DPOD2_BOVIN (DNA polymerase delta subunit 2 OS=Bos taurus GN=POLD2 PE=1 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 8.427e-30
Identity = 88/220 (40.00%), Postives = 121/220 (55.00%), Query Frame = 3
Query:   54 TYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPN-WKPHLPICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQK-ELPLNSGEDKYXXXXXXXXXXXXXXXP-LQFQLLVDHXTGHLGDEKEQGIAAEIVHVVIAGN 704
            TY    +PF + + ++  +QY+ IY  RL  MR  L S     W   + +  + EL+ G +C ++GTL+K M L+PSIL E S+E +  P      ++HPDD L+LEDE  R+KL G  +  S  VTG V+A+ G     G+FLV D   AGLAPQK   PL++  D++                 L  QLLVD  TG LGDE EQ  AA +  V++AGN
Sbjct:   31 TYTNSSQPFRLGERSF-SRQYAHIYATRLIQMRPFLVSRAQQRWGSGVLVKKLCELQPGEKCCVVGTLFKAMPLQPSILREVSEEHNLLPQPPRSKYIHPDDELILEDELQRIKLEGT-IDVSKLVTGTVLAVLGSAGDDGKFLVEDHCFAGLAPQKPACPLDT--DRFVLLVSGLGLGGGGGESLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGN 246          
BLAST of CX675646 vs. ExPASy Swiss-Prot
Match: DPOD2_HUMAN (DNA polymerase delta subunit 2 OS=Homo sapiens GN=POLD2 PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.437e-29
Identity = 85/219 (38.81%), Postives = 116/219 (52.97%), Query Frame = 3
Query:   51 ATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVP-NWKPHLPICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYXXXXXXXXXXXXXXXPLQFQLLVDHXTGHLGDEKEQGIAAEIVHVVIAGN 704
            ATY    +PF + + ++  +QY+ IY  RL  MR  L +    +W   + +  + EL+   +C ++GTL+K M L+PSIL E S+E +  P      ++HPDD LVLEDE  R+KL G  +  S  VTG V+A+ G     G+FLV D   A LAPQK  P    +                   L  QLLVD  TG LGDE EQ  AA +  V++AGN
Sbjct:   30 ATYTNSSQPFRLGERSF-SRQYAHIYATRLIQMRPFLENRAQQHWGSGVGVKKLCELQPEEKCCVVGTLFKAMPLQPSILREVSEEHNLLPQPPRSKYIHPDDELVLEDELQRIKLKGT-IDVSKLVTGTVLAVFGSVRDDGKFLVEDYCFADLAPQKPAPPLDTDRFVLLVSGLGLGGGGGESLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGN 246          
BLAST of CX675646 vs. ExPASy Swiss-Prot
Match: DPOD2_XENLA (DNA polymerase delta subunit 2 OS=Xenopus laevis GN=pold2 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.677e-27
Identity = 81/211 (38.39%), Postives = 113/211 (53.55%), Query Frame = 3
Query:   78 FEIQKETYRGQQYSQIYFARLHLMRALLY-SLVPNWKPHLPICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGEDKYXXXXXXXXXXXXXXXPLQ-FQLLVDHXTGHLGDEKEQGIAAEIVHVVIAGN 704
            F + + T+  +QY+ IY  RL  MR LL  S    W   + +  + EL+ G +C +IGTL+K M+L+PSIL E S+E +  P      ++   D L+LEDE  R+KL GA  +    VTG V+A+ G E  AG+F+V D     L  Q  LP  S ED++                L   QLL+D  TG  G E++QG AA I  V++AGN
