CX675645

Overview
NameCX675645
Unique NameCX675645
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length744
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675645 vs. ExPASy Swiss-Prot
Match: DPOD2_ARATH (DNA polymerase delta small subunit OS=Arabidopsis thaliana GN=POLD2 PE=2 SV=1)

HSP 1 Score: 285.419 bits (729), Expect = 2.194e-76
Identity = 126/158 (79.75%), Postives = 144/158 (91.14%), Query Frame = -1
Query:  271 DPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSFGTQFS 744
            DPANF+LPQQPLNRCLFPGS+ YNTFRSCTNPH F++DN+RFLGTSGQ IDDL KYSEA  +L+F+ERTLRWRHLAPTAPNTLGCYPFTDRDPFL+E+CPHVYF GNQ K++ RL+KGS+ QLVRL+CIPKF ETG+AV VNL+NLECHTLSF TQ +
Sbjct:  297 DPANFALPQQPLNRCLFPGSSPYNTFRSCTNPHSFDVDNIRFLGTSGQNIDDLGKYSEAKSKLDFVERTLRWRHLAPTAPNTLGCYPFTDRDPFLIETCPHVYFVGNQDKYDNRLIKGSEGQLVRLICIPKFCETGIAVAVNLRNLECHTLSFSTQIN 454          
BLAST of CX675645 vs. ExPASy Swiss-Prot
Match: DPOD2_ORYSJ (DNA polymerase delta small subunit OS=Oryza sativa subsp. japonica GN=POLD2 PE=2 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 1.246e-71
Identity = 120/157 (76.43%), Postives = 143/157 (91.08%), Query Frame = -1
Query:  274 DPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSFGTQF 744
            DPANFSLPQQPL+RCLF G+ATYNTF SC+NPH FELD+VRF+GTSGQ IDDL KYS+A D+LEF+ERTLRWRHLAPTAPN+LGCYP+TD+DPFLVESCPHVYF GNQ K+ET+LL+G ++Q VRL+CIP+F ++GVAV++NL+NLEC TLSF T F
Sbjct:  271 DPANFSLPQQPLHRCLFAGAATYNTFSSCSNPHQFELDSVRFIGTSGQNIDDLYKYSDAKDKLEFVERTLRWRHLAPTAPNSLGCYPYTDKDPFLVESCPHVYFVGNQDKYETQLLQGLEKQKVRLICIPRFCDSGVAVMLNLRNLECSTLSFSTSF 427          
BLAST of CX675645 vs. ExPASy Swiss-Prot
Match: DPOD2_MOUSE (DNA polymerase delta subunit 2 OS=Mus musculus GN=Pold2 PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.215e-44
Identity = 79/153 (51.63%), Postives = 108/153 (70.59%), Query Frame = -1
Query:  286 DPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSF 744
            DP N++LPQQPL+ C+FP +  Y+T +  TNP+   +D VRFLGTSGQ + D+ +YS   D LE +E TLR RH++PTAP+TLGCYPF   DPF+   CPHVYF GN   F +++++G + Q+V LV +P FS T  A +VNL++L C  +SF
Sbjct:  300 DPTNYTLPQQPLHPCMFPLATAYSTLQLVTNPYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLRVRHISPTAPDTLGCYPFYKTDPFIFPECPHVYFCGNTPSFGSKIIRGPEDQVVLLVAVPDFSSTQTACLVNLRSLACQPISF 452          
BLAST of CX675645 vs. ExPASy Swiss-Prot
Match: DPOD2_XENLA (DNA polymerase delta subunit 2 OS=Xenopus laevis GN=pold2 PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.893e-44
Identity = 81/153 (52.94%), Postives = 109/153 (71.24%), Query Frame = -1
Query:  286 DPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSF 744
            DP N+ LPQQPL+RC+FP SA Y+T +  TNP+  E+D VRFLGTSGQ I D+ KYS   D L+ +E TL+  HL PTAP+TLGCYPF   DPF++++CPHVYF G+  KF  + + G++ Q V L+ +P+F  T  A +VNL+ L+C  +SF
Sbjct:  300 DPTNYILPQQPLHRCMFPQSALYSTLQLVTNPYEAEIDGVRFLGTSGQNIGDIYKYSSMQDYLDILEWTLQVGHLCPTAPDTLGCYPFYKSDPFILQNCPHVYFCGSAPKFSCKEVTGAEGQRVLLLTVPEFCSTQTACLVNLRTLQCQPISF 452          
BLAST of CX675645 vs. ExPASy Swiss-Prot
Match: DPOD2_HUMAN (DNA polymerase delta subunit 2 OS=Homo sapiens GN=POLD2 PE=1 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 6.444e-44
