CX675645
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX675645 vs. ExPASy Swiss-Prot
Match: DPOD2_ARATH (DNA polymerase delta small subunit OS=Arabidopsis thaliana GN=POLD2 PE=2 SV=1) HSP 1 Score: 285.419 bits (729), Expect = 2.194e-76 Identity = 126/158 (79.75%), Postives = 144/158 (91.14%), Query Frame = -1 Query: 271 DPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSFGTQFS 744 DPANF+LPQQPLNRCLFPGS+ YNTFRSCTNPH F++DN+RFLGTSGQ IDDL KYSEA +L+F+ERTLRWRHLAPTAPNTLGCYPFTDRDPFL+E+CPHVYF GNQ K++ RL+KGS+ QLVRL+CIPKF ETG+AV VNL+NLECHTLSF TQ + Sbjct: 297 DPANFALPQQPLNRCLFPGSSPYNTFRSCTNPHSFDVDNIRFLGTSGQNIDDLGKYSEAKSKLDFVERTLRWRHLAPTAPNTLGCYPFTDRDPFLIETCPHVYFVGNQDKYDNRLIKGSEGQLVRLICIPKFCETGIAVAVNLRNLECHTLSFSTQIN 454
BLAST of CX675645 vs. ExPASy Swiss-Prot
Match: DPOD2_ORYSJ (DNA polymerase delta small subunit OS=Oryza sativa subsp. japonica GN=POLD2 PE=2 SV=1) HSP 1 Score: 269.626 bits (688), Expect = 1.246e-71 Identity = 120/157 (76.43%), Postives = 143/157 (91.08%), Query Frame = -1 Query: 274 DPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSFGTQF 744 DPANFSLPQQPL+RCLF G+ATYNTF SC+NPH FELD+VRF+GTSGQ IDDL KYS+A D+LEF+ERTLRWRHLAPTAPN+LGCYP+TD+DPFLVESCPHVYF GNQ K+ET+LL+G ++Q VRL+CIP+F ++GVAV++NL+NLEC TLSF T F Sbjct: 271 DPANFSLPQQPLHRCLFAGAATYNTFSSCSNPHQFELDSVRFIGTSGQNIDDLYKYSDAKDKLEFVERTLRWRHLAPTAPNSLGCYPYTDKDPFLVESCPHVYFVGNQDKYETQLLQGLEKQKVRLICIPRFCDSGVAVMLNLRNLECSTLSFSTSF 427
BLAST of CX675645 vs. ExPASy Swiss-Prot
Match: DPOD2_MOUSE (DNA polymerase delta subunit 2 OS=Mus musculus GN=Pold2 PE=2 SV=1) HSP 1 Score: 179.104 bits (453), Expect = 2.215e-44 Identity = 79/153 (51.63%), Postives = 108/153 (70.59%), Query Frame = -1 Query: 286 DPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSF 744 DP N++LPQQPL+ C+FP + Y+T + TNP+ +D VRFLGTSGQ + D+ +YS D LE +E TLR RH++PTAP+TLGCYPF DPF+ CPHVYF GN F +++++G + Q+V LV +P FS T A +VNL++L C +SF Sbjct: 300 DPTNYTLPQQPLHPCMFPLATAYSTLQLVTNPYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLRVRHISPTAPDTLGCYPFYKTDPFIFPECPHVYFCGNTPSFGSKIIRGPEDQVVLLVAVPDFSSTQTACLVNLRSLACQPISF 452
BLAST of CX675645 vs. ExPASy Swiss-Prot
Match: DPOD2_XENLA (DNA polymerase delta subunit 2 OS=Xenopus laevis GN=pold2 PE=2 SV=1) HSP 1 Score: 178.718 bits (452), Expect = 2.893e-44 Identity = 81/153 (52.94%), Postives = 109/153 (71.24%), Query Frame = -1 Query: 286 DPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSF 744 DP N+ LPQQPL+RC+FP SA Y+T + TNP+ E+D VRFLGTSGQ I D+ KYS D L+ +E TL+ HL PTAP+TLGCYPF DPF++++CPHVYF G+ KF + + G++ Q V L+ +P+F T A +VNL+ L+C +SF Sbjct: 300 DPTNYILPQQPLHRCMFPQSALYSTLQLVTNPYEAEIDGVRFLGTSGQNIGDIYKYSSMQDYLDILEWTLQVGHLCPTAPDTLGCYPFYKSDPFILQNCPHVYFCGSAPKFSCKEVTGAEGQRVLLLTVPEFCSTQTACLVNLRTLQCQPISF 452
BLAST of CX675645 vs. ExPASy Swiss-Prot
Match: DPOD2_HUMAN (DNA polymerase delta subunit 2 OS=Homo sapiens GN=POLD2 PE=1 SV=1) HSP 1 Score: 177.563 bits (449), Expect = 6.444e-44 Identity = 79/153 (51.63%), Postives = 107/153 (69.93%), Query Frame = -1 Query: 286 DPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSF 744 DP N++LPQQPL+ C+FP + Y+T + TNP+ +D VRFLGTSGQ + D+ +YS D LE +E TLR RH++PTAP+TLGCYPF DPF+ CPHVYF GN F +++++G + Q V LV +P FS T A +VNL++L C +SF Sbjct: 300 DPTNYTLPQQPLHPCMFPLATAYSTLQLVTNPYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLRVRHISPTAPDTLGCYPFYKTDPFIFPECPHVYFCGNTPSFGSKIIRGPEDQTVLLVTVPDFSATQTACLVNLRSLACQPISF 452
BLAST of CX675645 vs. ExPASy Swiss-Prot