Sbjct:   39 FRLGERTFT-RQYAHIYATRLEQMRPLLIKSAKQRWGDDIAVRKLCELQGGEKCCVIGTLFKSMELQPSILREISEEHNLLPQPARQKYISDSDELILEDELQRIKLEGATDV-QQLVTGAVLAVLGAEEDAGKFVVEDFCLTSLPVQSPLPRLS-EDRFVLLTSGLGLGGGSGDSLMGLQLLLDLVTGQAGAEEDQGCAARISRVILAGN 246          
BLAST of CX675646 vs. ExPASy Swiss-Prot
Match: DPOD2_DROME (DNA polymerase delta small subunit OS=Drosophila melanogaster GN=CG12018 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.153e-17
Identity = 77/235 (32.77%), Postives = 106/235 (45.11%), Query Frame = 3
Query:   42 RKQATYIFLDEPFEIQKETYRGQQYSQIYFARLHLMRALLYSLVPN-WKPHLPICTVLEL--EEGRECVIIGTLYKHMKLKPSILDEYSKERSTTPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELP---------LNSGEDKYXXXXXXXXXXXXXXXPLQFQLLVDHXTGHLGDEKEQGIAAEIVHVVIAGNSI 710
            R +  Y  L   F ++   Y+ +Q+  +Y  RL  M  LL  L    W    PI  + EL  E+   C++IGT++KH   KPSIL + S+E    P     N+  P+D +VLEDE  RV+L G +L      TG+V A  G   S G F V D+L     PQK L          L SG D+                     L      G LG+ KE G    +V +++AGNS+
Sbjct:    4 RLETKYENLSSIFRLKGHDYQ-KQFFHLYAHRLAEMTRLLTPLAQKKWGNKEPIKKLCELRGEQDVHCILIGTIFKHQAHKPSILRDISEENQLAPQPPRQNYSDPEDKIVLEDELQRVRLQG-KLNGQLLATGVVCAALGGTDSDGFFNVEDILFYESGPQKPLAPIKRSRLLVLASGLDQLQAHKFVE----------ALNLFQYWLAGSLGNNKEAG---SMVRLIVAGNSV 223          
BLAST of CX675646 vs. ExPASy Swiss-Prot
Match: DPOD2_SCHPO (DNA polymerase subunit delta-2 OS=Schizosaccharomyces pombe GN=cdc1 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.910e-14
Identity = 62/226 (27.43%), Postives = 103/226 (45.58%), Query Frame = 3
Query:   84 IQKETYRGQQYSQIYFARLHLMRALLYSLVPN-WKPHLPICTVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERST------TPLVKPHNFMHPDDHLVLEDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELPLNSGED----KYXXXXXXXXXXXXXXXPLQFQLLVDHXTGHLGDEKEQGIAAEIVHVVIAGN----SIEI 716
            + ++TY  QQY+ IYFARL  +R  +       W     +  VL+++   +C ++ T Y    LKP+++++ ++  +       +P V P +    D    LED+ GR+   G+ L  +  VTG+V+A+ G E   G F+V+DV   G+     +P+ + E     +Y                +Q   LVD   G L         + I  ++I GN    SIEI
Sbjct:   20 LSQQTY-SQQYASIYFARLTALRPRITEAASKKWPDKQRLERVLDVKSDEDCWVVATAYMTTALKPNVMNDVTQLHTIVTTTEESPYVSPEDAASGDIEYALEDDYGRIDCSGSFLYDAGVVTGVVLAVLGHEDEQGRFVVVDVCFPGIF-SHSIPMTTDESQAQPEYIAAVSGLGLSNDGIEGIQVHQLVDFLRGTL-PHVSSFSPSSIKRLIILGNCLAPSIEI 242          
BLAST of CX675646 vs. ExPASy Swiss-Prot
Match: DPOD2_YEAST (DNA polymerase delta small subunit OS=Saccharomyces cerevisiae GN=HYS2 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.202e-13
Identity = 55/165 (33.33%), Postives = 80/165 (48.48%), Query Frame = 3