Identity = 79/153 (51.63%), Postives = 107/153 (69.93%), Query Frame = -1
Query:  286 DPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSF 744
            DP N++LPQQPL+ C+FP +  Y+T +  TNP+   +D VRFLGTSGQ + D+ +YS   D LE +E TLR RH++PTAP+TLGCYPF   DPF+   CPHVYF GN   F +++++G + Q V LV +P FS T  A +VNL++L C  +SF
Sbjct:  300 DPTNYTLPQQPLHPCMFPLATAYSTLQLVTNPYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLRVRHISPTAPDTLGCYPFYKTDPFIFPECPHVYFCGNTPSFGSKIIRGPEDQTVLLVTVPDFSATQTACLVNLRSLACQPISF 452          
BLAST of CX675645 vs. ExPASy Swiss-Prot
Match: DPOD2_RAT (DNA polymerase delta subunit 2 OS=Rattus norvegicus GN=Pold2 PE=1 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.436e-43
Identity = 79/153 (51.63%), Postives = 105/153 (68.63%), Query Frame = -1
Query:  286 DPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSF 744
            DP N++LPQQPL+ C+FP +  Y T +  TNP+   +D VRFLGTSGQ + D+ +YS   D LE +E TLR RH++PTAP+TLGCYPF   DPF+   CPHVYF GN   F +++++G + Q V LV +P FS T  A +VNL+ L C  +SF
Sbjct:  300 DPTNYTLPQQPLHPCMFPLATAYATLQLVTNPYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLRVRHISPTAPDTLGCYPFYKTDPFIFAECPHVYFCGNTPSFGSKVIRGPEDQAVLLVAVPDFSSTQTACLVNLRGLTCQPISF 452          
BLAST of CX675645 vs. ExPASy Swiss-Prot
Match: DPOD2_BOVIN (DNA polymerase delta subunit 2 OS=Bos taurus GN=POLD2 PE=1 SV=2)

HSP 1 Score: 176.022 bits (445), Expect = 1.875e-43
Identity = 78/153 (50.98%), Postives = 107/153 (69.93%), Query Frame = -1
Query:  286 DPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSF 744
            DP N++LPQQPL+ C+FP +  Y+T +  TNP+   +D VRFLGTSGQ + D+ +YS   D LE +E TL+ RH++PTAP+TLGCYPF   DPF+   CPHVYF GN   F +++++G + Q V LV +P FS T  A +VNL++L C  +SF
Sbjct:  300 DPTNYTLPQQPLHPCMFPLATAYSTLQLVTNPYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLQVRHISPTAPDTLGCYPFYKTDPFIFPECPHVYFCGNTPSFGSKIIQGPEDQTVLLVAVPDFSTTQTACLVNLRSLACQPISF 452          
BLAST of CX675645 vs. ExPASy Swiss-Prot
Match: DPOD2_DROME (DNA polymerase delta small subunit OS=Drosophila melanogaster GN=CG12018 PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.910e-41
Identity = 74/153 (48.37%), Postives = 104/153 (67.97%), Query Frame = -1
Query:  286 DPANFSLPQQPLNRCLFPGSATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSF 744
            DPANF LPQQP ++C+FP +A   TF++ TNP+   LD    +GTSGQ + DL + +  +  LE +  TL W H+APTAP+TL CYP+ + DPF++  CPHVY+AGN + F T L +GS+ +  RLVC+P FS+T    VV+L  L+C  ++F
Sbjct:  274 DPANFMLPQQPFHKCMFPQAAQLATFQAVTNPYSCRLDEALVVGTSGQNVSDLLRSTSLDSALEALRCTLTWGHVAPTAPDTLACYPYIESDPFILRECPHVYYAGNCESFATELHEGSEGKRTRLVCVPSFSKTQSVAVVDLDTLDCRMVNF 426          
BLAST of CX675645 vs. ExPASy Swiss-Prot
Match: DPOD2_SCHPO (DNA polymerase subunit delta-2 OS=Schizosaccharomyces pombe GN=cdc1 PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.906e-28
Identity = 63/155 (40.65%), Postives = 93/155 (60.00%), Query Frame = -1
Query:  286 DPANFSLPQQPLNRCLFPGSATY--NTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKYSEANDQLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTLSF 744
            D ++  LPQQPL+  L   S  +  ++ ++ TNP    L N   L TSGQ I+DL+KY      L+ ME TL W H+ PT+P+TL CYPFTD+D F++E  P +Y  GNQ KF  + +     + ++LV +P+F +TGV V++N+  L    + F