Match: DPOD2_RAT (DNA polymerase delta subunit 2 OS=Rattus norvegicus GN=Pold2 PE=1 SV=1) HSP 1 Score: 176.407 bits (446), Expect = 1.436e-43 Identity = 79/153 (51.63%), Postives = 105/153 (68.63%), Query Frame = -1 Query: 286 DPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSF 744 DP N++LPQQPL+ C+FP + Y T + TNP+ +D VRFLGTSGQ + D+ +YS D LE +E TLR RH++PTAP+TLGCYPF DPF+ CPHVYF GN F +++++G + Q V LV +P FS T A +VNL+ L C +SF Sbjct: 300 DPTNYTLPQQPLHPCMFPLATAYATLQLVTNPYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLRVRHISPTAPDTLGCYPFYKTDPFIFAECPHVYFCGNTPSFGSKVIRGPEDQAVLLVAVPDFSSTQTACLVNLRGLTCQPISF 452
BLAST of CX675645 vs. ExPASy Swiss-Prot
Match: DPOD2_BOVIN (DNA polymerase delta subunit 2 OS=Bos taurus GN=POLD2 PE=1 SV=2) HSP 1 Score: 176.022 bits (445), Expect = 1.875e-43 Identity = 78/153 (50.98%), Postives = 107/153 (69.93%), Query Frame = -1 Query: 286 DPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSF 744 DP N++LPQQPL+ C+FP + Y+T + TNP+ +D VRFLGTSGQ + D+ +YS D LE +E TL+ RH++PTAP+TLGCYPF DPF+ CPHVYF GN F +++++G + Q V LV +P FS T A +VNL++L C +SF Sbjct: 300 DPTNYTLPQQPLHPCMFPLATAYSTLQLVTNPYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLQVRHISPTAPDTLGCYPFYKTDPFIFPECPHVYFCGNTPSFGSKIIQGPEDQTVLLVAVPDFSTTQTACLVNLRSLACQPISF 452
BLAST of CX675645 vs. ExPASy Swiss-Prot
Match: DPOD2_DROME (DNA polymerase delta small subunit OS=Drosophila melanogaster GN=CG12018 PE=2 SV=1) HSP 1 Score: 168.318 bits (425), Expect = 3.910e-41 Identity = 74/153 (48.37%), Postives = 104/153 (67.97%), Query Frame = -1 Query: 286 DPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSF 744 DPANF LPQQP ++C+FP +A TF++ TNP+ LD +GTSGQ + DL + + + LE + TL W H+APTAP+TL CYP+ + DPF++ CPHVY+AGN + F T L +GS+ + RLVC+P FS+T VV+L L+C ++F Sbjct: 274 DPANFMLPQQPFHKCMFPQAAQLATFQAVTNPYSCRLDEALVVGTSGQNVSDLLRSTSLDSALEALRCTLTWGHVAPTAPDTLACYPYIESDPFILRECPHVYYAGNCESFATELHEGSEGKRTRLVCVPSFSKTQSVAVVDLDTLDCRMVNF 426
BLAST of CX675645 vs. ExPASy Swiss-Prot
Match: DPOD2_SCHPO (DNA polymerase subunit delta-2 OS=Schizosaccharomyces pombe GN=cdc1 PE=1 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 2.906e-28 Identity = 63/155 (40.65%), Postives = 93/155 (60.00%), Query Frame = -1 Query: 286 DPANFSLPQQPLNRCLFPGSATY--NTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSF 744 D ++ LPQQPL+ L S + ++ ++ TNP L N L TSGQ I+DL+KY L+ ME TL W H+ PT+P+TL CYPFTD+D F++E P +Y GNQ KF + + + ++LV +P+F +TGV V++N+ L + F Sbjct: 296 DYSSTILPQQPLHPALLTKSKVWLGSSLQTVTNPTWLSLGNHFVLATSGQNINDLRKYHPKKSSLQCMENTLLWNHITPTSPDTLWCYPFTDKDTFVMEEMPDLYLCGNQPKFGCKTVINEGNR-IQLVSVPEFRKTGVLVLINMHTLNVEIIQF 449
BLAST of CX675645 vs. ExPASy Swiss-Prot
Match: DPOD2_YEAST (DNA polymerase delta small subunit OS=Saccharomyces cerevisiae GN=HYS2 PE=1 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 5.481e-27 Identity = 64/181 (35.36%), Postives = 105/181 (58.01%), Query Frame = -1 Query: 292 DPANFSLPQQPLNRCLFPGS-------ATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKY----------------SEAND-------QLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTL 744 DP++ SLPQQP ++ LF S + TNP+ F + V L SG+ I+D+ KY E+ND +L+ ME T++W+++APTAP+TL CYP+TD+DPF+++ PHVY NQ F TR+++ + ++++ +P+FS TG+ ++++L+ LE T+ Sbjct: 304 DPSDKSLPQQPFHKSLFDKSLESYFNGSNKEILNLVTNPYEFSYNGVDVLAVSGKNINDICKYVIPSNDNGESENKVEEGESNDFKDDIEHRLDLMECTMKWQNIAPTAPDTLWCYPYTDKDPFVLDKWPHVYIVANQPYFGTRVVEIGGKN-IKIISVPEFSSTGMIILLDLETLEAETV 483 The following BLAST results are available for this feature:
BLAST of CX675645 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 11
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Sequences
The
following sequences are available for this feature:
EST sequence >CX675645 ID=CX675645; Name=CX675645; organism=Citrus sinensis; type=EST; length=744bpback to top |