Query:   75 PFEI--QKETYRGQQYSQIYFARLHLMRA-LLYSLVPNWKPHLPIC--------TVLELEEGRECVIIGTLYKHMKLKPSILDEYSKERSTTP-LVKPHNFMHP-DDHLVLEDESGRVKLGGAELLPSAYVTGIVVALHGKETSAGEFLVLDVLDAGLAPQKELP 530
            PF++  +K  Y G QY  IY  RL   R  +L      W     +          VL+++  + C  +G++Y  MK KP++LDE   +    P L K +       D ++LEDESGRV L G  +  + ++TG+VV + G E  AG F VLD+      PQ   P
Sbjct:   39 PFQLCYKKRDY-GSQYYHIYQYRLKTFRERVLKECDKRWDAGFTLNGQLVLKKDKVLDIQGNQPCWCVGSIYCEMKYKPNVLDEVINDTYGAPDLTKSYTDKEGGSDEIMLEDESGRVLLVGDFIRSTPFITGVVVGILGMEAEAGTFQVLDICYPTPLPQNPFP 202          
The following BLAST results are available for this feature:
BLAST of CX675646 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
DPOD2_ARATH1.725e-9168.15DNA polymerase delta small subunit OS=Arabidopsis ... [more]
DPOD2_ORYSJ2.667e-8467.84DNA polymerase delta small subunit OS=Oryza sativa... [more]
DPOD2_MOUSE2.218e-3038.81DNA polymerase delta subunit 2 OS=Mus musculus GN=... [more]
DPOD2_RAT3.783e-3038.81DNA polymerase delta subunit 2 OS=Rattus norvegicu... [more]
DPOD2_BOVIN8.427e-3040.00DNA polymerase delta subunit 2 OS=Bos taurus GN=PO... [more]
DPOD2_HUMAN1.437e-2938.81DNA polymerase delta subunit 2 OS=Homo sapiens GN=... [more]
DPOD2_XENLA6.677e-2738.39DNA polymerase delta subunit 2 OS=Xenopus laevis G... [more]
DPOD2_DROME2.153e-1732.77DNA polymerase delta small subunit OS=Drosophila m... [more]
DPOD2_SCHPO2.910e-1427.43DNA polymerase subunit delta-2 OS=Schizosaccharomy... [more]
DPOD2_YEAST4.202e-1333.33DNA polymerase delta small subunit OS=Saccharomyce... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_63G04_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-63G04-M7-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675646 ID=CX675646; Name=CX675646; organism=Citrus sinensis; type=EST; length=721bp
CAGAAACCATGGAAATCGACGGGGAAGAAGCTCGTCTTCAGAGAAAGCAA
GCCACCTATATCTTCTTGGACGAGCCTTTTGAAATACAAAAGGAGACATA
CAGGGGTCAACAATACAGCCAAATTTATTTTGCTCGTCTTCACTTGATGC
GAGCTCTGCTTTATTCTCTTGTTCCCAATTGGAAACCCCATTTGCCAATT
TGTACGGTATTGGAACTGGAAGAAGGCAGGGAATGCGTCATCATTGGGAC
CCTGTACAAGCACATGAAACTCAAGCCTTCAATTCTTGATGAGTATTCCA
AGGAGAGATCTACAACCCCACTTGTAAAGCCTCACAACTTTATGCATCCN
GATGATCATTTAGTTCTGGAAGATGAGAGTGGAAGAGTTAAACTTGGTGG
TGCTGAACTTTTGCCTTCAGCGTATGTAACAGGCATTGTTGTTGCTTTGC
ATGGTAAGGAAACTAGTGCTGGTGAGTTTTTGGTTCTGGATGTCTTAGAT
GCTGGCCTGGCACCTCAGAAAGAGTTGCCACTTAACTCAGGAGAAGACAA
ATATGTTGTACTTGTGTCAGGGTTAAATGTTGGAAGTGGCACATCTAACC
CACTCCAGTTTCAGCTTCTTGTTGATCATATNACAGGACATCTGGGAGAT
GAAAAGGAACAAGGTATTGCAGCGGAGATAGTTCATGTTGTTATTGCTGG
AAACTCTATTGAAATTCCCCG
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