Sbjct:  296 DYSSTILPQQPLHPALLTKSKVWLGSSLQTVTNPTWLSLGNHFVLATSGQNINDLRKYHPKKSSLQCMENTLLWNHITPTSPDTLWCYPFTDKDTFVMEEMPDLYLCGNQPKFGCKTVINEGNR-IQLVSVPEFRKTGVLVLINMHTLNVEIIQF 449          
BLAST of CX675645 vs. ExPASy Swiss-Prot
Match: DPOD2_YEAST (DNA polymerase delta small subunit OS=Saccharomyces cerevisiae GN=HYS2 PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.481e-27
Identity = 64/181 (35.36%), Postives = 105/181 (58.01%), Query Frame = -1
Query:  292 DPANFSLPQQPLNRCLFPGS-------ATYNTFRSCTNPHCFELDNVRFLGTSGQTIDDLQKY----------------SEAND-------QLEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFLVESCPHVYFAGNQQKFETRLLKGSDRQLVRLVCIPKFSETGVAVVVNLKNLECHTL 744
            DP++ SLPQQP ++ LF  S       +        TNP+ F  + V  L  SG+ I+D+ KY                 E+ND       +L+ ME T++W+++APTAP+TL CYP+TD+DPF+++  PHVY   NQ  F TR+++   +  ++++ +P+FS TG+ ++++L+ LE  T+
Sbjct:  304 DPSDKSLPQQPFHKSLFDKSLESYFNGSNKEILNLVTNPYEFSYNGVDVLAVSGKNINDICKYVIPSNDNGESENKVEEGESNDFKDDIEHRLDLMECTMKWQNIAPTAPDTLWCYPYTDKDPFVLDKWPHVYIVANQPYFGTRVVEIGGKN-IKIISVPEFSSTGMIILLDLETLEAETV 483          
The following BLAST results are available for this feature:
BLAST of CX675645 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
DPOD2_ARATH2.194e-7679.75DNA polymerase delta small subunit OS=Arabidopsis ... [more]
DPOD2_ORYSJ1.246e-7176.43DNA polymerase delta small subunit OS=Oryza sativa... [more]
DPOD2_MOUSE2.215e-4451.63DNA polymerase delta subunit 2 OS=Mus musculus GN=... [more]
DPOD2_XENLA2.893e-4452.94DNA polymerase delta subunit 2 OS=Xenopus laevis G... [more]
DPOD2_HUMAN6.444e-4451.63DNA polymerase delta subunit 2 OS=Homo sapiens GN=... [more]
DPOD2_RAT1.436e-4351.63DNA polymerase delta subunit 2 OS=Rattus norvegicu... [more]
DPOD2_BOVIN1.875e-4350.98DNA polymerase delta subunit 2 OS=Bos taurus GN=PO... [more]
DPOD2_DROME3.910e-4148.37DNA polymerase delta small subunit OS=Drosophila m... [more]
DPOD2_SCHPO2.906e-2840.65DNA polymerase subunit delta-2 OS=Schizosaccharomy... [more]
DPOD2_YEAST5.481e-2735.36DNA polymerase delta small subunit OS=Saccharomyce... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_63G04_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-63G04-M7-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675645 ID=CX675645; Name=CX675645; organism=Citrus sinensis; type=EST; length=744bp
TTTTTTTTAACATCAAACGTTTATAATGGTACAAGTTAACATACATTACA
TCGGTGTTAAATGAACAAAGGTGTCACAAATGCAAAAATTCTACAATCAA
ATGTTAGGCTGCCAGAATTTGTGATTCAGGTTCCGGTTAAAGGTCCGAGC
ATGATGCTGGTTCCGGTCAACTTGTGAATTTATGGCACATCAAAATCCTC
CCACACGAAACTACTACTTTTCTGCAGGAAATGTTCATTGAGGTAGCTGC
TGGTATCCATGCCATCATCAGCTGAATTGAGTCCCAAAACTGAGAGTGTG
GCACTCGAGATTTTTGAGGTTAACCACTACAGCAACTCCGGTCTCGCTGA
ACTTAGGAATGCAAACCAGTCTAACCAACTGCCTGTCTGATCCTTTGAGC
AAGCGAGTTTCAAATTTTTGTTGATTACCGGCAAAGTAAACATGAGGACA
GCTCTCAACCAGAAAAGGATCCCTATCGGTGAAAGGGTAACATCCAAGAG
TATTGGGTGCTGTTGGTGCCAGATGCCTCCACCTTAATGTTCTTTCCATA
AATTCAAGCTGATCGTTTGCCTCTGAATATTTCTGAAGATCGTCTATGGT
TTGACCTGATGTTCCAAGAAATCTAACGTTGTCAAGCTCAAAGCAATGGG
GATTAGTGCAAGATCTAAATGTGTTATAAGTGGCAGACCCAGGGAAAAGG
CATCTGTTCAATGGCTGCTGAGGTAAAGAAAAGTTTGCTGGATC
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