CK939256

Overview
NameCK939256
Unique NameCK939256
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length947
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CK939256 vs. ExPASy Swiss-Prot
Match: RHA2B_ARATH (RING-H2 zinc finger protein RHA2b OS=Arabidopsis thaliana GN=RHA2B PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.912e-12
Identity = 32/76 (42.11%), Postives = 46/76 (60.53%), Query Frame = 1 
Query:  553 LSYVEEFRNQNPAIKYETLLHCEDAEHDCSVCLTEFEPQSDINNLSCGHLFHKVCLEKWLDYLNVTCPLCRTPLIP 780
            LS + +  N N    Y    + ++A  DC VCL++ +   ++  L C H+FHK CLE WL +LN  CPLCR+PL+P
Sbjct:   49 LSVLADQLNLNRLFSYR---YSDNAASDCIVCLSKLKTGEEVRKLDCRHVFHKQCLEGWLQHLNFNCPLCRSPLLP 121
The following BLAST results are available for this feature:
BLAST of CK939256 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RHA2B_ARATH1.912e-1242.11RING-H2 zinc finger protein RHA2b OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionCGF1004432_C12 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650003_IF_C12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939256 ID=CK939256; Name=CK939256; organism=Citrus sinensis; type=EST; length=947bp
GGGGGCAAGCAAGCCATTATCAATTCAAAACGTTAAACAACTACTTGCAC
ATGAGATAGTGTTCTTAGTCTTTTAGATAGACTAAGAAATTTCAGCTCGT
CCTAATCTTATTAAACGGTTCCTGATATTTCATCATCGACCCCAACTTTG
GGTTGGAATTGCTATCTTCTTTTGGCTCTTTTCCAGGATTCTGCAGTCAT
CATTTTTCCTTTTTAAAAATTTTCGCTTCTCAGATATCAAGGAAGCAGTC
ACAAGATTTTGCTTGATTTCTGATTCAGTATCTCAAATTTAGTACAAAAT
TGGGTATCTGTAAATTTAAAATTTTAATTCGAAAACATGGGCCTCGCTAG
TATGCCGTCCGCATCAGAAGGAATGCTATGCTTGATTCTAATGAACACTG
CTATGTCAATCTCAATCGTCAAAGGCATATTCAGATCAATCCTCAAGGTT
GTCGGTTTCCAGCTTGCTGACTCATCATCGCCACCGTATTCATATTTCGC
ATCACCTCAAGTTGTCTCCGCAGAGCCATATGATGTAAATTTAAGTCCTC
CCCTTAGCTATGTTGAGGAGTTCCGAAACCAGAACCCTGCAATCAAGTAT
GAAACATTGCTCCATTGTGAAGATGCAGAGCATGACTGTTCTGTGTGTTT
GACCGAGTTTGAGCCTCAATCTGATATCAATAACTTGTCTTGTGGACATT
TGTTTCATAAAGTGTGCTTGGAGAAGTGGCTGGACTATTTGAATGTTACG
TGCCCGCTTTGCAGGACACCTCTAATTCCTGAGTTTGAAGACGATCCCTC
TTGCTTCTGGTGAGAGTGTTTTATGAGCTTGTCTAGTTGAGGAGACTTCT
ATGTACAGCATGTAGTGTACAGGTATTTACTAATGCATCGGCCGGAGTGT
AGTGTTGTTTACACGCCTTCTATGTGTNNNNNNNATCTCGAGTCCTT
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